University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P15822
Original Database ID gi 141697
Organism Homo sapiens
Annotation recname: full=zinc finger protein
40;altname: full=human immunodeficiency
virus type i enhancer-binding
protein 1;short=hiv-ep1;altname:
full=major h ...
Sequence Length 2717

Dataset Information:

The newest dataset for this sequence was created on 2006-06-16. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region399-456
Protein Length2717
Template PDB Code1x5wA
Template Region8-60
Sequence Identity40%
E-Value4e-11
GA3410.93
Datasetsnp-human4
ModPipe VersionModPipe1.0
Model Date2006-06-16

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB1x5wsolution structure of the c2h2 type zinc-binding domain of human zinc finger protein 64, isoforms 1 and 2
DBALI1x5wA 
CATH3.30.160.60 Domain: 1x5wA01 Classic Zinc Finger (96%)
CATH3.30.160.60 Domain: 1x5wA02 Classic Zinc Finger (90%)
JenaImageLibrary1x5w 
Target Sequence
UniProtKBP15822RecName: Full=Zinc finger protein 40;AltName: Full=Human immunodeficiency virus type I enhancer-binding protein 1;Short=HIV-EP1;AltName: Full=Major histocompatibility complex-binding protein 1;Short=M
InterProP15822 
PFAMP15822 
ProdomP15822 
UniProtKBQ14122RecName: Full=Zinc finger protein 40;AltName: Full=Human immunodeficiency virus type I enhancer-binding protein 1;Short=HIV-EP1;AltName: Full=Major histocompatibility complex-binding protein 1;Short=M
InterProQ14122 
PFAMQ14122 
ProdomQ14122 
GenPept105869A34203 DNA-binding protein PRDII-BF1 - human
GenPept141697ZEP1_HUMAN ZINC FINGER PROTEIN 40 (HUMAN IMMUNODEFICIENCY VIRUS TYPE I ENHANCER-BINDING PROTEIN 1) (HIV-EP1) (MAJOR HIST
GenPept38018unnamed protein product
GenPept4504389 human immunodeficiency virus type I enhancer-binding protein 1 [Homo sapiens]
GenPept507868488Sequence 21 from patent US 8426140
EMBLCAA35798.1 
UCSCGenomeBrowserP15822 
IPIIPI00013444.3