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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link Q2M8U7
Original Database ID tr C6VAK1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation predicted amino-acid transporter
subunit
Sequence Length 305

Dataset Information:

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Model Information

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Target Region1-261
Protein Length305
Template PDB Code2ia4A
Template Region19-279
Sequence Identity25%
E-Value0
GA3411
MPQS1.17284
z-DOPE-0.04
Datasetecolb
ModPipe VersionSVN.r1278
Model Date2010-02-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2ia4crystal structure of novel amino acid binding protein from shigella flexneri
DBALI2ia4A 
JenaImageLibrary2ia4 
Target Sequence
UniProtKBE6NYL1SubName: Full=Extracellular solute-binding protein;
InterProE6NYL1 
PFAME6NYL1 
ProdomE6NYL1 
UniProtKBH0Q7Z0SubName: Full=Predicted amino-acid transporter subunit;
InterProH0Q7Z0 
PFAMH0Q7Z0 
ProdomH0Q7Z0 
UniProtKBC6VAK1SubName: Full=Predicted amino-acid transporter subunit;SubName: Full=YhdW, subunit of YhdW/YhdX/YhdY/YhdZ ABC transporter;
InterProC6VAK1 
PFAMC6VAK1 
ProdomC6VAK1 
UniProtKBG2FA83SubName: Full=Extracellular solute-binding protein family 3;
InterProG2FA83 
PFAMG2FA83 
ProdomG2FA83 
UniProtKBE3PKV9SubName: Full=Putative ABC transporter, substrate-binding protein {ECO:0000313|EMBL:CBJ03028.1};
InterProE3PKV9 
PFAME3PKV9 
ProdomE3PKV9 
UniProtKBG2BEH3SubName: Full=General L-amino acid-binding periplasmic protein aapJ;
InterProG2BEH3 
PFAMG2BEH3 
ProdomG2BEH3 
UniProtKBF9R388SubName: Full=Extracellular solute-binding protein family 3;
InterProF9R388 
PFAMF9R388 
ProdomF9R388 
UniProtKBB1XHN7SubName: Full=Predicted amino-acid transporter subunit; periplasmic-binding component of ABC superfamily;
InterProB1XHN7 
PFAMB1XHN7 
ProdomB1XHN7 
UniProtKBH4VLV5SubName: Full=Putative amino-acid ABC transporter-binding protein yhdW;
InterProH4VLV5 
PFAMH4VLV5 
ProdomH4VLV5 
UniProtKBC6UF91SubName: Full=Predicted amino-acid transporter subunit;
InterProC6UF91 
PFAMC6UF91 
ProdomC6UF91 
UniProtKBC5W9K6SubName: Full=Predicted amino-acid transporter subunit;SubName: Full=YhdW, subunit of YhdW/YhdX/YhdY/YhdZ ABC transporter;
InterProC5W9K6 
PFAMC5W9K6 
ProdomC5W9K6 
UniProtKBM2NBC6SubName: Full=Amino acid ABC transporter substrate-binding protein;
InterProM2NBC6 
PFAMM2NBC6 
ProdomM2NBC6 
UniProtKBB7NLJ5SubName: Full=Amino-acid transporter subunit periplasmic-binding component of ABC superfamily;
InterProB7NLJ5 
PFAMB7NLJ5 
ProdomB7NLJ5 
UniProtKBA0A0H4ILL6SubName: Full=Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:AKO58730.1};
InterProA0A0H4ILL6 
PFAMA0A0H4ILL6 
ProdomA0A0H4ILL6 
UniProtKBA0A0H3MV41SubName: Full=Amino-acid transporter subunit periplasmic-binding component of ABC superfamily {ECO:0000313|EMBL:CAR19884.1};
InterProA0A0H3MV41 
PFAMA0A0H3MV41 
ProdomA0A0H3MV41 
UniProtKBN4FAS0SubName: Full=Bacterial extracellular solute-binding s, 3 family protein;
InterProN4FAS0 
PFAMN4FAS0 
ProdomN4FAS0 
UniProtKBN4ECP9SubName: Full=Bacterial extracellular solute-binding s, 3 family protein;
InterProN4ECP9 
PFAMN4ECP9 
ProdomN4ECP9 
UniProtKBM8SAP3SubName: Full=Bacterial extracellular solute-binding s, 3 family protein {ECO:0000313|EMBL:EMV54088.1};
InterProM8SAP3 
PFAMM8SAP3 
ProdomM8SAP3 
UniProtKBC5W9K6SubName: Full=Predicted amino-acid transporter subunit;SubName: Full=YhdW, subunit of YhdW/YhdX/YhdY/YhdZ ABC transporter;
InterProC5W9K6 
PFAMC5W9K6 
ProdomC5W9K6 
UniProtKBE3PKV9SubName: Full=Putative ABC transporter, substrate-binding protein;
InterProE3PKV9 
PFAME3PKV9 
ProdomE3PKV9 
UniProtKBC6UF91SubName: Full=Predicted amino-acid transporter subunit;
InterProC6UF91 
PFAMC6UF91 
ProdomC6UF91 
UniProtKBC6VAK1SubName: Full=Predicted amino-acid transporter subunit;SubName: Full=YhdW, subunit of YhdW/YhdX/YhdY/YhdZ ABC transporter;
InterProC6VAK1 
PFAMC6VAK1 
ProdomC6VAK1 
UniProtKBF9R388SubName: Full=Extracellular solute-binding protein family 3;
InterProF9R388 
PFAMF9R388 
ProdomF9R388 
UniProtKBG2BEH3SubName: Full=General L-amino acid-binding periplasmic protein aapJ;
InterProG2BEH3 
PFAMG2BEH3 
ProdomG2BEH3 
UniProtKBA0A9Q5XLM1SubName: Full=Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:OZO77788.1}
InterProA0A9Q5XLM1 
PFAMA0A9Q5XLM1 
ProdomA0A9Q5XLM1 
UniProtKBA0A2S5ZI71SubName: Full=Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:OZP07661.1}
InterProA0A2S5ZI71 
PFAMA0A2S5ZI71 
ProdomA0A2S5ZI71 
UniProtKBQ2M8U7Predicted amino-acid transporter subunit
InterProQ2M8U7 
PFAMQ2M8U7 
ProdomQ2M8U7 
UniProtKBE6NYL1SubName: Full=Extracellular solute-binding protein;
InterProE6NYL1 
PFAME6NYL1 
ProdomE6NYL1 
UniProtKBB1XHN7SubName: Full=Predicted amino-acid transporter subunit; periplasmic-binding component of ABC superfamily;
InterProB1XHN7 
PFAMB1XHN7 
ProdomB1XHN7 
UniProtKBH4VLV5SubName: Full=Putative amino-acid ABC transporter-binding protein yhdW;
InterProH4VLV5 
PFAMH4VLV5 
ProdomH4VLV5 
UniProtKBH0Q7Z0SubName: Full=Predicted amino-acid transporter subunit;
InterProH0Q7Z0 
PFAMH0Q7Z0 
ProdomH0Q7Z0 
UniProtKBG2FA83SubName: Full=Extracellular solute-binding protein family 3;
InterProG2FA83 
PFAMG2FA83 
ProdomG2FA83 
UniProtKBB7NLJ5SubName: Full=Amino-acid transporter subunit ; periplasmic-binding component of ABC superfamily;
InterProB7NLJ5 
PFAMB7NLJ5 
ProdomB7NLJ5 
RefSeqYP_003055701.1 predicted amino-acid transporter subunit [Escherichia coli BL21(DE3)]
RefSeqYP_001732116.1 amino-acid ABC transporter periplasmic-binding protein [Escherichia coli str. K-12 substr. DH10B]
RefSeqYP_002409669.1 amino-acid transporter subunit ; periplasmic-binding component of ABC superfamily [Escherichia coli IAI39]
RefSeqYP_003000833.1 hypothetical protein B21_03077 [Escherichia coli BL21]
RefSeqYP_003046311.1 putative amino-acid transporter subunit [Escherichia coli B str. REL606]
RefSeqAP_003808.1 predicted amino-acid transporter subunit [Escherichia coli str. K-12 substr. W3110]
GenPept254163203 putative amino-acid transporter subunit [Escherichia coli B str. REL606]
GenPept89110028 predicted amino-acid transporter subunit [Escherichia coli str. K-12 substr. W3110]
GenPept16131156 (NC_000913) putative periplasmic binding transport protein [Escherichia coli K12]
GenPept732682917amino acid ABC transporter substrate-binding protein
GenPept687678369YhdW, subunit of YhdW/YhdX/YhdY/YhdZ ABC transporter
GenPept687674076YhdW, subunit of YhdW/YhdX/YhdY/YhdZ ABC transporter
GenPept606209ORF_o305; frameshift upstream would extend start
GenPept359333458predicted amino-acid transporter subunit
GenPept315137851extracellular solute-binding protein
GenPept309703687Putative ABC transporter, substrate-binding protein
GenPept254289953 predicted amino-acid transporter subunit [Escherichia coli BL21(DE3)]
GenPept253979260predicted amino-acid transporter subunit
GenPept253975104predicted amino-acid transporter subunit
GenPept251786529 hypothetical protein B21_03077 [Escherichia coli BL21]
GenPept242378802yhdW, subunit of YhdW/YhdX/YhdY/YhdZ ABC transporter
GenPept218702040 amino-acid transporter subunit ; periplasmic-binding component of ABC superfamily [Escherichia coli IAI39]
GenPept218372026amino-acid transporter subunit; periplasmic-binding component of ABC superfamily
GenPept1789668predicted amino-acid transporter subunit
GenPept170082796 amino-acid ABC transporter periplasmic-binding protein [Escherichia coli str. K-12 substr. DH10B]
GenPept169890631predicted amino-acid transporter subunit; periplasmic-binding component of ABC superfamily
GenPept7466056F65119 hypothetical amino-acid ABC transporter in acrF- rrnD intergenic region - Escherichia coli (strain K-12)
GenPept756815265Sequence 47 from patent US 8828355
GenPept808701906amino acid ABC transporter substrate-binding protein
GenPept899728511amino acid ABC transporter substrate-binding protein
GenPept899724155amino acid ABC transporter substrate-binding protein
GenPept85676059predicted amino-acid transporter subunit
GenPept808736538amino acid ABC transporter substrate-binding protein
GenPept932861356Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4)
GenPept808732100amino acid ABC transporter substrate-binding protein
GenPept808723783amino acid ABC transporter substrate-binding protein
GenPept808719413amino acid ABC transporter substrate-binding protein
GenPept808715003amino acid ABC transporter substrate-binding protein
GenPept808710635amino acid ABC transporter substrate-binding protein
GenPept808706281amino acid ABC transporter substrate-binding protein
GenPept899732988amino acid ABC transporter substrate-binding protein
GenBankAAA58072.1 ORF_o305; frameshift upstream would extend start [Escherichia coli str. K-12 substr. MG1655]
GenBankACT44930.1 predicted amino-acid transporter subunit [Escherichia coli BL21(DE3)]
GenBankACB04338.1 predicted amino-acid transporter subunit; periplasmic-binding component of ABC superfamily [Escherichia coli str. K-12 substr. DH10B]
GenBankACT40775.1 predicted amino-acid transporter subunit [Escherichia coli B str. REL606]
EMBLCAQ33594.1 
EMBLCAR19884.1