University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P45766
Original Database ID UP P45766
Organism Escherichia coli K-12
Annotation recname: full=putative amino-acid
abc transporter-binding protein
yhdw;flags: pr ecursor;
Sequence Length 341

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region21-297
Protein Length341
Template PDB Code2vhaA
Template Region3-279
Sequence Identity25%
E-Value0
GA3411
MPQS1.07952
z-DOPE-0.16
TSVMod MethodMSALL
TSVMod RMSD3.974
TSVMod NO350.74
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2vhadebp
DBALI2vhaA 
JenaImageLibrary2vha 
Target Sequence
UniProtKBP45766RecName: Full=Putative amino-acid ABC transporter-binding protein YhdW;Flags: Precursor;
InterProP45766 
PFAMP45766 
ProdomP45766 
UniProtKBQ2M8U7RecName: Full=Putative amino-acid ABC transporter-binding protein YhdW;Flags: Precursor;
InterProQ2M8U7 
PFAMQ2M8U7 
ProdomQ2M8U7 
UniProtKBP45766RecName: Full=Putative amino-acid ABC transporter-binding protein YhdW;Flags: Precursor;
InterProP45766 
PFAMP45766 
ProdomP45766 
UniProtKBP45766.2YHDW_ECOLI RecName: Full=Putative amino-acid ABC transporter-binding protein yhdW; Flags: Precursor
InterProP45766.2 
PFAMP45766.2 
ProdomP45766.2 
UniProtKBQ2M8U7RecName: Full=Putative amino-acid ABC transporter-binding protein YhdW;Flags: Precursor;
InterProQ2M8U7 
PFAMQ2M8U7 
ProdomQ2M8U7 
GenPept13959721YHDW_ECOLI RecName: Full=Putative amino-acid ABC transporter-binding protein yhdW; Flags: Precursor