University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A080HYW3
Original Database ID tr C6UEF9
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation subname: full=inner membrane transport
protein yhao {eco:0000313|embl:keo22106.1
};
Sequence Length 422

Dataset Information:

The newest dataset for this sequence was created on 2007-08-06. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region17-390
Protein Length422
Template PDB Code2a65A
Template Region12-424
Sequence Identity15%
E-Value 2.4e-09
GA3410.06
MPQS0.89
z-DOPE-0.26
Datasetecoli_membrane
ModPipe VersionModPipe2.0
Model Date2007-08-06

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2a65crystal structure of leutaa, a bacterial homolog of na+/cl--dependent neurotransmitter transporters
DBALI2a65A 
JenaImageLibrary2a65 
Target Sequence
UniProtKBS0U3U0SubName: Full=Inner membrane transporter YhaO;
InterProS0U3U0 
PFAMS0U3U0 
ProdomS0U3U0 
UniProtKBA0A080HYW3SubName: Full=Inner membrane transport protein YhaO {ECO:0000313|EMBL:KEO22106.1};
InterProA0A080HYW3 
PFAMA0A080HYW3 
ProdomA0A080HYW3 
UniProtKBB1XGS6SubName: Full=Predicted transporter;
InterProB1XGS6 
PFAMB1XGS6 
ProdomB1XGS6 
UniProtKBB7M018SubName: Full=Putative transporter;
InterProB7M018 
PFAMB7M018 
ProdomB7M018 
UniProtKBB7NJX8SubName: Full=Putative transporter;
InterProB7NJX8 
PFAMB7NJX8 
ProdomB7NJX8 
UniProtKBC5W962SubName: Full=Predicted transporter;SubName: Full=YhaO STP transporter;
InterProC5W962 
PFAMC5W962 
ProdomC5W962 
UniProtKBC6UEF9SubName: Full=Predicted transporter;
InterProC6UEF9 
PFAMC6UEF9 
ProdomC6UEF9 
UniProtKBC6V9R7SubName: Full=Predicted transporter;SubName: Full=YhaO STP transporter;
InterProC6V9R7 
PFAMC6V9R7 
ProdomC6V9R7 
UniProtKBE3PK23SubName: Full=Putative membrane protein {ECO:0000313|EMBL:CBJ02879.1};
InterProE3PK23 
PFAME3PK23 
ProdomE3PK23 
UniProtKBA0A0H3MUQ5SubName: Full=Putative transporter {ECO:0000313|EMBL:CAR19728.1};
InterProA0A0H3MUQ5 
PFAMA0A0H3MUQ5 
ProdomA0A0H3MUQ5 
UniProtKBH0QED6SubName: Full=Predicted transporter;
InterProH0QED6 
PFAMH0QED6 
ProdomH0QED6 
UniProtKBJ7RX39SubName: Full=Putative transport system permease protein {ECO:0000313|EMBL:CCK48424.1};
InterProJ7RX39 
PFAMJ7RX39 
ProdomJ7RX39 
UniProtKBG2CQK0SubName: Full=Inner membrane transport protein yhaO;
InterProG2CQK0 
PFAMG2CQK0 
ProdomG2CQK0 
UniProtKBN3L5T4SubName: Full=Inner membrane transport protein YhaO;
InterProN3L5T4 
PFAMN3L5T4 
ProdomN3L5T4 
UniProtKBB7LH48SubName: Full=YhaO protein {ECO:0000313|EMBL:CAU99700.1};
InterProB7LH48 
PFAMB7LH48 
ProdomB7LH48 
UniProtKBJ7R628SubName: Full=Inner membrane transport protein YhaO {ECO:0000313|EMBL:KGM71965.1};SubName: Full=Putative transport system permease protein {ECO:0000313|EMBL:CCJ45738.1};
InterProJ7R628 
PFAMJ7R628 
ProdomJ7R628 
UniProtKBB1XGS6SubName: Full=Predicted transporter;
InterProB1XGS6 
PFAMB1XGS6 
ProdomB1XGS6 
UniProtKBB7LH48SubName: Full=Putative transporter;
InterProB7LH48 
PFAMB7LH48 
ProdomB7LH48 
UniProtKBQ2M997Predicted transporter
InterProQ2M997 
PFAMQ2M997 
ProdomQ2M997 
UniProtKBB7M018SubName: Full=Putative transporter;
InterProB7M018 
PFAMB7M018 
ProdomB7M018 
UniProtKBB7NJX8SubName: Full=Putative transporter;
InterProB7NJX8 
PFAMB7NJX8 
ProdomB7NJX8 
UniProtKBC5W962SubName: Full=Predicted transporter;SubName: Full=YhaO STP transporter;
InterProC5W962 
PFAMC5W962 
ProdomC5W962 
UniProtKBH0QED6SubName: Full=Predicted transporter;
InterProH0QED6 
PFAMH0QED6 
ProdomH0QED6 
UniProtKBC6UEF9SubName: Full=Predicted transporter;
InterProC6UEF9 
PFAMC6UEF9 
ProdomC6UEF9 
UniProtKBC6V9R7SubName: Full=Predicted transporter;SubName: Full=YhaO STP transporter;
InterProC6V9R7 
PFAMC6V9R7 
ProdomC6V9R7 
UniProtKBG2CQK0SubName: Full=Inner membrane transport protein yhaO;
InterProG2CQK0 
PFAMG2CQK0 
ProdomG2CQK0 
UniProtKBE3PK23SubName: Full=Putative membrane protein;
InterProE3PK23 
PFAME3PK23 
ProdomE3PK23 
UniProtKBP42628Hypothetical transport protein yhaO
InterProP42628 
PFAMP42628 
ProdomP42628 
RefSeqYP_001731971.1 transporter [Escherichia coli str. K-12 substr. DH10B]
RefSeqYP_003055553.1 predicted transporter [Escherichia coli BL21(DE3)]
RefSeqYP_002404484.1 putative transporter [Escherichia coli 55989]
RefSeqYP_002388595.1 putative transporter [Escherichia coli IAI1]
RefSeqYP_002409515.1 putative transporter [Escherichia coli IAI39]
RefSeqAP_003658.1 predicted transporter [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_003000689.1 hypothetical protein B21_02929 [Escherichia coli BL21]
RefSeqYP_003046163.1 putative transporter [Escherichia coli B str. REL606]
GenPept170082651 transporter [Escherichia coli str. K-12 substr. DH10B]
GenPept218371872putative transporter
GenPept218696817 putative transporter [Escherichia coli 55989]
GenPept242378658YhaO STP transporter
GenPept218362450putative transporter
GenPept218353549putative transporter
GenPept17380551YHAO_ECOLI Hypothetical transport protein yhaO
GenPept218701886 putative transporter [Escherichia coli IAI39]
GenPept169890486predicted transporter
GenPept87082212predicted transporter
GenPept251786385 hypothetical protein B21_02929 [Escherichia coli BL21]
GenPept218555682 putative transporter [Escherichia coli IAI1]
GenPept412964495putative transport system permease protein
GenPept89109878 predicted transporter [Escherichia coli str. K-12 substr. W3110]
GenPept85675909predicted transporter
GenPept687678214YhaO STP transporter
GenPept687673924YhaO STP transporter
GenPept412971084putative transport system permease protein
GenPept359333313predicted transporter
GenPept317441897unnamed protein product
GenPept309703539putative membrane protein
GenPept254289805 predicted transporter [Escherichia coli BL21(DE3)]
GenPept253974956predicted transporter
GenPept253979112predicted transporter
GenPept254163055 putative transporter [Escherichia coli B str. REL606]
GenBankACB04193.1 predicted transporter [Escherichia coli str. K-12 substr. DH10B]
GenBankACT44782.1 predicted transporter [Escherichia coli BL21(DE3)]
GenBankACT40627.1 predicted transporter [Escherichia coli B str. REL606]
EMBLCAR19728.1 
EMBLCAQ33446.1 
EMBLCAR00074.1 
EMBLCAU99700.1