University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P42601
Original Database ID ref YP_026201.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation recname: full=inner membrane protein
alx;
Sequence Length 321

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region8-240
Protein Length321
Template PDB Code3ddlA
Template Region15-253
Sequence Identity12%
E-Value0.27
GA3410.05
MPQS0.668857
z-DOPE0.61
TSVMod MethodMTALL
TSVMod RMSD6.838
TSVMod NO350.768
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3ddlcrystallographic structure of xanthorhodopsin, a light-driven ion pump with dual chromophore
DBALI3ddlA 
CATH1.20.1070.10 Domain: 3ddlA00 Rhopdopsin 7-helix transmembrane proteins (92%)
JenaImageLibrary3ddl 
Target Sequence
UniProtKBG5UWL4SubName: Full=Inner membrane protein alx;
InterProG5UWL4 
PFAMG5UWL4 
ProdomG5UWL4 
UniProtKBA0A070FM23SubName: Full=Membrane protein {ECO:0000313|EMBL:KDV63539.1};
InterProA0A070FM23 
PFAMA0A070FM23 
ProdomA0A070FM23 
UniProtKBA0A070SVI3SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDX22057.1};
InterProA0A070SVI3 
PFAMA0A070SVI3 
ProdomA0A070SVI3 
UniProtKBA0A071AMI0SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDY61004.1};
InterProA0A071AMI0 
PFAMA0A071AMI0 
ProdomA0A071AMI0 
UniProtKBA0A071BTM7SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDY85965.1};
InterProA0A071BTM7 
PFAMA0A071BTM7 
ProdomA0A071BTM7 
UniProtKBA0A071DEG4SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDZ38716.1};
InterProA0A071DEG4 
PFAMA0A071DEG4 
ProdomA0A071DEG4 
UniProtKBA0A073GMW5SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KEJ66340.1};
InterProA0A073GMW5 
PFAMA0A073GMW5 
ProdomA0A073GMW5 
UniProtKBA0A079DPJ2SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDY24076.1};
InterProA0A079DPJ2 
PFAMA0A079DPJ2 
ProdomA0A079DPJ2 
UniProtKBA0A079F4D0SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDY52629.1};
InterProA0A079F4D0 
PFAMA0A079F4D0 
ProdomA0A079F4D0 
UniProtKBA0A079HA22SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDY97988.1};
InterProA0A079HA22 
PFAMA0A079HA22 
ProdomA0A079HA22 
UniProtKBA0A080GNX9SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KEN88182.1};
InterProA0A080GNX9 
PFAMA0A080GNX9 
ProdomA0A080GNX9 
UniProtKBA0A069Z4V0SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDU53967.1};
InterProA0A069Z4V0 
PFAMA0A069Z4V0 
ProdomA0A069Z4V0 
UniProtKBA0A069XY94SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDU32598.1};
InterProA0A069XY94 
PFAMA0A069XY94 
ProdomA0A069XY94 
UniProtKBE9WIF0SubName: Full=Integral membrane protein TerC family protein;
InterProE9WIF0 
PFAME9WIF0 
ProdomE9WIF0 
UniProtKBG2F5W1SubName: Full=Putative inner membrane protein;
InterProG2F5W1 
PFAMG2F5W1 
ProdomG2F5W1 
UniProtKBG5WYY7SubName: Full=Inner membrane protein alx;
InterProG5WYY7 
PFAMG5WYY7 
ProdomG5WYY7 
UniProtKBB7LH23SubName: Full=Alx protein {ECO:0000313|EMBL:CAU99658.1};
InterProB7LH23 
PFAMB7LH23 
ProdomB7LH23 
UniProtKBB1XG92SubName: Full=Predicted inner membrane protein, part of terminus;
InterProB1XG92 
PFAMB1XG92 
ProdomB1XG92 
UniProtKBG5WIY7SubName: Full=Inner membrane protein alx;
InterProG5WIY7 
PFAMG5WIY7 
ProdomG5WIY7 
UniProtKBG5Y7E8SubName: Full=Inner membrane protein alx;
InterProG5Y7E8 
PFAMG5Y7E8 
ProdomG5Y7E8 
UniProtKBB3HD11SubName: Full=Inner membrane protein, part of terminus {ECO:0000313|EMBL:AIF63658.1};
InterProB3HD11 
PFAMB3HD11 
ProdomB3HD11 
UniProtKBH0QEB5SubName: Full=Predicted inner membrane protein, part of terminus;
InterProH0QEB5 
PFAMH0QEB5 
ProdomH0QEB5 
UniProtKBB3IFC3SubName: Full=Protein Alx;
InterProB3IFC3 
PFAMB3IFC3 
ProdomB3IFC3 
UniProtKBB3WLI4SubName: Full=Protein Alx;
InterProB3WLI4 
PFAMB3WLI4 
ProdomB3WLI4 
UniProtKBA0A0E1M625SubName: Full=Putative membrane-bound redox modulator {ECO:0000313|EMBL:AJF57909.1};
InterProA0A0E1M625 
PFAMA0A0E1M625 
ProdomA0A0E1M625 
UniProtKBA0A0E1SVE1SubName: Full=Protein Alx {ECO:0000313|EMBL:EDU63059.1};
InterProA0A0E1SVE1 
PFAMA0A0E1SVE1 
ProdomA0A0E1SVE1 
UniProtKBE8Y413SubName: Full=Integral membrane protein TerC {ECO:0000313|EMBL:ADX49286.1};
InterProE8Y413 
PFAME8Y413 
ProdomE8Y413 
UniProtKBE7HGI6SubName: Full=Integral membrane TerC family protein;
InterProE7HGI6 
PFAME7HGI6 
ProdomE7HGI6 
UniProtKBD8BY74SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EFI88383.1};
InterProD8BY74 
PFAMD8BY74 
ProdomD8BY74 
UniProtKBB7LZN6SubName: Full=Uncharacterized protein;
InterProB7LZN6 
PFAMB7LZN6 
ProdomB7LZN6 
UniProtKBF9HYB3SubName: Full=Inner membrane protein alx;SubName: Full=YgjT;
InterProF9HYB3 
PFAMF9HYB3 
ProdomF9HYB3 
UniProtKBF8YKM7SubName: Full=Putative inner membrane protein;
InterProF8YKM7 
PFAMF8YKM7 
ProdomF8YKM7 
UniProtKBG2BU96SubName: Full=Integral membrane protein TerC family protein;
InterProG2BU96 
PFAMG2BU96 
ProdomG2BU96 
UniProtKBG2BDY1SubName: Full=Integral membrane protein TerC family protein;
InterProG2BDY1 
PFAMG2BDY1 
ProdomG2BDY1 
UniProtKBG2D403SubName: Full=Integral membrane protein TerC family protein;
InterProG2D403 
PFAMG2D403 
ProdomG2D403 
UniProtKBG5U2P2SubName: Full=Inner membrane protein alx;
InterProG5U2P2 
PFAMG5U2P2 
ProdomG5U2P2 
UniProtKBE7I938SubName: Full=Integral membrane protein TerC family protein;
InterProE7I938 
PFAME7I938 
ProdomE7I938 
UniProtKBE7IQW8SubName: Full=Integral membrane protein TerC family protein;
InterProE7IQW8 
PFAME7IQW8 
ProdomE7IQW8 
UniProtKBE0IWP8SubName: Full=Predicted inner membrane protein, part of terminus {ECO:0000313|EMBL:ADT76721.1};SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:AFH12926.1};
InterProE0IWP8 
PFAME0IWP8 
ProdomE0IWP8 
UniProtKBA0A0E2TT76SubName: Full=Membrane protein {ECO:0000313|EMBL:EYV13869.1};
InterProA0A0E2TT76 
PFAMA0A0E2TT76 
ProdomA0A0E2TT76 
UniProtKBA0A0E2U9Z2SubName: Full=Membrane protein {ECO:0000313|EMBL:EZE25294.1};
InterProA0A0E2U9Z2 
PFAMA0A0E2U9Z2 
ProdomA0A0E2U9Z2 
UniProtKBC8THA3SubName: Full=Predicted inner membrane protein {ECO:0000313|EMBL:BAI27365.1};
InterProC8THA3 
PFAMC8THA3 
ProdomC8THA3 
UniProtKBC9QYS5SubName: Full=Integral membrane protein TerC;SubName: Full=Putative inner membrane protein, part of terminus;
InterProC9QYS5 
PFAMC9QYS5 
ProdomC9QYS5 
UniProtKBC8UG46SubName: Full=Predicted inner membrane protein {ECO:0000313|EMBL:BAI37690.1};
InterProC8UG46 
PFAMC8UG46 
ProdomC8UG46 
UniProtKBD8ATA5SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EFK13610.1};
InterProD8ATA5 
PFAMD8ATA5 
ProdomD8ATA5 
UniProtKBC8TX82SubName: Full=Predicted inner membrane protein {ECO:0000313|EMBL:BAI32544.1};
InterProC8TX82 
PFAMC8TX82 
ProdomC8TX82 
UniProtKBC4ZR04SubName: Full=Predicted inner membrane protein, part of terminus;
InterProC4ZR04 
PFAMC4ZR04 
ProdomC4ZR04 
UniProtKBE1J0P3SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EFK70606.1};
InterProE1J0P3 
PFAME1J0P3 
ProdomE1J0P3 
UniProtKBE1HK52SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EFK91750.1};
InterProE1HK52 
PFAME1HK52 
ProdomE1HK52 
UniProtKBG5UD43SubName: Full=Inner membrane protein alx;
InterProG5UD43 
PFAMG5UD43 
ProdomG5UD43 
UniProtKBG5TNB0SubName: Full=Inner membrane protein alx;
InterProG5TNB0 
PFAMG5TNB0 
ProdomG5TNB0 
UniProtKBA0A025GIJ0SubName: Full=Membrane protein {ECO:0000313|EMBL:EYV64073.1};
InterProA0A025GIJ0 
PFAMA0A025GIJ0 
ProdomA0A025GIJ0 
UniProtKBB1IRM9SubName: Full=Integral membrane protein TerC;
InterProB1IRM9 
PFAMB1IRM9 
ProdomB1IRM9 
UniProtKBA0A028ECU0SubName: Full=Membrane protein {ECO:0000313|EMBL:EZE58027.1};
InterProA0A028ECU0 
PFAMA0A028ECU0 
ProdomA0A028ECU0 
UniProtKBA0A070T3M7SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDX24526.1};
InterProA0A070T3M7 
PFAMA0A070T3M7 
ProdomA0A070T3M7 
UniProtKBA0A074HMT6SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KEN95504.1};
InterProA0A074HMT6 
PFAMA0A074HMT6 
ProdomA0A074HMT6 
UniProtKBA0A0A8UIR9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CEK06977.1};
InterProA0A0A8UIR9 
PFAMA0A0A8UIR9 
ProdomA0A0A8UIR9 
UniProtKBA0A0H3XA18SubName: Full=Inner membrane protein, part of terminus {ECO:0000313|EMBL:AKM36640.1};
InterProA0A0H3XA18 
PFAMA0A0H3XA18 
ProdomA0A0H3XA18 
UniProtKBD8B8E6SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EFJ64660.1};
InterProD8B8E6 
PFAMD8B8E6 
ProdomD8B8E6 
UniProtKBE6BFD2SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EFU36972.1};
InterProE6BFD2 
PFAME6BFD2 
ProdomE6BFD2 
UniProtKBE9VYX4SubName: Full=Integral membrane protein TerC family protein;
InterProE9VYX4 
PFAME9VYX4 
ProdomE9VYX4 
UniProtKBG1ZP07SubName: Full=Integral membrane protein TerC family protein;
InterProG1ZP07 
PFAMG1ZP07 
ProdomG1ZP07 
UniProtKBG5VEG2SubName: Full=Inner membrane protein alx;
InterProG5VEG2 
PFAMG5VEG2 
ProdomG5VEG2 
UniProtKBG1Z9W4SubName: Full=Integral membrane protein TerC family protein;
InterProG1Z9W4 
PFAMG1Z9W4 
ProdomG1Z9W4 
UniProtKBA0A026H1Z0SubName: Full=Membrane protein {ECO:0000313|EMBL:EYY76952.1};
InterProA0A026H1Z0 
PFAMA0A026H1Z0 
ProdomA0A026H1Z0 
UniProtKBG0F6Z1SubName: Full=Integral membrane protein TerC family protein {ECO:0000313|EMBL:AEJ58487.1};
InterProG0F6Z1 
PFAMG0F6Z1 
ProdomG0F6Z1 
UniProtKBA0A027U056SubName: Full=Membrane protein {ECO:0000313|EMBL:EZD30991.1};
InterProA0A027U056 
PFAMA0A027U056 
ProdomA0A027U056 
UniProtKBA0A0E3KII3SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:AKA92274.1};
InterProA0A0E3KII3 
PFAMA0A0E3KII3 
ProdomA0A0E3KII3 
UniProtKBF9CN09SubName: Full=Putative inner membrane protein;
InterProF9CN09 
PFAMF9CN09 
ProdomF9CN09 
UniProtKBG5XHC0SubName: Full=Inner membrane protein alx;
InterProG5XHC0 
PFAMG5XHC0 
ProdomG5XHC0 
UniProtKBA0A028C7A5SubName: Full=Membrane protein {ECO:0000313|EMBL:EZE31438.1};
InterProA0A028C7A5 
PFAMA0A028C7A5 
ProdomA0A028C7A5 
UniProtKBA0A073TID3SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KEL28078.1};
InterProA0A073TID3 
PFAMA0A073TID3 
ProdomA0A073TID3 
UniProtKBA0A0G3HNY2SubName: Full=Inner membrane protein, part of terminus protein {ECO:0000313|EMBL:AKK15074.1};
InterProA0A0G3HNY2 
PFAMA0A0G3HNY2 
ProdomA0A0G3HNY2 
UniProtKBE6B4X7SubName: Full=Integral membrane TerC family protein {ECO:0000313|EMBL:EFU97773.1};
InterProE6B4X7 
PFAME6B4X7 
ProdomE6B4X7 
UniProtKBG2AZI1SubName: Full=Integral membrane protein TerC family protein;
InterProG2AZI1 
PFAMG2AZI1 
ProdomG2AZI1 
UniProtKBG5VU62SubName: Full=Inner membrane protein alx;
InterProG5VU62 
PFAMG5VU62 
ProdomG5VU62 
UniProtKBF4NI45SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EGJ05792.1};
InterProF4NI45 
PFAMF4NI45 
ProdomF4NI45 
UniProtKBA0A0H4RYS2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKP86062.1};
InterProA0A0H4RYS2 
PFAMA0A0H4RYS2 
ProdomA0A0H4RYS2 
UniProtKBD6I172SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EFE61944.2};
InterProD6I172 
PFAMD6I172 
ProdomD6I172 
UniProtKBD7XRR6SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EFJ85902.1};
InterProD7XRR6 
PFAMD7XRR6 
ProdomD7XRR6 
UniProtKBE1IL31SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EFO59874.1};
InterProE1IL31 
PFAME1IL31 
ProdomE1IL31 
UniProtKBE3PK02SubName: Full=Putative pH-induced membrane-bound redox modulator {ECO:0000313|EMBL:CBJ02858.1};
InterProE3PK02 
PFAME3PK02 
ProdomE3PK02 
UniProtKBE7J8Y2SubName: Full=Integral membrane protein TerC family protein;
InterProE7J8Y2 
PFAME7J8Y2 
ProdomE7J8Y2 
UniProtKBE7UEU9SubName: Full=Integral membrane protein TerC;
InterProE7UEU9 
PFAME7UEU9 
ProdomE7UEU9 
UniProtKBC1NE68SubName: Full=Inner membrane protein alx;
InterProC1NE68 
PFAMC1NE68 
ProdomC1NE68 
UniProtKBG1YDR6SubName: Full=Integral membrane protein TerC family protein;
InterProG1YDR6 
PFAMG1YDR6 
ProdomG1YDR6 
UniProtKBG2CQH8SubName: Full=Integral membrane protein TerC family protein;
InterProG2CQH8 
PFAMG2CQH8 
ProdomG2CQH8 
UniProtKBA0A0E1ZRD2SubName: Full=Integral membrane protein TerC {ECO:0000313|EMBL:EIL31013.1};
InterProA0A0E1ZRD2 
PFAMA0A0E1ZRD2 
ProdomA0A0E1ZRD2 
UniProtKBA0A0E0XVN2SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:AFS72632.1};
InterProA0A0E0XVN2 
PFAMA0A0E0XVN2 
ProdomA0A0E0XVN2 
UniProtKBA0A079FPL5SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDY61837.1};
InterProA0A079FPL5 
PFAMA0A079FPL5 
ProdomA0A079FPL5 
UniProtKBG5Y1R3SubName: Full=Inner membrane protein alx;
InterProG5Y1R3 
PFAMG5Y1R3 
ProdomG5Y1R3 
UniProtKBB2NBI9SubName: Full=Protein Alx;
InterProB2NBI9 
PFAMB2NBI9 
ProdomB2NBI9 
UniProtKBB3I0R2SubName: Full=Protein Alx;
InterProB3I0R2 
PFAMB3I0R2 
ProdomB3I0R2 
UniProtKBG5WAS3SubName: Full=Inner membrane protein alx;
InterProG5WAS3 
PFAMG5WAS3 
ProdomG5WAS3 
UniProtKBA0A069XBC5SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDU27277.1};
InterProA0A069XBC5 
PFAMA0A069XBC5 
ProdomA0A069XBC5 
UniProtKBA0A070DL56SubName: Full=Membrane protein {ECO:0000313|EMBL:KDV41275.1};
InterProA0A070DL56 
PFAMA0A070DL56 
ProdomA0A070DL56 
UniProtKBA0A070Y8E5SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDX87255.1};
InterProA0A070Y8E5 
PFAMA0A070Y8E5 
ProdomA0A070Y8E5 
UniProtKBA0A071CIU2SubName: Full=Integral membrane , TerC family protein {ECO:0000313|EMBL:KDZ18822.1};
InterProA0A071CIU2 
PFAMA0A071CIU2 
ProdomA0A071CIU2 
UniProtKBA0A077ZJP4SubName: Full=TerC domain containing protein {ECO:0000313|EMBL:CDW59888.1};
InterProA0A077ZJP4 
PFAMA0A077ZJP4 
ProdomA0A077ZJP4 
UniProtKBF4SN89SubName: Full=Inner membrane protein alx {ECO:0000313|EMBL:EGI09481.1};
InterProF4SN89 
PFAMF4SN89 
ProdomF4SN89