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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link G1SAW0
Original Database ID EN ENSP00000477907.1
Organism Gorilla gorilla gorilla, Pan paniscus, etc.
Annotation recname: full=histone h2b;
Sequence Length 126

Dataset Information:

The newest dataset for this sequence was created on 2016-06-12. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region5-126
Protein Length126
Template PDB Code1kx5D
Template Region1-122
Sequence Identity89%
E-Value0
GA3411
MPQS1.94925
z-DOPE-0.01
TSVMod MethodMTALL
TSVMod RMSD9.746
TSVMod NO350.725
DatasetMW-Human_D11
ModPipe VersionSVN.r1600
Model Date2016-06-12

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1kx5x-ray structure of the nucleosome core particle, ncp147, at 1.9 a resolution ; PFAM: PF00125 ; SCOP: 77596
DBALI1kx5D 
CATH1.10.20.10 Domain: 1kx5D00 Histone, subunit A (100%)
JenaImageLibrary1kx5 
Target Sequence
UniProtKBG1SAW0RecName: Full=Histone H2B {ECO:0000256|RuleBase:RU000451};
InterProG1SAW0 
PFAMG1SAW0 
ProdomG1SAW0 
UniProtKBQ99879RecName: Full=Histone H2B type 1-M;AltName: Full=Histone H2B.e;Short=H2B/e;
InterProQ99879 
PFAMQ99879 
ProdomQ99879 
UniProtKBQ6NWQ3RecName: Full=Histone H2B type 1-M;AltName: Full=Histone H2B.e;Short=H2B/e;
InterProQ6NWQ3 
PFAMQ6NWQ3 
ProdomQ6NWQ3 
UniProtKBH2PI87RecName: Full=Histone H2B {ECO:0000256|RuleBase:RU000451};
InterProH2PI87 
PFAMH2PI87 
ProdomH2PI87 
UniProtKBG3QKC6RecName: Full=Histone H2B {ECO:0000256|RuleBase:RU000451};
InterProG3QKC6 
PFAMG3QKC6 
ProdomG3QKC6 
UniProtKBA0A2R8ZP44Histone H2B {ECO:0000256|RuleBase:RU000451}
InterProA0A2R8ZP44 
PFAMA0A2R8ZP44 
ProdomA0A2R8ZP44 
UniProtKBA0A2J8SK64Histone H2B {ECO:0000256|RuleBase:RU000451}
InterProA0A2J8SK64 
PFAMA0A2J8SK64 
ProdomA0A2J8SK64 
UniProtKBA0A2J8NWM9Histone H2B {ECO:0000256|RuleBase:RU000451}
InterProA0A2J8NWM9 
PFAMA0A2J8NWM9 
ProdomA0A2J8NWM9 
UniProtKBA0A2I3T8D8Histone H2B {ECO:0000256|RuleBase:RU000451}
InterProA0A2I3T8D8 
PFAMA0A2I3T8D8 
ProdomA0A2I3T8D8 
UniProtKBA0A2I3GWH1Histone H2B {ECO:0000256|RuleBase:RU000451}
InterProA0A2I3GWH1 
PFAMA0A2I3GWH1 
ProdomA0A2I3GWH1 
UniProtKBA0A6D2XWM1Histone H2B {ECO:0000256|RuleBase:RU000451}
InterProA0A6D2XWM1 
PFAMA0A6D2XWM1 
ProdomA0A6D2XWM1 
UniProtKBG1SAW0RecName: Full=Histone H2B;
InterProG1SAW0 
PFAMG1SAW0 
ProdomG1SAW0 
UniProtKBA0A2I2Y3S5Histone H2B {ECO:0000256|RuleBase:RU000451}
InterProA0A2I2Y3S5 
PFAMA0A2I2Y3S5 
ProdomA0A2I2Y3S5 
UniProtKBG3QKC6RecName: Full=Histone H2B;
InterProG3QKC6 
PFAMG3QKC6 
ProdomG3QKC6 
UniProtKBA0A5S6RD82Histone H2B {ECO:0000256|RuleBase:RU000451}
InterProA0A5S6RD82 
PFAMA0A5S6RD82 
ProdomA0A5S6RD82 
UniProtKBH2PI87RecName: Full=Histone H2B;
InterProH2PI87 
PFAMH2PI87 
ProdomH2PI87 
UniProtKBQ6NWQ3RecName: Full=Histone H2B type 1-M;AltName: Full=Histone H2B.e;Short=H2B/e;
InterProQ6NWQ3 
PFAMQ6NWQ3 
ProdomQ6NWQ3 
UniProtKBQ99879RecName: Full=Histone H2B type 1-M;AltName: Full=Histone H2B.e;Short=H2B/e;
InterProQ99879 
PFAMQ99879 
ProdomQ99879 
UniProtKBQ99879.3H2B1M_HUMAN RecName: Full=Histone H2B type 1-M; AltName: Full=Histone H2B.e; Short=H2B/e
InterProQ99879.3 
PFAMQ99879.3 
ProdomQ99879.3 
RefSeqXP_031996551.1histone H2B type 1-M
RefSeqNP_003512.1 histone H2B type 1-M [Homo sapiens]
RefSeqXP_002816623.1 PREDICTED: histone H2B type 1-M-like [Pongo abelii]
GenPept119623515histone 1, H2bm
GenPept4504263 histone H2B type 1-M [Homo sapiens]
GenPept42542574Histone cluster 1, H2bm
GenPept311813535unnamed protein product
GenPept311812740unnamed protein product
GenPept22770661histone H2B
GenPept207008870unnamed protein product
GenPept297677451 PREDICTED: histone H2B type 1-M-like [Pongo abelii]
GenPept207008672unnamed protein product
GenPept1749802histone H2B
GenPept12732556 H2B histone family, member E [Homo sapiens]
GenPept7387742H2B1M_HUMAN RecName: Full=Histone H2B type 1-M; AltName: Full=Histone H2B.e; Short=H2B/e
GenPept7264003histone cluster 1, H2bm
GenPept649104463HIST1H2BM, partial
GenPept568561046Sequence 65568 from patent US 8586006
GenPept45768498Histone cluster 1, H2bm
GenPept45768278Histone cluster 1, H2bm
GenPept45767721Histone cluster 1, H2bm
GenBankEAX03110.1 histone 1, H2bm [Homo sapiens]
GenBankAAH66244.1 Histone cluster 1, H2bm [Homo sapiens]
GenBankAAH67486.1 Histone cluster 1, H2bm [Homo sapiens]
GenBankAAH67488.1 Histone cluster 1, H2bm [Homo sapiens]
GenBankAAH67489.1 Histone cluster 1, H2bm [Homo sapiens]
GenBankAAN06696.1 histone H2B [Homo sapiens]
ENSEMBLENSP00000352442Histone H2B.e (H2B/e). [Homo sapiens]
EMBLCAB06033.1 
EMBLCAB81655.1 
ENSEMBLENSP00000352442 
ENSEMBLENSP00000352442TDI sequence
ENSEMBLENSP00000352442