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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link E1P603
Original Database ID ENSP00000343718 ENSP00000343718
Organism Homo sapiens, synthetic construct
Annotation subname: full=rna-binding region
(rnp1, rrm) containing 1, isoform
cra_a;
Sequence Length 216

Dataset Information:

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Model Information

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Target Region1-105
Protein Length216
Template PDB Code2cqdA
Template Region1-105
Sequence Identity98%
E-Value0
GA3411
MPQS1.44811
z-DOPE-0.27
Datasethuman_2010_A1
ModPipe VersionSVN.r1188:1193
Model Date2010-11-02

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Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB2cqdsolution structure of the rna recognition motif in rna-binding region containing protein 1
DBALI2cqdA 
CATH3.30.70.330 Domain: 2cqdA01 Alpha-Beta Plaits (100%)
JenaImageLibrary2cqd 
Target Sequence
UniProtKBH0UI71SubName: Full=RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a {ECO:0000313|EMBL:EAW75520.1};
InterProH0UI71 
PFAMH0UI71 
ProdomH0UI71 
UniProtKBE1P603SubName: Full=RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a;
InterProE1P603 
PFAME1P603 
ProdomE1P603 
UniProtKBE1P603SubName: Full=RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a;
InterProE1P603 
PFAME1P603 
ProdomE1P603 
UniProtKBH0UI71SubName: Full=RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a;
InterProH0UI71 
PFAMH0UI71 
ProdomH0UI71 
UniProtKBQ9H0Z9RecName: Full=RNA-binding protein 38;AltName: Full=RNA-binding motif protein 38;AltName: Full=RNA-binding region-containing protein 1;AltName: Full=HSRNASEB;AltName: Full=ssDNA-binding protein SEB4;Al
InterProQ9H0Z9 
PFAMQ9H0Z9 
ProdomQ9H0Z9 
UniProtKBQ15350RecName: Full=RNA-binding protein 38;AltName: Full=RNA-binding motif protein 38;AltName: Full=RNA-binding region-containing protein 1;AltName: Full=HSRNASEB;AltName: Full=ssDNA-binding protein SEB4;Al
InterProQ15350 
PFAMQ15350 
ProdomQ15350 
UniProtKBQ15351RecName: Full=RNA-binding protein 38;AltName: Full=RNA-binding motif protein 38;AltName: Full=RNA-binding region-containing protein 1;AltName: Full=HSRNASEB;AltName: Full=ssDNA-binding protein SEB4;Al
InterProQ15351 
PFAMQ15351 
ProdomQ15351 
UniProtKBQ9BYK3RecName: Full=RNA-binding protein 38;AltName: Full=RNA-binding motif protein 38;AltName: Full=RNA-binding region-containing protein 1;AltName: Full=HSRNASEB;AltName: Full=ssDNA-binding protein SEB4;Al
InterProQ9BYK3 
PFAMQ9BYK3 
ProdomQ9BYK3 
UniProtKBQ9BYK4RecName: Full=RNA-binding protein 38;AltName: Full=RNA-binding motif protein 38;AltName: Full=RNA-binding region-containing protein 1;AltName: Full=HSRNASEB;AltName: Full=ssDNA-binding protein SEB4;Al
InterProQ9BYK4 
PFAMQ9BYK4 
ProdomQ9BYK4 
GenPept119595926RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a
GenPept28201883RBM38_HUMAN RNA-binding protein 38 (RNA-binding motif protein 38) (RNA-binding region-containing protein 1) (HSRNASEB) (ssDNA-binding protein SEB4) (CLL-associated antigen KW-5)
GenPept14786450 seb4D [Homo sapiens]
GenPept14192947 seb4D [Homo sapiens]
GenPept123997017RNA binding motif protein 38, partial
GenPept123982260RNA binding motif protein 38
GenPept14786452 seb4D [Homo sapiens]
GenPept17511712RBM38 protein
GenPept12140497RNPC1
GenPept19851930AF432218_1 CLL-associated antigen KW-5
GenPept119595927RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a
GenBankAAH18711.1 RBM38 protein [Homo sapiens]
GenBankABM82920.1 RNA binding motif protein 38 [synthetic construct]
GenBankEAW75521.1 RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a [Homo sapiens]
GenBankEAW75520.1 RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a [Homo sapiens]
GenBankABM86110.1 RNA binding motif protein 38 [synthetic construct]
GenBankAAL99924.1AF432218_1 CLL-associated antigen KW-5 [Homo sapiens]
ENSEMBLENSP00000348538RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). [Homo sapiens]
UCSCGenomeBrowserQ9H0Z9 
ENSEMBLENSP00000348538 
ENSEMBLENSP00000348538TDI sequence