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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link Q04206
Original Database ID Custom ID
Organism Homo sapiens
Annotation transcription factor p65 (nuclear
factor nf-kappa-b p65 subunit)
Sequence Length 551

Dataset Information:

The newest dataset for this sequence was created on 2018-11-16. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region20-314
Protein Length551
Template PDB Code1nfiA
Template Region20-314
Sequence Identity100%
E-Value0
GA3411
MPQS1.68939
z-DOPE-0.79
TSVMod MethodMTALL
TSVMod RMSD1.981
TSVMod NO350.966
DatasetMW-update_D8071
ModPipe VersionSVN.r1620
Model Date2018-11-16

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Cross-references

Show obsolete/secondary identifiers
Mutation Data
PharmGKB   PharmGKB data available for RELA
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB1nfii-kappa-b-alpha/nf-kappa-b complex ; PFAM: PF00554 PF01833 ; SCOP: 21942 22455
DBALI1nfiA 
CATH2.60.40.340 Domain: 1nfiA01 Immunoglobulin-like (100%)
CATH2.60.40.10 Domain: 1nfiA02 Immunoglobulins (100%)
JenaImageLibrary1nfi 
Target Sequence
UniProtKBQ04206Transcription factor p65 (Nuclear factor NF-kappa-B p65 subunit)
InterProQ04206 
PFAMQ04206 
ProdomQ04206 
RefSeqNP_068810.2 v-rel reticuloendotheliosis viral oncogene homolog A, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3, p65 [Homo sapiens]
GenPept568534856Sequence 22481 from patent US 8586006
GenPept46430499 v-rel reticuloendotheliosis viral oncogene homolog A, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3, p65 [Homo sapiens]
GenPept417924TF65_HUMAN TRANSCRIPTION FACTOR P65 (NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT)
GenPept367486332Sequence 2 from patent US 8080384
GenPept311461796unnamed protein product
GenPept189504NF-kappa-B transcription factor
GenPept144994781Sequence 4 from patent US 7189506
GenPept107962A40851 transforming protein (rel) homolog - human
GenBankAAA36408.1 NF-kappa-B transcription factor [Homo sapiens]