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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link P75717
Original Database ID UP P75717
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation dlp12 prophage; predicted exonuclease
(ec 3.1.11.3)
Sequence Length 87

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region1-87
Protein Length87
Template PDB Code3sm4A
Template Region140-226
Sequence Identity97%
E-Value0
GA3411
MPQS2.0562
z-DOPE0.05
TSVMod MethodMSALL
TSVMod RMSD1.599
TSVMod NO350.986
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3sm4
DBALI3sm4A 
JenaImageLibrary3sm4 
Target Sequence
UniProtKBQ2MBP2RecName: Full=Putative uncharacterized protein ExoD;
InterProQ2MBP2 
PFAMQ2MBP2 
ProdomQ2MBP2 
UniProtKBA0A0H4IAM3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKO56049.1};
InterProA0A0H4IAM3 
PFAMA0A0H4IAM3 
ProdomA0A0H4IAM3 
UniProtKBB1XGD5SubName: Full=DLP12 prophage; predicted exonuclease;
InterProB1XGD5 
PFAMB1XGD5 
ProdomB1XGD5 
UniProtKBF9R4J1SubName: Full=Phage exonuclease;
InterProF9R4J1 
PFAMF9R4J1 
ProdomF9R4J1 
UniProtKBG2FAM0SubName: Full=Phage exonuclease;
InterProG2FAM0 
PFAMG2FAM0 
ProdomG2FAM0 
UniProtKBH5G9J5SubName: Full=Exonuclease;EC=3.1.11.3;
InterProH5G9J5 
PFAMH5G9J5 
ProdomH5G9J5 
UniProtKBI5UUI4SubName: Full=Exonuclease;EC=3.1.11.3;
InterProI5UUI4 
PFAMI5UUI4 
ProdomI5UUI4 
UniProtKBL1AP26SubName: Full=Exonuclease domain protein;EC=3.1.11.3;
InterProL1AP26 
PFAML1AP26 
ProdomL1AP26 
UniProtKBM2MX70SubName: Full=Phage exonuclease;
InterProM2MX70 
PFAMM2MX70 
ProdomM2MX70 
UniProtKBA0A0G3HQX6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKK13547.1};
InterProA0A0G3HQX6 
PFAMA0A0G3HQX6 
ProdomA0A0G3HQX6 
UniProtKBP75717RecName: Full=Putative uncharacterized protein ExoD;
InterProP75717 
PFAMP75717 
ProdomP75717 
UniProtKBP75717DLP12 prophage; predicted exonuclease (EC 3.1.11.3)
InterProP75717 
PFAMP75717 
ProdomP75717 
UniProtKBA0A507W4C6SubName: Full=YqaJ viral recombinase family protein {ECO:0000313|EMBL:TQC94976.1}
InterProA0A507W4C6 
PFAMA0A507W4C6 
ProdomA0A507W4C6 
UniProtKBF9R4J1SubName: Full=Phage exonuclease;
InterProF9R4J1 
PFAMF9R4J1 
ProdomF9R4J1 
UniProtKBB1XGD5SubName: Full=DLP12 prophage; predicted exonuclease;
InterProB1XGD5 
PFAMB1XGD5 
ProdomB1XGD5 
UniProtKBQ2MBP2Predicted exonuclease
InterProQ2MBP2 
PFAMQ2MBP2 
ProdomQ2MBP2 
UniProtKBA0A4U3JWA6SubName: Full=DLP12 prophage exonuclease {ECO:0000313|EMBL:VTQ23427.1}
InterProA0A4U3JWA6 
PFAMA0A4U3JWA6 
ProdomA0A4U3JWA6 
UniProtKBG2FAM0SubName: Full=Phage exonuclease;
InterProG2FAM0 
PFAMG2FAM0 
ProdomG2FAM0 
UniProtKBI5UUI4SubName: Full=Exonuclease;EC=3.1.11.3;
InterProI5UUI4 
PFAMI5UUI4 
ProdomI5UUI4 
UniProtKBH5G9J5SubName: Full=Exonuclease;EC=3.1.11.3;
InterProH5G9J5 
PFAMH5G9J5 
ProdomH5G9J5 
UniProtKBP75717RecName: Full=Putative uncharacterized protein ExoD;
InterProP75717 
PFAMP75717 
ProdomP75717 
UniProtKBQ2MBP2RecName: Full=Putative uncharacterized protein ExoD;
InterProQ2MBP2 
PFAMQ2MBP2 
ProdomQ2MBP2 
UniProtKBP75717.1YBCC_ECOLI RecName: Full=Putative uncharacterized protein ybCC
InterProP75717.1 
PFAMP75717.1 
ProdomP75717.1 
RefSeqYP_001729440.1 DLP12 prophage; exonuclease [Escherichia coli str. K-12 substr. DH10B]
RefSeqAP_001184.1 predicted exonuclease [Escherichia coli str. K-12 substr. W3110]
GenPept808699316hypothetical protein SH05_06490
GenPept7466108A64786 hypothetical protein b0539 - Escherichia coli
GenPept732685519hypothetical protein EO53_15595
GenPept687671464DLP12 prophage; predicted exonuclease
GenPept687675723DLP12 prophage; predicted exonuclease
GenPept664682959hypothetical protein HQ24_02675
GenPept1786750DLP12 prophage; predicted exonuclease
GenPept170080120 DLP12 prophage; exonuclease [Escherichia coli str. K-12 substr. DH10B]
GenPept169887955DLP12 prophage; predicted exonuclease
GenPept16128522 (NC_000913) putative exonuclease (EC 3.1.11.3) similar to lambda [Escherichia coli K12]
GenPept808703687hypothetical protein SH02_06445
GenPept808708066hypothetical protein SH08_06490
GenPept85674674predicted exonuclease
GenPept827621122Putative uncharacterized protein ExoD protein
GenPept81345779YBCC_ECOLI RecName: Full=Putative uncharacterized protein ybCC
GenPept808733939hypothetical protein SF31_06785
GenPept827617564Putative uncharacterized protein ExoD protein
GenPept808729528hypothetical protein SH07_06475
GenPept808721207hypothetical protein SH04_06470
GenPept808716837hypothetical protein SH06_06785
GenPept808712426hypothetical protein SH03_06480
GenPept89107404 predicted exonuclease [Escherichia coli str. K-12 substr. W3110]
GenBankACB01662.1 DLP12 prophage; predicted exonuclease [Escherichia coli str. K-12 substr. DH10B]