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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link 2654535
Original Database ID UP O15379
Organism Rousettus aegyptiacus, Macaca mulatta, etc.
Annotation histone deacetylase-3c
Sequence Length 371

Dataset Information:

The newest dataset for this sequence was created on 2013-06-24. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region1-313
Protein Length371
Template PDB Code4a69A
Template Region58-370
Sequence Identity100%
E-Value0
GA3411
MPQS2.11257
z-DOPE-1.74
TSVMod MethodMSALL
TSVMod RMSD0.334
TSVMod NO350.962
DatasetEFI_update-20130509-01-1235
ModPipe VersionSVN.r1409M
Model Date2013-06-24

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB4a69
DBALI4a69A 
JenaImageLibrary4a69 
Target Sequence
UniProtKBF7FDY7SubName: Full=Uncharacterized protein {ECO:0000313|Ensembl:ENSMMUP00000016525};
InterProF7FDY7 
PFAMF7FDY7 
ProdomF7FDY7 
UniProtKBA0A833YVS4SubName: Full=Histone deacetylase 3 {ECO:0000313|EMBL:KAF6081374.1}
InterProA0A833YVS4 
PFAMA0A833YVS4 
ProdomA0A833YVS4 
UniProtKBA0A8B7TVN0SubName: Full=histone deacetylase 3 isoform X2 {ECO:0000313|RefSeq:XP_020011624.1}
InterProA0A8B7TVN0 
PFAMA0A8B7TVN0 
ProdomA0A8B7TVN0 
UniProtKBA0A8B7T0C8SubName: Full=histone deacetylase 3 {ECO:0000313|RefSeq:XP_019518529.1}
InterProA0A8B7T0C8 
PFAMA0A8B7T0C8 
ProdomA0A8B7T0C8 
UniProtKBF7FDY7SubName: Full=Uncharacterized protein;
InterProF7FDY7 
PFAMF7FDY7 
ProdomF7FDY7 
UniProtKBA0A7J8FH25Histone deacetylase {ECO:0000256|ARBA:ARBA00012111}EC=3.5.1.98 {ECO:0000256|ARBA:ARBA00012111}
InterProA0A7J8FH25 
PFAMA0A7J8FH25 
ProdomA0A7J8FH25 
UniProtKBA0A7J7XGA8Histone deacetylase {ECO:0000256|ARBA:ARBA00012111}EC=3.5.1.98 {ECO:0000256|ARBA:ARBA00012111}
InterProA0A7J7XGA8 
PFAMA0A7J7XGA8 
ProdomA0A7J7XGA8 
UniProtKBA0A3Q7WL05Histone deacetylase {ECO:0000256|ARBA:ARBA00012111}EC=3.5.1.98 {ECO:0000256|ARBA:ARBA00012111}
InterProA0A3Q7WL05 
PFAMA0A3Q7WL05 
ProdomA0A3Q7WL05 
UniProtKBA0A384C5H6Histone deacetylase {ECO:0000256|ARBA:ARBA00012111}EC=3.5.1.98 {ECO:0000256|ARBA:ARBA00012111}
InterProA0A384C5H6 
PFAMA0A384C5H6 
ProdomA0A384C5H6 
UniProtKBA0A2Y9I1Z2Histone deacetylase {ECO:0000256|ARBA:ARBA00012111}EC=3.5.1.98 {ECO:0000256|ARBA:ARBA00012111}
InterProA0A2Y9I1Z2 
PFAMA0A2Y9I1Z2 
ProdomA0A2Y9I1Z2 
RefSeqXP_001094174.1 PREDICTED: similar to histone deacetylase 3 isoform 2 [Macaca mulatta]
RefSeqXP_001151433.1 PREDICTED: similar to histone deacetylase-3C isoform 4 [Pan troglodytes]
RefSeqXP_017196628.1PREDICTED: histone deacetylase 3 isoform X2
RefSeqXP_019518529.1PREDICTED: histone deacetylase 3
RefSeqXP_036168506.1histone deacetylase 3 isoform X2
RefSeqXP_020011624.1histone deacetylase 3 isoform X2
RefSeqXP_032484402.1histone deacetylase 3 isoform X3
RefSeqXP_035972274.1histone deacetylase 3 isoform X4
RefSeqXP_011945978.1PREDICTED: histone deacetylase 3 isoform X2
GenPept109079090 PREDICTED: similar to histone deacetylase 3 isoform 2 [Macaca mulatta]
GenPept2654535histone deacetylase-3C
GenPept119582322histone deacetylase 3, isoform CRA_c
GenPept114602418 PREDICTED: similar to histone deacetylase-3C isoform 4 [Pan troglodytes]
GenBankEAW61918.1 histone deacetylase 3, isoform CRA_c [Homo sapiens]
GenBankAAB87752.1 histone deacetylase-3C [Homo sapiens]