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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link Q32J95.2
Original Database ID UP P77688
Organism Escherichia coli, Shigella dysenteriae, etc.
Annotation ylbg_shids recname: full=uncharacterized
protein ylbg
Sequence Length 123

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region2-120
Protein Length123
Template PDB Code6paxA
Template Region13-133
Sequence Identity13%
E-Value0
GA3410.16
MPQS1.03138
z-DOPE-0.08
TSVMod MethodMTALL
TSVMod RMSD12.053
TSVMod NO350.311
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

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Cross-references

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Template Structure
PDB6paxcrystal structure of the human pax-6 paired domain-dna complex reveals a general model for pax protein-dna interactions ; PFAM: PF00292 ; SCOP: 64758 64759
DBALI6paxA 
CATH1.10.10.10 Domain: 6paxA01 "winged helix" repressor DNA binding domain (84%)
CATH1.10.10.10 Domain: 6paxA02 "winged helix" repressor DNA binding domain (100%)
JenaImageLibrary6pax 
Target Sequence
UniProtKBE0J607SubName: Full=Putative rhs C-terminal tip {ECO:0000313|EMBL:ADT74104.1};SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFH10238.1};
InterProE0J607 
PFAME0J607 
ProdomE0J607 
UniProtKBA0A069Z1N3SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDU53481.1};
InterProA0A069Z1N3 
PFAMA0A069Z1N3 
ProdomA0A069Z1N3 
UniProtKBA0A070D4P4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDV35976.1};
InterProA0A070D4P4 
PFAMA0A070D4P4 
ProdomA0A070D4P4 
UniProtKBA0A070Y005SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDX84917.1};
InterProA0A070Y005 
PFAMA0A070Y005 
ProdomA0A070Y005 
UniProtKBA0A071ATU1SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDY58793.1};
InterProA0A071ATU1 
PFAMA0A071ATU1 
ProdomA0A071ATU1 
UniProtKBA0A071CFQ3SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDY92736.1};
InterProA0A071CFQ3 
PFAMA0A071CFQ3 
ProdomA0A071CFQ3 
UniProtKBA0A071D5M4SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDZ36669.1};
InterProA0A071D5M4 
PFAMA0A071D5M4 
ProdomA0A071D5M4 
UniProtKBA0A074I385SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KEO01328.1};
InterProA0A074I385 
PFAMA0A074I385 
ProdomA0A074I385 
UniProtKBA0A074IMR3SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KEO15846.1};
InterProA0A074IMR3 
PFAMA0A074IMR3 
ProdomA0A074IMR3 
UniProtKBA0A079CIC6SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDY10300.1};
InterProA0A079CIC6 
PFAMA0A079CIC6 
ProdomA0A079CIC6 
UniProtKBA0A079F0K5SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDY50215.1};
InterProA0A079F0K5 
PFAMA0A079F0K5 
ProdomA0A079F0K5 
UniProtKBA0A069WWH8SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDU21925.1};
InterProA0A069WWH8 
PFAMA0A069WWH8 
ProdomA0A069WWH8 
UniProtKBA0A037Y0W6SubName: Full=DNA-binding transcriptional regulator {ECO:0000313|EMBL:CEE06555.1};SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:KLX37247.1};SubName: Full=Uncharacterized protein {ECO:00003
InterProA0A037Y0W6 
PFAMA0A037Y0W6 
ProdomA0A037Y0W6 
UniProtKBE8I4G0SubName: Full=Uncharacterized protein;
InterProE8I4G0 
PFAME8I4G0 
ProdomE8I4G0 
UniProtKBH4N1Z9SubName: Full=Putative transposase;
InterProH4N1Z9 
PFAMH4N1Z9 
ProdomH4N1Z9 
UniProtKBH4RB12SubName: Full=Putative transposase;
InterProH4RB12 
PFAMH4RB12 
ProdomH4RB12 
UniProtKBE1I2S7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK73386.1};
InterProE1I2S7 
PFAME1I2S7 
ProdomE1I2S7 
UniProtKBE2XBU4SubName: Full=ISSod13, transposase {ECO:0000313|EMBL:EFP70710.1};
InterProE2XBU4 
PFAME2XBU4 
ProdomE2XBU4 
UniProtKBH4QCW1SubName: Full=Putative transposase;
InterProH4QCW1 
PFAMH4QCW1 
ProdomH4QCW1 
UniProtKBH4S721SubName: Full=Putative transposase;
InterProH4S721 
PFAMH4S721 
ProdomH4S721 
UniProtKBE7HJF1SubName: Full=Putative transposase;
InterProE7HJF1 
PFAME7HJF1 
ProdomE7HJF1 
UniProtKBH4SN38SubName: Full=Putative transposase;
InterProH4SN38 
PFAMH4SN38 
ProdomH4SN38 
UniProtKBE7ISC1SubName: Full=Putative transposase;
InterProE7ISC1 
PFAME7ISC1 
ProdomE7ISC1 
UniProtKBE7TK50SubName: Full=Putative uncharacterized protein;
InterProE7TK50 
PFAME7TK50 
ProdomE7TK50 
UniProtKBA0A080GXT7SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KEN92275.1};
InterProA0A080GXT7 
PFAMA0A080GXT7 
ProdomA0A080GXT7 
UniProtKBA0A080IMZ3SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KEO28198.1};
InterProA0A080IMZ3 
PFAMA0A080IMZ3 
ProdomA0A080IMZ3 
UniProtKBG2F8A2SubName: Full=Putative uncharacterized protein;
InterProG2F8A2 
PFAMG2F8A2 
ProdomG2F8A2 
UniProtKBC6UBW6SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC6UBW6 
PFAMC6UBW6 
ProdomC6UBW6 
UniProtKBG0FD06SubName: Full=ISSod13, transposase {ECO:0000313|EMBL:AEJ55122.1};
InterProG0FD06 
PFAMG0FD06 
ProdomG0FD06 
UniProtKBE8IHL5SubName: Full=Uncharacterized protein;
InterProE8IHL5 
PFAME8IHL5 
ProdomE8IHL5 
UniProtKBC8U2I4SubName: Full=Predicted DNA-binding transcriptional regulator {ECO:0000313|EMBL:BAI29342.1};
InterProC8U2I4 
PFAMC8U2I4 
ProdomC8U2I4 
UniProtKBH4MLN3SubName: Full=Putative transposase;
InterProH4MLN3 
PFAMH4MLN3 
ProdomH4MLN3 
UniProtKBD7ZRU3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK26375.1};
InterProD7ZRU3 
PFAMD7ZRU3 
ProdomD7ZRU3 
UniProtKBD8APF2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK14977.1};
InterProD8APF2 
PFAMD8APF2 
ProdomD8APF2 
UniProtKBA0A024KVF0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDP68855.1};
InterProA0A024KVF0 
PFAMA0A024KVF0 
ProdomA0A024KVF0 
UniProtKBA0A025GGH6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYV62716.1};
InterProA0A025GGH6 
PFAMA0A025GGH6 
ProdomA0A025GGH6 
UniProtKBC5W0F7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT30155.1};
InterProC5W0F7 
PFAMC5W0F7 
ProdomC5W0F7 
UniProtKBG2B5T0SubName: Full=Putative transposase;
InterProG2B5T0 
PFAMG2B5T0 
ProdomG2B5T0 
UniProtKBB6ZPI2SubName: Full=Transposase, IS481 family;
InterProB6ZPI2 
PFAMB6ZPI2 
ProdomB6ZPI2 
UniProtKBA0A0A8UIP1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CEK08672.1};
InterProA0A0A8UIP1 
PFAMA0A0A8UIP1 
ProdomA0A0A8UIP1 
UniProtKBA0A0E0TUE8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE55200.1};
InterProA0A0E0TUE8 
PFAMA0A0E0TUE8 
ProdomA0A0E0TUE8 
UniProtKBA0A0G3HNN0SubName: Full=Uncharacterized protein YlbG protein {ECO:0000313|EMBL:AKK13578.1};
InterProA0A0G3HNN0 
PFAMA0A0G3HNN0 
ProdomA0A0G3HNN0 
UniProtKBE8Y7V1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ADX51923.1};
InterProE8Y7V1 
PFAME8Y7V1 
ProdomE8Y7V1 
UniProtKBE8JB32SubName: Full=Putative uncharacterized protein;
InterProE8JB32 
PFAME8JB32 
ProdomE8JB32 
UniProtKBE8HQG9SubName: Full=Uncharacterized protein;
InterProE8HQG9 
PFAME8HQG9 
ProdomE8HQG9 
UniProtKBF1Y087SubName: Full=Putative uncharacterized protein;
InterProF1Y087 
PFAMF1Y087 
ProdomF1Y087 
UniProtKBE8IVR4SubName: Full=Uncharacterized protein;
InterProE8IVR4 
PFAME8IVR4 
ProdomE8IVR4 
UniProtKBG1ZFD6SubName: Full=Putative transposase;
InterProG1ZFD6 
PFAMG1ZFD6 
ProdomG1ZFD6 
UniProtKBE8HBP5SubName: Full=Uncharacterized protein;
InterProE8HBP5 
PFAME8HBP5 
ProdomE8HBP5 
UniProtKBA0A026GQL5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYY72982.1};
InterProA0A026GQL5 
PFAMA0A026GQL5 
ProdomA0A026GQL5 
UniProtKBH4NIH5SubName: Full=Putative transposase;
InterProH4NIH5 
PFAMH4NIH5 
ProdomH4NIH5 
UniProtKBA0A026UGT6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZA28782.1};
InterProA0A026UGT6 
PFAMA0A026UGT6 
ProdomA0A026UGT6 
UniProtKBE1IW69SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFO56469.1};
InterProE1IW69 
PFAME1IW69 
ProdomE1IW69 
UniProtKBA0A028BUC1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZE27017.1};
InterProA0A028BUC1 
PFAMA0A028BUC1 
ProdomA0A028BUC1 
UniProtKBA0A070F7Q0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDV61528.1};
InterProA0A070F7Q0 
PFAMA0A070F7Q0 
ProdomA0A070F7Q0 
UniProtKBA0A073TD73SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KEL25787.1};
InterProA0A073TD73 
PFAMA0A073TD73 
ProdomA0A073TD73 
UniProtKBA0A079FX50SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDY63813.1};
InterProA0A079FX50 
PFAMA0A079FX50 
ProdomA0A079FX50 
UniProtKBA0A0E3KEB5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKA89487.1};
InterProA0A0E3KEB5 
PFAMA0A0E3KEB5 
ProdomA0A0E3KEB5 
UniProtKBF9R4M5SubName: Full=Putative uncharacterized protein;
InterProF9R4M5 
PFAMF9R4M5 
ProdomF9R4M5 
UniProtKBB1XFT7SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProB1XFT7 
PFAMB1XFT7 
ProdomB1XFT7 
UniProtKBC6EKW3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT30155.1};
InterProC6EKW3 
PFAMC6EKW3 
ProdomC6EKW3 
UniProtKBC9QQ19SubName: Full=Uncharacterized protein;
InterProC9QQ19 
PFAMC9QQ19 
ProdomC9QQ19 
UniProtKBD8BVR7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFI89237.1};
InterProD8BVR7 
PFAMD8BVR7 
ProdomD8BVR7 
UniProtKBH4LML4SubName: Full=Putative transposase;
InterProH4LML4 
PFAMH4LML4 
ProdomH4LML4 
UniProtKBA0A027TXC9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZD29965.1};
InterProA0A027TXC9 
PFAMA0A027TXC9 
ProdomA0A027TXC9 
UniProtKBH1F8V6SubName: Full=Putative uncharacterized protein;
InterProH1F8V6 
PFAMH1F8V6 
ProdomH1F8V6 
UniProtKBA0A027Z1A9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZD92267.1};
InterProA0A027Z1A9 
PFAMA0A027Z1A9 
ProdomA0A027Z1A9 
UniProtKBA0A0E1ZVL6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIL36367.1};
InterProA0A0E1ZVL6 
PFAMA0A0E1ZVL6 
ProdomA0A0E1ZVL6 
UniProtKBC8UIT2SubName: Full=Predicted DNA-binding transcriptional regulator {ECO:0000313|EMBL:BAI34510.1};
InterProC8UIT2 
PFAMC8UIT2 
ProdomC8UIT2 
UniProtKBH4QUH1SubName: Full=Putative transposase;
InterProH4QUH1 
PFAMH4QUH1 
ProdomH4QUH1 
UniProtKBA0A027ZPK3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZE00649.1};
InterProA0A027ZPK3 
PFAMA0A027ZPK3 
ProdomA0A027ZPK3 
UniProtKBA0A073GY46SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KEJ70708.1};
InterProA0A073GY46 
PFAMA0A073GY46 
ProdomA0A073GY46 
UniProtKBA0A0E2U883SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZE26977.1};
InterProA0A0E2U883 
PFAMA0A0E2U883 
ProdomA0A0E2U883 
UniProtKBG2AQV5SubName: Full=Putative transposase;
InterProG2AQV5 
PFAMG2AQV5 
ProdomG2AQV5 
UniProtKBH4P0B7SubName: Full=Putative transposase;
InterProH4P0B7 
PFAMH4P0B7 
ProdomH4P0B7 
UniProtKBH4PEZ6SubName: Full=Putative transposase;
InterProH4PEZ6 
PFAMH4PEZ6 
ProdomH4PEZ6 
UniProtKBE1HV85SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK88176.1};
InterProE1HV85 
PFAME1HV85 
ProdomE1HV85 
UniProtKBA0A0F6C038SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFJ27594.1};
InterProA0A0F6C038 
PFAMA0A0F6C038 
ProdomA0A0F6C038 
UniProtKBF1XSN6SubName: Full=Putative uncharacterized protein;
InterProF1XSN6 
PFAMF1XSN6 
ProdomF1XSN6 
UniProtKBF4M776SubName: Full=Putative uncharacterized protein;
InterProF4M776 
PFAMF4M776 
ProdomF4M776 
UniProtKBG1Z0J4SubName: Full=Putative transposase;
InterProG1Z0J4 
PFAMG1Z0J4 
ProdomG1Z0J4 
UniProtKBG2ABR3SubName: Full=Putative transposase {ECO:0000313|EMBL:EGW97096.1};
InterProG2ABR3 
PFAMG2ABR3 
ProdomG2ABR3 
UniProtKBG2BJV8SubName: Full=Putative transposase;
InterProG2BJV8 
PFAMG2BJV8 
ProdomG2BJV8 
UniProtKBG2CGF1SubName: Full=Putative transposase;
InterProG2CGF1 
PFAMG2CGF1 
ProdomG2CGF1 
UniProtKBC8TJ90SubName: Full=Predicted DNA-binding transcriptional regulator {ECO:0000313|EMBL:BAI23871.1};
InterProC8TJ90 
PFAMC8TJ90 
ProdomC8TJ90 
UniProtKBD7YMM4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK01439.1};
InterProD7YMM4 
PFAMD7YMM4 
ProdomD7YMM4 
UniProtKBH4M435SubName: Full=Putative transposase;
InterProH4M435 
PFAMH4M435 
ProdomH4M435 
UniProtKBA0A0A0FC96SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGM59968.1};
InterProA0A0A0FC96 
PFAMA0A0A0FC96 
ProdomA0A0A0FC96 
UniProtKBA0A079GY37SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDY95999.1};
InterProA0A079GY37 
PFAMA0A079GY37 
ProdomA0A079GY37 
UniProtKBA0A075L4Z9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AIF61644.1};
InterProA0A075L4Z9 
PFAMA0A075L4Z9 
ProdomA0A075L4Z9 
UniProtKBH4RR10SubName: Full=Putative transposase;
InterProH4RR10 
PFAMH4RR10 
ProdomH4RR10 
UniProtKBE3PGD5SubName: Full=Predicted DNA-binding transcriptional regulator {ECO:0000313|EMBL:CBJ00061.1};
InterProE3PGD5 
PFAME3PGD5 
ProdomE3PGD5 
UniProtKBE7HW93SubName: Full=Putative transposase;
InterProE7HW93 
PFAME7HW93 
ProdomE7HW93 
UniProtKBH4PW96SubName: Full=Putative transposase;
InterProH4PW96 
PFAMH4PW96 
ProdomH4PW96 
UniProtKBA0A028DK30SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZE48296.1};
InterProA0A028DK30 
PFAMA0A028DK30 
ProdomA0A028DK30 
UniProtKBA0A069XNN9SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDU31402.1};
InterProA0A069XNN9 
PFAMA0A069XNN9 
ProdomA0A069XNN9 
UniProtKBA0A070UH41SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDX41110.1};
InterProA0A070UH41 
PFAMA0A070UH41 
ProdomA0A070UH41 
UniProtKBA0A071CE16SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KDZ17147.1};
InterProA0A071CE16 
PFAMA0A071CE16 
ProdomA0A071CE16 
UniProtKBA0A073VM63SubName: Full=Helix-turn-helix domain protein {ECO:0000313|EMBL:KEL81493.1};
InterProA0A073VM63 
PFAMA0A073VM63 
ProdomA0A073VM63 
UniProtKBD8AXF6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ68474.1};
InterProD8AXF6 
PFAMD8AXF6 
ProdomD8AXF6