University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P09980
Original Database ID gi 3318688
Organism Escherichia coli, Escherichia coli K-12
Annotation atp-dependent dna helicase rep
(ec 3.6.1.-)
Sequence Length 673

Dataset Information:

The newest dataset for this sequence was created on 2004-10-12. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region2-640
Protein Length673
Template PDB Code1uaaA
Template Region2-640
Sequence Identity100%
E-Value1e-144
GA3411
DatasetSP/TR-2004
ModPipe VersionModPipe1.0
Model Date2004-10-12

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1uaae. coli rep helicase/dna complex ; PFAM: PF00580 ; SCOP: 32401 32402
DBALI1uaaA 
CATH3.40.50.300 Domain: 1uaaA01 P-loop containing nucleotide triphosphate hydrolases (100%)
CATH1.10.10.160 Domain: 1uaaA02 Arc Repressor Mutant, subunit A (100%)
CATH3.40.50.300 Domain: 1uaaA03 P-loop containing nucleotide triphosphate hydrolases (100%)
CATH1.10.486.10 Domain: 1uaaA04 PCRA; domain 4 (100%)
JenaImageLibrary1uaa 
Target Sequence
UniProtKBP09980ATP-dependent DNA helicase rep (EC 3.6.1.-)
InterProP09980 
PFAMP09980 
ProdomP09980 
PDB1UAABChain B, E. Coli Rep HelicaseDNA COMPLEX
PDB1UAAAChain A, E. Coli Rep HelicaseDNA COMPLEX
PDB1UAAB Chain B, E. Coli Rep HelicaseDNA COMPLEX
GenPept1790212rep helicase, a single-stranded DNA dependent ATPase
GenPept7428311HJECDR ATP-dependent DNA helicase Rep (EC 3.6.1.-) - Escherichia coli (strain K-12)
GenPept63088891unnamed protein product
GenPept33757350Sequence 328 from patent US 6589738
GenPept3318689B Chain B, E. Coli Rep HelicaseDNA COMPLEX
GenPept3318688A Chain A, E. Coli Rep HelicaseDNA COMPLEX
GenPept148182rep helicase
GenPept16131634 (NC_000913) rep helicase, a single-stranded DNA dependent ATPase [Escherichia coli K12]
GenPept167296815Sequence 23617 from patent US 7314974
GenPept132378REP_ECOLI ATP-DEPENDENT DNA HELICASE REP
GenBankAAA67579.1 rep helicase [Escherichia coli str. K-12 substr. MG1655]