University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P31449.1
Original Database ID gi 16131550
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation yidl_ecoli recname: full=uncharacterized
hth-type transcriptional regulator
yidl
Sequence Length 307

Dataset Information:

The newest dataset for this sequence was created on 2006-10-17. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region64-185
Protein Length307
Template PDB Code2arcA
Template Region37-165
Sequence Identity18%
E-Value 3.6e-05
GA3410.87
MPQS0.71
z-DOPE-1.25
DatasetE.coli_1
ModPipe VersionModPipe2.0
Model Date2006-10-17

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2arcescherichia coli regulatory protein arac complexed with l-arabinose ; PFAM: PF02311 ; SCOP: 28148
DBALI2arcA 
CATH2.60.120.280 Domain: 2arcA00 Jelly Rolls (80%)
JenaImageLibrary2arc 
Target Sequence
UniProtKBI4RWS3SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI4RWS3 
PFAMI4RWS3 
ProdomI4RWS3 
UniProtKBJ7RYE5SubName: Full=Putative ARAC-type regulatory protein {ECO:0000313|EMBL:CCK48995.1};
InterProJ7RYE5 
PFAMJ7RYE5 
ProdomJ7RYE5 
UniProtKBJ7R7R7SubName: Full=Putative ARAC-type regulatory protein {ECO:0000313|EMBL:CCJ46311.1};
InterProJ7R7R7 
PFAMJ7R7R7 
ProdomJ7R7R7 
UniProtKBC6VCX9SubName: Full=Predicted DNA-binding transcriptional regulator;SubName: Full=Putative ARAC-type regulatory protein;
InterProC6VCX9 
PFAMC6VCX9 
ProdomC6VCX9 
UniProtKBC5WAS4SubName: Full=Predicted DNA-binding transcriptional regulator;SubName: Full=Putative ARAC-type regulatory protein;
InterProC5WAS4 
PFAMC5WAS4 
ProdomC5WAS4 
UniProtKBC4ZYW0SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC4ZYW0 
PFAMC4ZYW0 
ProdomC4ZYW0 
UniProtKBB7M4G9SubName: Full=Putative DNA-binding transcriptional regulator;
InterProB7M4G9 
PFAMB7M4G9 
ProdomB7M4G9 
UniProtKBB7L821SubName: Full=YidL protein {ECO:0000313|EMBL:CAV00721.1};
InterProB7L821 
PFAMB7L821 
ProdomB7L821 
UniProtKBB6I3R3SubName: Full=Putative transcriptional regulator {ECO:0000313|EMBL:BAG79490.1};
InterProB6I3R3 
PFAMB6I3R3 
ProdomB6I3R3 
UniProtKBB1X9B3SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProB1X9B3 
PFAMB1X9B3 
ProdomB1X9B3 
UniProtKBK4XZV1SubName: Full=Putative DNA-binding transcriptional regulator;
InterProK4XZV1 
PFAMK4XZV1 
ProdomK4XZV1 
UniProtKBK4X8B8SubName: Full=Putative DNA-binding transcriptional regulator;
InterProK4X8B8 
PFAMK4X8B8 
ProdomK4X8B8 
UniProtKBK4X6P1SubName: Full=Putative DNA-binding transcriptional regulator;
InterProK4X6P1 
PFAMK4X6P1 
ProdomK4X6P1 
UniProtKBK4VZJ8SubName: Full=Putative DNA-binding transcriptional regulator {ECO:0000313|EMBL:EJE88175.1};
InterProK4VZJ8 
PFAMK4VZJ8 
ProdomK4VZJ8 
UniProtKBK4V132SubName: Full=DNA-binding transcriptional regulator;
InterProK4V132 
PFAMK4V132 
ProdomK4V132 
UniProtKBA0A0E2A473SubName: Full=Putative DNA-binding transcriptional regulator {ECO:0000313|EMBL:EIL42664.1};
InterProA0A0E2A473 
PFAMA0A0E2A473 
ProdomA0A0E2A473 
UniProtKBK0AFL5SubName: Full=Putative DNA-binding transcriptional regulator;
InterProK0AFL5 
PFAMK0AFL5 
ProdomK0AFL5 
UniProtKBD6I2U4SubName: Full=HTH-type transcriptional regulator yidL {ECO:0000313|EMBL:EFE61072.2};
InterProD6I2U4 
PFAMD6I2U4 
ProdomD6I2U4 
UniProtKBI4R6Z6SubName: Full=Uncharacterized protein;
InterProI4R6Z6 
PFAMI4R6Z6 
ProdomI4R6Z6 
UniProtKBI4QLH5SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI4QLH5 
PFAMI4QLH5 
ProdomI4QLH5 
UniProtKBI4P8K8SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI4P8K8 
PFAMI4P8K8 
ProdomI4P8K8 
UniProtKBI4NIR6SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI4NIR6 
PFAMI4NIR6 
ProdomI4NIR6 
UniProtKBI2I5Y2SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI2I5Y2 
PFAMI2I5Y2 
ProdomI2I5Y2 
UniProtKBH0QES9SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProH0QES9 
PFAMH0QES9 
ProdomH0QES9 
UniProtKBG2F2M0SubName: Full=Putative DNA-binding transcriptional regulator;
InterProG2F2M0 
PFAMG2F2M0 
ProdomG2F2M0 
UniProtKBF9R2S0SubName: Full=Putative DNA-binding transcriptional regulator;
InterProF9R2S0 
PFAMF9R2S0 
ProdomF9R2S0 
UniProtKBF9CP87SubName: Full=Putative DNA-binding transcriptional regulator;
InterProF9CP87 
PFAMF9CP87 
ProdomF9CP87 
UniProtKBF8YMF9SubName: Full=Putative DNA-binding transcriptional regulator;
InterProF8YMF9 
PFAMF8YMF9 
ProdomF8YMF9 
UniProtKBF4VKZ9SubName: Full=Putative ARAC-type regulatory protein {ECO:0000313|EMBL:EGI44274.1};
InterProF4VKZ9 
PFAMF4VKZ9 
ProdomF4VKZ9 
UniProtKBF4TKV5SubName: Full=Putative ARAC-type regulatory protein {ECO:0000313|EMBL:EGI19431.1};
InterProF4TKV5 
PFAMF4TKV5 
ProdomF4TKV5 
UniProtKBF4SR83SubName: Full=Putative ARAC-type regulatory protein {ECO:0000313|EMBL:EGI08922.1};
InterProF4SR83 
PFAMF4SR83 
ProdomF4SR83 
UniProtKBF4NQ00SubName: Full=Transcriptional regulator, AraC family {ECO:0000313|EMBL:EGJ08231.1};
InterProF4NQ00 
PFAMF4NQ00 
ProdomF4NQ00 
UniProtKBK4WDH2SubName: Full=Putative DNA-binding transcriptional regulator;
InterProK4WDH2 
PFAMK4WDH2 
ProdomK4WDH2 
UniProtKBA0A0E0XTM8SubName: Full=Putative DNA-binding transcriptional regulator {ECO:0000313|EMBL:AFS71959.1};
InterProA0A0E0XTM8 
PFAMA0A0E0XTM8 
ProdomA0A0E0XTM8 
UniProtKBM2NY06SubName: Full=DNA-binding transcriptional regulator;
InterProM2NY06 
PFAMM2NY06 
ProdomM2NY06 
UniProtKBN6WA68SubName: Full=Putative DNA-binding transcriptional regulator;
InterProN6WA68 
PFAMN6WA68 
ProdomN6WA68 
UniProtKBH4FJH2SubName: Full=Putative DNA-binding transcriptional regulator;
InterProH4FJH2 
PFAMH4FJH2 
ProdomH4FJH2 
UniProtKBM5HMC0SubName: Full=DNA-binding transcriptional regulator;
InterProM5HMC0 
PFAMM5HMC0 
ProdomM5HMC0 
UniProtKBM5HMB4SubName: Full=DNA-binding transcriptional regulator;
InterProM5HMB4 
PFAMM5HMB4 
ProdomM5HMB4 
UniProtKBM2N7R3SubName: Full=DNA-binding transcriptional regulator;
InterProM2N7R3 
PFAMM2N7R3 
ProdomM2N7R3 
UniProtKBM4JS10SubName: Full=Putative DNA-binding transcriptional regulator;
InterProM4JS10 
PFAMM4JS10 
ProdomM4JS10 
UniProtKBC4ZYW0SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC4ZYW0 
PFAMC4ZYW0 
ProdomC4ZYW0 
UniProtKBF9CP87SubName: Full=Putative DNA-binding transcriptional regulator;
InterProF9CP87 
PFAMF9CP87 
ProdomF9CP87 
UniProtKBF9R2S0SubName: Full=Putative DNA-binding transcriptional regulator;
InterProF9R2S0 
PFAMF9R2S0 
ProdomF9R2S0 
UniProtKBF8YMF9SubName: Full=Putative DNA-binding transcriptional regulator;
InterProF8YMF9 
PFAMF8YMF9 
ProdomF8YMF9 
UniProtKBC6VCX9SubName: Full=Predicted DNA-binding transcriptional regulator;SubName: Full=Putative ARAC-type regulatory protein;
InterProC6VCX9 
PFAMC6VCX9 
ProdomC6VCX9 
UniProtKBF4VKZ9SubName: Full=Putative ARAC-type regulatory protein;
InterProF4VKZ9 
PFAMF4VKZ9 
ProdomF4VKZ9 
UniProtKBA0A979GII0SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:BAG79490.1}
InterProA0A979GII0 
PFAMA0A979GII0 
ProdomA0A979GII0 
UniProtKBF4TKV5SubName: Full=Putative ARAC-type regulatory protein;
InterProF4TKV5 
PFAMF4TKV5 
ProdomF4TKV5 
UniProtKBQ2M7Z3Predicted DNA-binding transcriptional regulator
InterProQ2M7Z3 
PFAMQ2M7Z3 
ProdomQ2M7Z3 
UniProtKBD6I2U4SubName: Full=HTH-type transcriptional regulator yidL;
InterProD6I2U4 
PFAMD6I2U4 
ProdomD6I2U4 
UniProtKBF4SR83SubName: Full=Putative ARAC-type regulatory protein;
InterProF4SR83 
PFAMF4SR83 
ProdomF4SR83 
UniProtKBB7M4G9SubName: Full=Putative DNA-binding transcriptional regulator;
InterProB7M4G9 
PFAMB7M4G9 
ProdomB7M4G9 
UniProtKBB7L821SubName: Full=Putative DNA-binding transcriptional regulator;
InterProB7L821 
PFAMB7L821 
ProdomB7L821 
UniProtKBF4NQ00SubName: Full=Putative uncharacterized protein;
InterProF4NQ00 
PFAMF4NQ00 
ProdomF4NQ00 
UniProtKBI4RWS3SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI4RWS3 
PFAMI4RWS3 
ProdomI4RWS3 
UniProtKBI4R6Z6SubName: Full=Uncharacterized protein;
InterProI4R6Z6 
PFAMI4R6Z6 
ProdomI4R6Z6 
UniProtKBI4QLH5SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI4QLH5 
PFAMI4QLH5 
ProdomI4QLH5 
UniProtKBA0A1X3JAG1SubName: Full=Putative ARAC-type regulatory protein {ECO:0000313|EMBL:OSL02213.1}
InterProA0A1X3JAG1 
PFAMA0A1X3JAG1 
ProdomA0A1X3JAG1 
UniProtKBA0A1X3KWR1SubName: Full=Putative ARAC-type regulatory protein {ECO:0000313|EMBL:OSL58620.1}
InterProA0A1X3KWR1 
PFAMA0A1X3KWR1 
ProdomA0A1X3KWR1 
UniProtKBC5WAS4SubName: Full=Predicted DNA-binding transcriptional regulator;SubName: Full=Putative ARAC-type regulatory protein;
InterProC5WAS4 
PFAMC5WAS4 
ProdomC5WAS4 
UniProtKBI4P8K8SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI4P8K8 
PFAMI4P8K8 
ProdomI4P8K8 
UniProtKBI4NIR6SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI4NIR6 
PFAMI4NIR6 
ProdomI4NIR6 
UniProtKBI2I5Y2SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI2I5Y2 
PFAMI2I5Y2 
ProdomI2I5Y2 
UniProtKBH4FJH2SubName: Full=Putative DNA-binding transcriptional regulator;
InterProH4FJH2 
PFAMH4FJH2 
ProdomH4FJH2 
UniProtKBH0QES9SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProH0QES9 
PFAMH0QES9 
ProdomH0QES9 
UniProtKBB1X9B3SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProB1X9B3 
PFAMB1X9B3 
ProdomB1X9B3 
UniProtKBB6I3R3SubName: Full=Putative transcriptional regulator;
InterProB6I3R3 
PFAMB6I3R3 
ProdomB6I3R3 
UniProtKBG2F2M0SubName: Full=Putative DNA-binding transcriptional regulator;
InterProG2F2M0 
PFAMG2F2M0 
ProdomG2F2M0 
UniProtKBP31449.1YIDL_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator yidL
InterProP31449.1 
PFAMP31449.1 
ProdomP31449.1 
UniProtKBP31449RecName: Full=Uncharacterized HTH-type transcriptional regulator yidL;
InterProP31449 
PFAMP31449 
ProdomP31449 
UniProtKBQ2M7Z3RecName: Full=Uncharacterized HTH-type transcriptional regulator yidL;
InterProQ2M7Z3 
PFAMQ2M7Z3 
ProdomQ2M7Z3 
RefSeqAP_004112.1 predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110]
RefSeqNP_418136.1 predicted DNA-binding transcriptional regulator [Escherichia coli K12]
RefSeqYP_002389161.1 putative DNA-binding transcriptional regulator [Escherichia coli IAI1]
RefSeqYP_002405071.1 putative DNA-binding transcriptional regulator [Escherichia coli 55989]
RefSeqYP_001732507.1 DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B]
RefSeqZP_06664418.1 HTH-type transcriptional regulator yidL [Escherichia coli B088]
RefSeqYP_003001251.1 hypothetical protein B21_03507 [Escherichia coli BL21]
RefSeqYP_002928569.1 putative DNA-binding transcriptional regulator [Escherichia coli BW2952]
RefSeqYP_002295241.1 putative transcriptional regulator [Escherichia coli SE11]
RefSeqYP_003056131.1 predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)]
GenPept209921157 putative transcriptional regulator [Escherichia coli SE11]
GenPept412971648putative ARAC-type regulatory protein
GenPept443424265putative DNA-binding transcriptional regulator
GenPept170083187 DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B]
GenPept169891022predicted DNA-binding transcriptional regulator
GenPept412965065putative ARAC-type regulatory protein
GenPept242379220putative ARAC-type regulatory protein
GenPept407051908putative DNA-binding transcriptional regulator
GenPept251786947 hypothetical protein B21_03507 [Escherichia coli BL21]
GenPept238902773 putative DNA-binding transcriptional regulator [Escherichia coli BW2952]
GenPept238862323predicted DNA-binding transcriptional regulator
GenPept331047353putative ARAC-type regulatory protein
GenPept331072949putative ARAC-type regulatory protein
GenPept332104885transcriptional regulator, AraC family
GenPept359333825predicted DNA-binding transcriptional regulator
GenPept401603YIDL_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator yidL
GenPept253979690predicted DNA-binding transcriptional regulator
GenPept218354136putative DNA-binding transcriptional regulator