University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P0AB10
Original Database ID tr C6VAA2
Organism Escherichia coli, Shigella flexneri, etc.
Annotation hypothetical protein ymba
Sequence Length 182

Dataset Information:

The newest dataset for this sequence was created on 2010-11-11. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region18-181
Protein Length182
Template PDB Code2iqiA
Template Region32-202
Sequence Identity12%
E-Value0
GA3410.98
MPQS1.0355
z-DOPE-1.27
Datasetecolb
ModPipe VersionSVN.r1278
Model Date2010-02-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2iqicrystal structure of hypothetical protein xcc0632 from xanthomonas campestris pv. campestris
DBALI2iqiA 
CATH3.40.50.10610 Domain: 2iqiA00 XCC0632-like (96%)
JenaImageLibrary2iqi 
Target Sequence
UniProtKBF5QW70SubName: Full=Putative uncharacterized protein;
InterProF5QW70 
PFAMF5QW70 
ProdomF5QW70 
UniProtKBJ7QPE0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CCJ43495.1};
InterProJ7QPE0 
PFAMJ7QPE0 
ProdomJ7QPE0 
UniProtKBJ7RS11SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CCK46204.1};
InterProJ7RS11 
PFAMJ7RS11 
ProdomJ7RS11 
UniProtKBM8KWJ8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMU71210.1};
InterProM8KWJ8 
PFAMM8KWJ8 
ProdomM8KWJ8 
UniProtKBM8U3T7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMV63535.1};
InterProM8U3T7 
PFAMM8U3T7 
ProdomM8U3T7 
UniProtKBM8UA26SubName: Full=Uncharacterized protein;
InterProM8UA26 
PFAMM8UA26 
ProdomM8UA26 
UniProtKBM8Y055SubName: Full=Uncharacterized protein;
InterProM8Y055 
PFAMM8Y055 
ProdomM8Y055 
UniProtKBM8YWS6SubName: Full=Uncharacterized protein;
InterProM8YWS6 
PFAMM8YWS6 
ProdomM8YWS6 
UniProtKBM9D924SubName: Full=Uncharacterized protein;
InterProM9D924 
PFAMM9D924 
ProdomM9D924 
UniProtKBI6H721SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIQ76563.1};
InterProI6H721 
PFAMI6H721 
ProdomI6H721 
UniProtKBI6GDN6SubName: Full=Uncharacterized protein;
InterProI6GDN6 
PFAMI6GDN6 
ProdomI6GDN6 
UniProtKBI0ZQ09SubName: Full=Uncharacterized protein;
InterProI0ZQ09 
PFAMI0ZQ09 
ProdomI0ZQ09 
UniProtKBG2CHP6SubName: Full=Putative uncharacterized protein;
InterProG2CHP6 
PFAMG2CHP6 
ProdomG2CHP6 
UniProtKBG2CWE2SubName: Full=Putative uncharacterized protein;
InterProG2CWE2 
PFAMG2CWE2 
ProdomG2CWE2 
UniProtKBH0Q9K9SubName: Full=Conserved protein;
InterProH0Q9K9 
PFAMH0Q9K9 
ProdomH0Q9K9 
UniProtKBH4VDW5SubName: Full=Uncharacterized protein;
InterProH4VDW5 
PFAMH4VDW5 
ProdomH4VDW5 
UniProtKBH4W8B2SubName: Full=Uncharacterized protein;
InterProH4W8B2 
PFAMH4W8B2 
ProdomH4W8B2 
UniProtKBH4XIA9SubName: Full=Uncharacterized protein;
InterProH4XIA9 
PFAMH4XIA9 
ProdomH4XIA9 
UniProtKBH5NMX0SubName: Full=Uncharacterized protein;
InterProH5NMX0 
PFAMH5NMX0 
ProdomH5NMX0 
UniProtKBH5P2B8SubName: Full=Uncharacterized protein;
InterProH5P2B8 
PFAMH5P2B8 
ProdomH5P2B8 
UniProtKBM9ETJ8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMX06614.1};
InterProM9ETJ8 
PFAMM9ETJ8 
ProdomM9ETJ8 
UniProtKBM9F719SubName: Full=Uncharacterized protein;
InterProM9F719 
PFAMM9F719 
ProdomM9F719 
UniProtKBN3YNJ8SubName: Full=Uncharacterized protein;
InterProN3YNJ8 
PFAMN3YNJ8 
ProdomN3YNJ8 
UniProtKBN4ES28SubName: Full=Uncharacterized protein;
InterProN4ES28 
PFAMN4ES28 
ProdomN4ES28 
UniProtKBN4G724SubName: Full=Uncharacterized protein;
InterProN4G724 
PFAMN4G724 
ProdomN4G724 
UniProtKBN4HYI9SubName: Full=Uncharacterized protein;
InterProN4HYI9 
PFAMN4HYI9 
ProdomN4HYI9 
UniProtKBN4MLP2SubName: Full=Uncharacterized protein;
InterProN4MLP2 
PFAMN4MLP2 
ProdomN4MLP2 
UniProtKBN4NBX5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ENG99242.1};
InterProN4NBX5 
PFAMN4NBX5 
ProdomN4NBX5 
UniProtKBN4P4L7SubName: Full=Uncharacterized protein;
InterProN4P4L7 
PFAMN4P4L7 
ProdomN4P4L7 
UniProtKBN4P4W4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ENH04070.1};
InterProN4P4W4 
PFAMN4P4W4 
ProdomN4P4W4 
UniProtKBN3VZG0SubName: Full=Uncharacterized protein;
InterProN3VZG0 
PFAMN3VZG0 
ProdomN3VZG0 
UniProtKBN3VFF1SubName: Full=Uncharacterized protein;
InterProN3VFF1 
PFAMN3VFF1 
ProdomN3VFF1 
UniProtKBN2TBS6SubName: Full=Uncharacterized protein;
InterProN2TBS6 
PFAMN2TBS6 
ProdomN2TBS6 
UniProtKBM9IY88SubName: Full=Uncharacterized protein;
InterProM9IY88 
PFAMM9IY88 
ProdomM9IY88 
UniProtKBM9KHN8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMX88934.1};
InterProM9KHN8 
PFAMM9KHN8 
ProdomM9KHN8 
UniProtKBN2HIJ8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ENA09243.1};
InterProN2HIJ8 
PFAMN2HIJ8 
ProdomN2HIJ8 
UniProtKBN2JX77SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ENA40816.1};
InterProN2JX77 
PFAMN2JX77 
ProdomN2JX77 
UniProtKBN2NGB3SubName: Full=Uncharacterized protein;
InterProN2NGB3 
PFAMN2NGB3 
ProdomN2NGB3 
UniProtKBN2QVD1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ENB14824.1};
InterProN2QVD1 
PFAMN2QVD1 
ProdomN2QVD1 
UniProtKBN2RJR7SubName: Full=Uncharacterized protein;
InterProN2RJR7 
PFAMN2RJR7 
ProdomN2RJR7 
UniProtKBN2SZM9SubName: Full=Uncharacterized protein;
InterProN2SZM9 
PFAMN2SZM9 
ProdomN2SZM9 
UniProtKBN4PAT9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ENH10284.1};
InterProN4PAT9 
PFAMN4PAT9 
ProdomN4PAT9 
UniProtKBF5PNP9SubName: Full=Putative uncharacterized protein;
InterProF5PNP9 
PFAMF5PNP9 
ProdomF5PNP9 
UniProtKBI0VP75SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EID65941.1};
InterProI0VP75 
PFAMI0VP75 
ProdomI0VP75 
UniProtKBA0A080EVS2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN50776.1};
InterProA0A080EVS2 
PFAMA0A080EVS2 
ProdomA0A080EVS2 
UniProtKBA0A074HZB6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO00577.1};
InterProA0A074HZB6 
PFAMA0A074HZB6 
ProdomA0A074HZB6 
UniProtKBA0A073GVR5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEJ69903.1};
InterProA0A073GVR5 
PFAMA0A073GVR5 
ProdomA0A073GVR5 
UniProtKBC5W2Z6SubName: Full=Conserved protein;SubName: Full=Putative uncharacterized protein ymbA;
InterProC5W2Z6 
PFAMC5W2Z6 
ProdomC5W2Z6 
UniProtKBA0A071CCV4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ16746.1};
InterProA0A071CCV4 
PFAMA0A071CCV4 
ProdomA0A071CCV4 
UniProtKBA0A071BXZ2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY87101.1};
InterProA0A071BXZ2 
PFAMA0A071BXZ2 
ProdomA0A071BXZ2 
UniProtKBA0A070SRR2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX20682.1};
InterProA0A070SRR2 
PFAMA0A070SRR2 
ProdomA0A070SRR2 
UniProtKBC6UET7SubName: Full=Putative uncharacterized protein ymbA;
InterProC6UET7 
PFAMC6UET7 
ProdomC6UET7 
UniProtKBA0A069Z720SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU55410.1};
InterProA0A069Z720 
PFAMA0A069Z720 
ProdomA0A069Z720 
UniProtKBA0A071D903SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ37929.1};
InterProA0A071D903 
PFAMA0A071D903 
ProdomA0A071D903 
UniProtKBN3B1K6SubName: Full=Uncharacterized protein;
InterProN3B1K6 
PFAMN3B1K6 
ProdomN3B1K6 
UniProtKBA0A069XSQ3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU32282.1};
InterProA0A069XSQ3 
PFAMA0A069XSQ3 
ProdomA0A069XSQ3 
UniProtKBA0A029KYF0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZJ78333.1};
InterProA0A029KYF0 
PFAMA0A029KYF0 
ProdomA0A029KYF0 
UniProtKBA0A029N0B1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZK02978.1};
InterProA0A029N0B1 
PFAMA0A029N0B1 
ProdomA0A029N0B1 
UniProtKBC6VAA2SubName: Full=Conserved protein;SubName: Full=Putative uncharacterized protein ymbA;
InterProC6VAA2 
PFAMC6VAA2 
ProdomC6VAA2 
UniProtKBA0A073TGS5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEL27590.1};
InterProA0A073TGS5 
PFAMA0A073TGS5 
ProdomA0A073TGS5 
UniProtKBI6GDN6SubName: Full=Uncharacterized protein;
InterProI6GDN6 
PFAMI6GDN6 
ProdomI6GDN6 
UniProtKBA0A6C8HK84ABC_trans_aux domain-containing protein {ECO:0000259|Pfam:PF03886}
InterProA0A6C8HK84 
PFAMA0A6C8HK84 
ProdomA0A6C8HK84 
UniProtKBA0A829DXV5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ENB14824.1}
InterProA0A829DXV5 
PFAMA0A829DXV5 
ProdomA0A829DXV5 
UniProtKBI6H721SubName: Full=Uncharacterized protein;
InterProI6H721 
PFAMI6H721 
ProdomI6H721 
UniProtKBF5QW70SubName: Full=Putative uncharacterized protein;
InterProF5QW70 
PFAMF5QW70 
ProdomF5QW70 
UniProtKBH4VDW5SubName: Full=Uncharacterized protein;
InterProH4VDW5 
PFAMH4VDW5 
ProdomH4VDW5 
UniProtKBG2CWE2SubName: Full=Putative uncharacterized protein;
InterProG2CWE2 
PFAMG2CWE2 
ProdomG2CWE2 
UniProtKBH0Q9K9SubName: Full=Conserved protein;
InterProH0Q9K9 
PFAMH0Q9K9 
ProdomH0Q9K9 
UniProtKBH4W8B2SubName: Full=Uncharacterized protein;
InterProH4W8B2 
PFAMH4W8B2 
ProdomH4W8B2 
UniProtKBC6UET7SubName: Full=Putative uncharacterized protein ymbA;
InterProC6UET7 
PFAMC6UET7 
ProdomC6UET7 
UniProtKBH4XIA9SubName: Full=Uncharacterized protein;
InterProH4XIA9 
PFAMH4XIA9 
ProdomH4XIA9 
UniProtKBF5PNP9SubName: Full=Putative uncharacterized protein;
InterProF5PNP9 
PFAMF5PNP9 
ProdomF5PNP9 
UniProtKBH5NMX0SubName: Full=Uncharacterized protein;
InterProH5NMX0 
PFAMH5NMX0 
ProdomH5NMX0 
UniProtKBC5W2Z6SubName: Full=Conserved protein;SubName: Full=Putative uncharacterized protein ymbA;
InterProC5W2Z6 
PFAMC5W2Z6 
ProdomC5W2Z6 
UniProtKBI0ZQ09SubName: Full=Uncharacterized protein;
InterProI0ZQ09 
PFAMI0ZQ09 
ProdomI0ZQ09 
UniProtKBG2CHP6SubName: Full=Putative uncharacterized protein;
InterProG2CHP6 
PFAMG2CHP6 
ProdomG2CHP6 
UniProtKBC6VAA2SubName: Full=Conserved protein;SubName: Full=Putative uncharacterized protein ymbA;
InterProC6VAA2 
PFAMC6VAA2 
ProdomC6VAA2 
UniProtKBI0VP75SubName: Full=Uncharacterized protein;
InterProI0VP75 
PFAMI0VP75 
ProdomI0VP75 
UniProtKBH5P2B8SubName: Full=Uncharacterized protein;
InterProH5P2B8 
PFAMH5P2B8 
ProdomH5P2B8 
UniProtKBP0AB10Hypothetical protein ymbA
InterProP0AB10 
PFAMP0AB10 
ProdomP0AB10 
UniProtKBP75866Hypothetical protein ymbA
InterProP75866 
PFAMP75866 
ProdomP75866 
UniProtKBP0AB11Hypothetical protein ymbA
InterProP0AB11 
PFAMP0AB11 
ProdomP0AB11 
RefSeqYP_003044174.1 hypothetical protein ECB_00956 [Escherichia coli B str. REL606]
RefSeqYP_003053622.1 hypothetical protein ECD_00956 [Escherichia coli BL21(DE3)]
RefSeqYP_002998798.1 hypothetical protein B21_00963 [Escherichia coli BL21]
RefSeqAP_001582.1 hypothetical protein [Escherichia coli str. K-12 substr. W3110]
GenPept242376767conserved protein
GenPept251784494 hypothetical protein B21_00963 [Escherichia coli BL21]
GenPept253972967hypothetical protein ECB_00956
GenPept253977181hypothetical protein ECD_00956
GenPept254287874 hypothetical protein ECD_00956 [Escherichia coli BL21(DE3)]
GenPept3025222YMBA_ECOLI HYPOTHETICAL 20.0 KDA PROTEIN IN PQIB-RMF INTERGENIC REGION
GenPept359331643conserved protein
GenPept412962290hypothetical protein BN16_15171
GenPept412968869hypothetical protein BN17_08131
GenPept687676125conserved protein
GenPept7467191G64835 ymbA protein - Escherichia coli
GenPept85674798conserved hypothetical protein
GenPept89107802 hypothetical protein [Escherichia coli str. K-12 substr. W3110]
GenPept687671861conserved protein