University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A017JNS8
Original Database ID ref NP_417639.6
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation recname: full=ribosome maturation
factor rimp {eco:0000256|hamap-rule:mf_01077,
eco:0000256|saas:saas00001667};
Sequence Length 150

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region1-149
Protein Length150
Template PDB Code1ib8A
Template Region7-161
Sequence Identity32%
E-Value0
GA3411
MPQS1.34373
z-DOPE0.13
TSVMod MethodMTALL
TSVMod RMSD1.85
TSVMod NO350.567
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1ib8solution structure and function of a conserved protein sp14.3 encoded by an essential streptococcus pneumoniae gene ; PFAM: PF02576 ; SCOP: 71168 71169
DBALI1ib8A 
CATH3.30.300.70 Domain: 1ib8A01 GMP Synthetase; Chain A, domain 3 (98%)
CATH2.30.30.180 Domain: 1ib8A02 SH3 type barrels. (100%)
JenaImageLibrary1ib8 
Target Sequence
UniProtKBG5T2W8RecName: Full=Ribosome maturation factor RimP;
InterProG5T2W8 
PFAMG5T2W8 
ProdomG5T2W8 
UniProtKBA0A028BVL5RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A028BVL5 
PFAMA0A028BVL5 
ProdomA0A028BVL5 
UniProtKBA0A028ECK1RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A028ECK1 
PFAMA0A028ECK1 
ProdomA0A028ECK1 
UniProtKBA0A070FDD4RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A070FDD4 
PFAMA0A070FDD4 
ProdomA0A070FDD4 
UniProtKBA0A070T2J9RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A070T2J9 
PFAMA0A070T2J9 
ProdomA0A070T2J9 
UniProtKBA0A0A5NP72SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDX08605.1};
InterProA0A0A5NP72 
PFAMA0A0A5NP72 
ProdomA0A0A5NP72 
UniProtKBA0A0A8UKB1RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0A8UKB1 
PFAMA0A0A8UKB1 
ProdomA0A0A8UKB1 
UniProtKBA0A0E1M1T1RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0E1M1T1 
PFAMA0A0E1M1T1 
ProdomA0A0E1M1T1 
UniProtKBA0A0E1SYR6RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0E1SYR6 
PFAMA0A0E1SYR6 
ProdomA0A0E1SYR6 
UniProtKBA0A0E2L2S6RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0E2L2S6 
PFAMA0A0E2L2S6 
ProdomA0A0E2L2S6 
UniProtKBA0A0E2U7R7RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0E2U7R7 
PFAMA0A0E2U7R7 
ProdomA0A0E2U7R7 
UniProtKBA0A027YRA2RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A027YRA2 
PFAMA0A027YRA2 
ProdomA0A027YRA2 
UniProtKBA0A027U1G7RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A027U1G7 
PFAMA0A027U1G7 
ProdomA0A027U1G7 
UniProtKBA7ZS68RecName: Full=Ribosome maturation factor RimP;
InterProA7ZS68 
PFAMA7ZS68 
ProdomA7ZS68 
UniProtKBG2BUI8RecName: Full=Ribosome maturation factor RimP;
InterProG2BUI8 
PFAMG2BUI8 
ProdomG2BUI8 
UniProtKBG5VUE8RecName: Full=Ribosome maturation factor RimP;
InterProG5VUE8 
PFAMG5VUE8 
ProdomG5VUE8 
UniProtKBG5WB06RecName: Full=Ribosome maturation factor RimP;
InterProG5WB06 
PFAMG5WB06 
ProdomG5WB06 
UniProtKBG5WJ72RecName: Full=Ribosome maturation factor RimP;
InterProG5WJ72 
PFAMG5WJ72 
ProdomG5WJ72 
UniProtKBG5UWU9RecName: Full=Ribosome maturation factor RimP;
InterProG5UWU9 
PFAMG5UWU9 
ProdomG5UWU9 
UniProtKBG7RJX4RecName: Full=Ribosome maturation factor RimP;
InterProG7RJX4 
PFAMG7RJX4 
ProdomG7RJX4 
UniProtKBG5Y7N4RecName: Full=Ribosome maturation factor RimP;
InterProG5Y7N4 
PFAMG5Y7N4 
ProdomG5Y7N4 
UniProtKBH0QE54RecName: Full=Ribosome maturation factor RimP;
InterProH0QE54 
PFAMH0QE54 
ProdomH0QE54 
UniProtKBG5Y1Z9RecName: Full=Ribosome maturation factor RimP;
InterProG5Y1Z9 
PFAMG5Y1Z9 
ProdomG5Y1Z9 
UniProtKBE7K598RecName: Full=Ribosome maturation factor RimP;
InterProE7K598 
PFAME7K598 
ProdomE7K598 
UniProtKBA0A0F6C9E2RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0F6C9E2 
PFAMA0A0F6C9E2 
ProdomA0A0F6C9E2 
UniProtKBA0A0F6EHY6RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0F6EHY6 
PFAMA0A0F6EHY6 
ProdomA0A0F6EHY6 
UniProtKBE6NXV0RecName: Full=Ribosome maturation factor RimP;
InterProE6NXV0 
PFAME6NXV0 
ProdomE6NXV0 
UniProtKBE1PF17RecName: Full=Ribosome maturation factor RimP;
InterProE1PF17 
PFAME1PF17 
ProdomE1PF17 
UniProtKBB7NDF6RecName: Full=Ribosome maturation factor RimP;
InterProB7NDF6 
PFAMB7NDF6 
ProdomB7NDF6 
UniProtKBA8A4Y6RecName: Full=Ribosome maturation factor RimP;
InterProA8A4Y6 
PFAMA8A4Y6 
ProdomA8A4Y6 
UniProtKBF5P072RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProF5P072 
PFAMF5P072 
ProdomF5P072 
UniProtKBF1ZE16RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProF1ZE16 
PFAMF1ZE16 
ProdomF1ZE16 
UniProtKBG1ZP96RecName: Full=Ribosome maturation factor RimP;
InterProG1ZP96 
PFAMG1ZP96 
ProdomG1ZP96 
UniProtKBF9R249RecName: Full=Ribosome maturation factor RimP;
InterProF9R249 
PFAMF9R249 
ProdomF9R249 
UniProtKBG2BE69RecName: Full=Ribosome maturation factor RimP;
InterProG2BE69 
PFAMG2BE69 
ProdomG2BE69 
UniProtKBG2F4W1RecName: Full=Ribosome maturation factor RimP;
InterProG2F4W1 
PFAMG2F4W1 
ProdomG2F4W1 
UniProtKBE3PK82RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProE3PK82 
PFAME3PK82 
ProdomE3PK82 
UniProtKBE3XTD5RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProE3XTD5 
PFAME3XTD5 
ProdomE3XTD5 
UniProtKBB7NKN9RecName: Full=Ribosome maturation factor RimP;
InterProB7NKN9 
PFAMB7NKN9 
ProdomB7NKN9 
UniProtKBA0A0F6MH43RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0F6MH43 
PFAMA0A0F6MH43 
ProdomA0A0F6MH43 
UniProtKBA0A0G2SCS9RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077};
InterProA0A0G2SCS9 
PFAMA0A0G2SCS9 
ProdomA0A0G2SCS9 
UniProtKBA0A0I2UKU8SubName: Full=Ribosome maturation protein RimP {ECO:0000313|EMBL:CSV08994.1};
InterProA0A0I2UKU8 
PFAMA0A0I2UKU8 
ProdomA0A0I2UKU8 
UniProtKBA0A0J3VRH1SubName: Full=Ribosome maturation factor RimP {ECO:0000313|EMBL:KME67733.1};
InterProA0A0J3VRH1 
PFAMA0A0J3VRH1 
ProdomA0A0J3VRH1 
UniProtKBB7LHN5RecName: Full=Ribosome maturation factor RimP;
InterProB7LHN5 
PFAMB7LHN5 
ProdomB7LHN5 
UniProtKBB7MB91RecName: Full=Ribosome maturation factor RimP;
InterProB7MB91 
PFAMB7MB91 
ProdomB7MB91 
UniProtKBB2U205RecName: Full=Ribosome maturation factor RimP;
InterProB2U205 
PFAMB2U205 
ProdomB2U205 
UniProtKBB2NAQ7RecName: Full=Ribosome maturation factor RimP;
InterProB2NAQ7 
PFAMB2NAQ7 
ProdomB2NAQ7 
UniProtKBC6UUJ2RecName: Full=Ribosome maturation factor RimP;
InterProC6UUJ2 
PFAMC6UUJ2 
ProdomC6UUJ2 
UniProtKBC5W9B9RecName: Full=Ribosome maturation factor RimP;
InterProC5W9B9 
PFAMC5W9B9 
ProdomC5W9B9 
UniProtKBG4PR55RecName: Full=Ribosome maturation factor RimP;
InterProG4PR55 
PFAMG4PR55 
ProdomG4PR55 
UniProtKBG2C9P9RecName: Full=Ribosome maturation factor RimP;
InterProG2C9P9 
PFAMG2C9P9 
ProdomG2C9P9 
UniProtKBA0A017JNS8RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A017JNS8 
PFAMA0A017JNS8 
ProdomA0A017JNS8 
UniProtKBH1BXI1RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProH1BXI1 
PFAMH1BXI1 
ProdomH1BXI1 
UniProtKBA0A026RTG9RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A026RTG9 
PFAMA0A026RTG9 
ProdomA0A026RTG9 
UniProtKBA0A064TF02RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A064TF02 
PFAMA0A064TF02 
ProdomA0A064TF02 
UniProtKBA0A0E0VBE0RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0E0VBE0 
PFAMA0A0E0VBE0 
ProdomA0A0E0VBE0 
UniProtKBA0A0E2UA41RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0E2UA41 
PFAMA0A0E2UA41 
ProdomA0A0E2UA41 
UniProtKBA0A0G3KQW5RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077};
InterProA0A0G3KQW5 
PFAMA0A0G3KQW5 
ProdomA0A0G3KQW5 
UniProtKBB7N0V5RecName: Full=Ribosome maturation factor RimP;
InterProB7N0V5 
PFAMB7N0V5 
ProdomB7N0V5 
UniProtKBE0J2S2RecName: Full=Ribosome maturation factor RimP;
InterProE0J2S2 
PFAME0J2S2 
ProdomE0J2S2 
UniProtKBE7JL43RecName: Full=Ribosome maturation factor RimP;
InterProE7JL43 
PFAME7JL43 
ProdomE7JL43 
UniProtKBF8YL47RecName: Full=Ribosome maturation factor RimP;
InterProF8YL47 
PFAMF8YL47 
ProdomF8YL47 
UniProtKBG5WY57RecName: Full=Ribosome maturation factor RimP;
InterProG5WY57 
PFAMG5WY57 
ProdomG5WY57 
UniProtKBG5TML7RecName: Full=Ribosome maturation factor RimP;
InterProG5TML7 
PFAMG5TML7 
ProdomG5TML7 
UniProtKBF7RDZ2RecName: Full=Ribosome maturation factor RimP;
InterProF7RDZ2 
PFAMF7RDZ2 
ProdomF7RDZ2 
UniProtKBA0A025CMA6RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A025CMA6 
PFAMA0A025CMA6 
ProdomA0A025CMA6 
UniProtKBF5PW80RecName: Full=Ribosome maturation factor RimP;
InterProF5PW80 
PFAMF5PW80 
ProdomF5PW80 
UniProtKBA0A025GF67RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A025GF67 
PFAMA0A025GF67 
ProdomA0A025GF67 
UniProtKBA0A0G3I1S9RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077};
InterProA0A0G3I1S9 
PFAMA0A0G3I1S9 
ProdomA0A0G3I1S9 
UniProtKBF3WN91RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProF3WN91 
PFAMF3WN91 
ProdomF3WN91 
UniProtKBG5VEP5RecName: Full=Ribosome maturation factor RimP;
InterProG5VEP5 
PFAMG5VEP5 
ProdomG5VEP5 
UniProtKBA0A026H790RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A026H790 
PFAMA0A026H790 
ProdomA0A026H790 
UniProtKBA0A0C7MLW9RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0C7MLW9 
PFAMA0A0C7MLW9 
ProdomA0A0C7MLW9 
UniProtKBA0A0G3KAE0RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077};
InterProA0A0G3KAE0 
PFAMA0A0G3KAE0 
ProdomA0A0G3KAE0 
UniProtKBD5D1I0RecName: Full=Ribosome maturation factor RimP;
InterProD5D1I0 
PFAMD5D1I0 
ProdomD5D1I0 
UniProtKBF9CNK6RecName: Full=Ribosome maturation factor RimP;
InterProF9CNK6 
PFAMF9CNK6 
ProdomF9CNK6 
UniProtKBG5U2X6RecName: Full=Ribosome maturation factor RimP;
InterProG5U2X6 
PFAMG5U2X6 
ProdomG5U2X6 
UniProtKBA0A0H3XDH4SubName: Full=Ribosome maturation factor for 30S subunits {ECO:0000313|EMBL:AKM36726.1};
InterProA0A0H3XDH4 
PFAMA0A0H3XDH4 
ProdomA0A0H3XDH4 
UniProtKBB7LR39RecName: Full=Ribosome maturation factor RimP;
InterProB7LR39 
PFAMB7LR39 
ProdomB7LR39 
UniProtKBB7M078RecName: Full=Ribosome maturation factor RimP;
InterProB7M078 
PFAMB7M078 
ProdomB7M078 
UniProtKBC6UF02RecName: Full=Ribosome maturation factor RimP;
InterProC6UF02 
PFAMC6UF02 
ProdomC6UF02 
UniProtKBC6V9X6RecName: Full=Ribosome maturation factor RimP;
InterProC6V9X6 
PFAMC6V9X6 
ProdomC6V9X6 
UniProtKBE3Y4K2RecName: Full=Ribosome maturation factor RimP;
InterProE3Y4K2 
PFAME3Y4K2 
ProdomE3Y4K2 
UniProtKBE6B566RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProE6B566 
PFAME6B566 
ProdomE6B566 
UniProtKBB1XGY2RecName: Full=Ribosome maturation factor RimP;
InterProB1XGY2 
PFAMB1XGY2 
ProdomB1XGY2 
UniProtKBF5QP70RecName: Full=Ribosome maturation factor RimP;
InterProF5QP70 
PFAMF5QP70 
ProdomF5QP70 
UniProtKBG2A4Q8RecName: Full=Ribosome maturation factor RimP;
InterProG2A4Q8 
PFAMG2A4Q8 
ProdomG2A4Q8 
UniProtKBA0A0F6FCN9RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0F6FCN9 
PFAMA0A0F6FCN9 
ProdomA0A0F6FCN9 
UniProtKBA0A0E3N3A9RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0E3N3A9 
PFAMA0A0E3N3A9 
ProdomA0A0E3N3A9 
UniProtKBA0A0E1ZSU6RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0E1ZSU6 
PFAMA0A0E1ZSU6 
ProdomA0A0E1ZSU6 
UniProtKBE7SV83RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProE7SV83 
PFAME7SV83 
ProdomE7SV83 
UniProtKBG5XHW5RecName: Full=Ribosome maturation factor RimP;
InterProG5XHW5 
PFAMG5XHW5 
ProdomG5XHW5 
UniProtKBG7RC49RecName: Full=Ribosome maturation factor RimP;
InterProG7RC49 
PFAMG7RC49 
ProdomG7RC49 
UniProtKBG5UDC8RecName: Full=Ribosome maturation factor RimP;
InterProG5UDC8 
PFAMG5UDC8 
ProdomG5UDC8 
UniProtKBA0A026V1R6RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A026V1R6 
PFAMA0A026V1R6 
ProdomA0A026V1R6 
UniProtKBA0A028AJ41RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A028AJ41 
PFAMA0A028AJ41 
ProdomA0A028AJ41 
UniProtKBA0A070DJB9RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A070DJB9 
PFAMA0A070DJB9 
ProdomA0A070DJB9 
UniProtKBA0A080IQF9RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A080IQF9 
PFAMA0A080IQF9 
ProdomA0A080IQF9 
UniProtKBA0A0E0XU39RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProA0A0E0XU39 
PFAMA0A0E0XU39 
ProdomA0A0E0XU39 
UniProtKBE7U8X5RecName: Full=Ribosome maturation factor RimP;
InterProE7U8X5 
PFAME7U8X5 
ProdomE7U8X5