University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A0G3J0E8
Original Database ID TR YHBC_ECOLI
Organism Escherichia coli, Shigella boydii, etc.
Annotation recname: full=ribosome maturation
factor rimp {eco:0000256|hamap-rule:mf_01077};
Sequence Length 152

Dataset Information:

The newest dataset for this sequence was created on 2004-10-12. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region2-152
Protein Length152
Template PDB Code1ib8A
Template Region6-162
Sequence Identity32%
E-Value4e-45
GA3411
DatasetSP/TR-2004
ModPipe VersionModPipe1.0
Model Date2004-10-12

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1ib8solution structure and function of a conserved protein sp14.3 encoded by an essential streptococcus pneumoniae gene ; PFAM: PF02576 ; SCOP: 71168 71169
DBALI1ib8A 
CATH3.30.300.70 Domain: 1ib8A01 GMP Synthetase; Chain A, domain 3 (99%)
CATH2.30.30.180 Domain: 1ib8A02 SH3 type barrels. (100%)
JenaImageLibrary1ib8 
Target Sequence
UniProtKBQ32BG3RecName: Full=Ribosome maturation factor RimP;
InterProQ32BG3 
PFAMQ32BG3 
ProdomQ32BG3 
UniProtKBE9VZ59RecName: Full=Ribosome maturation factor RimP;
InterProE9VZ59 
PFAME9VZ59 
ProdomE9VZ59 
UniProtKBE9VL27RecName: Full=Ribosome maturation factor RimP;
InterProE9VL27 
PFAME9VL27 
ProdomE9VL27 
UniProtKBP0A8B1RecName: Full=Ribosome maturation factor RimP;
InterProP0A8B1 
PFAMP0A8B1 
ProdomP0A8B1 
UniProtKBQ1R6G7RecName: Full=Ribosome maturation factor RimP;
InterProQ1R6G7 
PFAMQ1R6G7 
ProdomQ1R6G7 
UniProtKBC4ZSR1RecName: Full=Ribosome maturation factor RimP;
InterProC4ZSR1 
PFAMC4ZSR1 
ProdomC4ZSR1 
UniProtKBA0A0G3J0E8RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077};
InterProA0A0G3J0E8 
PFAMA0A0G3J0E8 
ProdomA0A0G3J0E8 
UniProtKBP0A8A9RecName: Full=Ribosome maturation factor RimP;
InterProP0A8A9 
PFAMP0A8A9 
ProdomP0A8A9 
UniProtKBD2A893RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProD2A893 
PFAMD2A893 
ProdomD2A893 
UniProtKBJ7RX84RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProJ7RX84 
PFAMJ7RX84 
ProdomJ7RX84 
UniProtKBE9WI67RecName: Full=Ribosome maturation factor RimP;
InterProE9WI67 
PFAME9WI67 
ProdomE9WI67 
UniProtKBE9WTE9RecName: Full=Ribosome maturation factor RimP;
InterProE9WTE9 
PFAME9WTE9 
ProdomE9WTE9 
UniProtKBC3SSN2RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProC3SSN2 
PFAMC3SSN2 
ProdomC3SSN2 
UniProtKBI1BAG0RecName: Full=Ribosome maturation factor RimP;
InterProI1BAG0 
PFAMI1BAG0 
ProdomI1BAG0 
UniProtKBA1AG75RecName: Full=Ribosome maturation factor RimP;
InterProA1AG75 
PFAMA1AG75 
ProdomA1AG75 
UniProtKBF4W063RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProF4W063 
PFAMF4W063 
ProdomF4W063 
UniProtKBQ3YX71RecName: Full=Ribosome maturation factor RimP;
InterProQ3YX71 
PFAMQ3YX71 
ProdomQ3YX71 
UniProtKBF4UDW6RecName: Full=Ribosome maturation factor RimP;
InterProF4UDW6 
PFAMF4UDW6 
ProdomF4UDW6 
UniProtKBB7UJ65RecName: Full=Ribosome maturation factor RimP;
InterProB7UJ65 
PFAMB7UJ65 
ProdomB7UJ65 
UniProtKBQ8X9M1RecName: Full=Ribosome maturation factor RimP;
InterProQ8X9M1 
PFAMQ8X9M1 
ProdomQ8X9M1 
UniProtKBC2DW81RecName: Full=Ribosome maturation factor RimP;
InterProC2DW81 
PFAMC2DW81 
ProdomC2DW81 
UniProtKBB6I1P5RecName: Full=Ribosome maturation factor RimP;
InterProB6I1P5 
PFAMB6I1P5 
ProdomB6I1P5 
UniProtKBI0ZV34RecName: Full=Ribosome maturation factor RimP;
InterProI0ZV34 
PFAMI0ZV34 
ProdomI0ZV34 
UniProtKBF4UTJ6RecName: Full=Ribosome maturation factor RimP;
InterProF4UTJ6 
PFAMF4UTJ6 
ProdomF4UTJ6 
UniProtKBE9YJ56RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProE9YJ56 
PFAME9YJ56 
ProdomE9YJ56 
UniProtKBB3HSC1RecName: Full=Ribosome maturation factor RimP;
InterProB3HSC1 
PFAMB3HSC1 
ProdomB3HSC1 
UniProtKBT2G240SubName: Full=Ribosome maturation protein RimP;
InterProT2G240 
PFAMT2G240 
ProdomT2G240 
UniProtKBP0A8B0RecName: Full=Ribosome maturation factor RimP;
InterProP0A8B0 
PFAMP0A8B0 
ProdomP0A8B0 
UniProtKBF9HYK0RecName: Full=Ribosome maturation factor RimP;
InterProF9HYK0 
PFAMF9HYK0 
ProdomF9HYK0 
UniProtKBE9Z2Q4RecName: Full=Ribosome maturation factor RimP;
InterProE9Z2Q4 
PFAME9Z2Q4 
ProdomE9Z2Q4 
UniProtKBB3X342RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProB3X342 
PFAMB3X342 
ProdomB3X342 
UniProtKBB5YS60RecName: Full=Ribosome maturation factor RimP;
InterProB5YS60 
PFAMB5YS60 
ProdomB5YS60 
UniProtKBE9XGB0RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProE9XGB0 
PFAME9XGB0 
ProdomE9XGB0 
UniProtKBF4TXS4RecName: Full=Ribosome maturation factor RimP;
InterProF4TXS4 
PFAMF4TXS4 
ProdomF4TXS4 
UniProtKBP03843RecName: Full=Ribosome maturation factor RimP;
InterProP03843 
PFAMP03843 
ProdomP03843 
UniProtKBE9X6I7RecName: Full=Ribosome maturation factor RimP;
InterProE9X6I7 
PFAME9X6I7 
ProdomE9X6I7 
UniProtKBD3QSP2RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProD3QSP2 
PFAMD3QSP2 
ProdomD3QSP2 
UniProtKBE9YUS3RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProE9YUS3 
PFAME9YUS3 
ProdomE9YUS3 
UniProtKBB1IQV1RecName: Full=Ribosome maturation factor RimP;
InterProB1IQV1 
PFAMB1IQV1 
ProdomB1IQV1 
UniProtKBE9VAB7RecName: Full=Ribosome maturation factor RimP;
InterProE9VAB7 
PFAME9VAB7 
ProdomE9VAB7 
UniProtKBF0JSP2RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667};
InterProF0JSP2 
PFAMF0JSP2 
ProdomF0JSP2 
UniProtKBA0A0G3JJF6RecName: Full=Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077};
InterProA0A0G3JJF6 
PFAMA0A0G3JJF6 
ProdomA0A0G3JJF6 
UniProtKBA0A0H8I635SubName: Full=Ribosome maturation protein RimP {ECO:0000313|EMBL:CSH25089.1};
InterProA0A0H8I635 
PFAMA0A0H8I635 
ProdomA0A0H8I635 
UniProtKBB1LFS2RecName: Full=Ribosome maturation factor RimP;
InterProB1LFS2 
PFAMB1LFS2 
ProdomB1LFS2 
UniProtKBE9Y2E2RecName: Full=Ribosome maturation factor RimP;
InterProE9Y2E2 
PFAME9Y2E2 
ProdomE9Y2E2 
UniProtKBA0A7U9BK44SubName: Full=Putative cytoplasmic protein {ECO:0000313|EMBL:EGI49640.1}
InterProA0A7U9BK44 
PFAMA0A7U9BK44 
ProdomA0A7U9BK44 
UniProtKBA0A7U9BA36SubName: Full=Putative cytoplasmic protein {ECO:0000313|EMBL:EGI34826.1}
InterProA0A7U9BA36 
PFAMA0A7U9BA36 
ProdomA0A7U9BA36 
UniProtKBA0A7U9B142SubName: Full=Putative cytoplasmic protein {ECO:0000313|EMBL:EGI30014.1}
InterProA0A7U9B142 
PFAMA0A7U9B142 
ProdomA0A7U9B142 
UniProtKBA0A2Y4WLI3Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077}
InterProA0A2Y4WLI3 
PFAMA0A2Y4WLI3 
ProdomA0A2Y4WLI3 
UniProtKBA0A1X3LT22Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077}
InterProA0A1X3LT22 
PFAMA0A1X3LT22 
ProdomA0A1X3LT22 
UniProtKBA1AG75Putative uncharacterized protein yhbC.
InterProA1AG75 
PFAMA1AG75 
ProdomA1AG75 
UniProtKBQ3YX71Hypothetical protein yhbC
InterProQ3YX71 
PFAMQ3YX71 
ProdomQ3YX71 
UniProtKBQ8X9M1Orf, hypothetical protein
InterProQ8X9M1 
PFAMQ8X9M1 
ProdomQ8X9M1 
UniProtKBC2DW81RecName: Full=Ribosome maturation factor RimP;
InterProC2DW81 
PFAMC2DW81 
ProdomC2DW81 
UniProtKBC4ZSR1SubName: Full=Conserved protein;
InterProC4ZSR1 
PFAMC4ZSR1 
ProdomC4ZSR1 
UniProtKBB3X342RecName: Full=Ribosome maturation factor RimP;
InterProB3X342 
PFAMB3X342 
ProdomB3X342 
UniProtKBD2A893RecName: Full=Ribosome maturation factor RimP;
InterProD2A893 
PFAMD2A893 
ProdomD2A893 
UniProtKBD3QSP2RecName: Full=Ribosome maturation factor RimP;
InterProD3QSP2 
PFAMD3QSP2 
ProdomD3QSP2 
UniProtKBC3SSN2RecName: Full=Ribosome maturation factor RimP;
InterProC3SSN2 
PFAMC3SSN2 
ProdomC3SSN2 
UniProtKBB3HSC1RecName: Full=Ribosome maturation factor RimP;
InterProB3HSC1 
PFAMB3HSC1 
ProdomB3HSC1 
UniProtKBF9HYK0RecName: Full=Ribosome maturation factor RimP 1;
InterProF9HYK0 
PFAMF9HYK0 
ProdomF9HYK0 
UniProtKBE9YJ56RecName: Full=Ribosome maturation factor RimP;
InterProE9YJ56 
PFAME9YJ56 
ProdomE9YJ56 
UniProtKBE9Y2E2RecName: Full=Ribosome maturation factor RimP;
InterProE9Y2E2 
PFAME9Y2E2 
ProdomE9Y2E2 
UniProtKBE9XGB0RecName: Full=Ribosome maturation factor RimP;
InterProE9XGB0 
PFAME9XGB0 
ProdomE9XGB0 
UniProtKBE9VL27RecName: Full=Ribosome maturation factor RimP;
InterProE9VL27 
PFAME9VL27 
ProdomE9VL27 
UniProtKBE9X6I7RecName: Full=Ribosome maturation factor RimP;
InterProE9X6I7 
PFAME9X6I7 
ProdomE9X6I7 
UniProtKBF4UDW6RecName: Full=Ribosome maturation factor RimP;
InterProF4UDW6 
PFAMF4UDW6 
ProdomF4UDW6 
UniProtKBE9WI67RecName: Full=Ribosome maturation factor RimP;
InterProE9WI67 
PFAME9WI67 
ProdomE9WI67 
UniProtKBE9VAB7RecName: Full=Ribosome maturation factor RimP;
InterProE9VAB7 
PFAME9VAB7 
ProdomE9VAB7 
UniProtKBI0ZV34SubName: Full=Uncharacterized protein;
InterProI0ZV34 
PFAMI0ZV34 
ProdomI0ZV34 
UniProtKBE9WTE9RecName: Full=Ribosome maturation factor RimP;
InterProE9WTE9 
PFAME9WTE9 
ProdomE9WTE9 
UniProtKBE9VZ59RecName: Full=Ribosome maturation factor RimP;
InterProE9VZ59 
PFAME9VZ59 
ProdomE9VZ59 
UniProtKBE9YUS3RecName: Full=Ribosome maturation factor RimP;
InterProE9YUS3 
PFAME9YUS3 
ProdomE9YUS3 
UniProtKBE9Z2Q4RecName: Full=Ribosome maturation factor RimP;
InterProE9Z2Q4 
PFAME9Z2Q4 
ProdomE9Z2Q4 
UniProtKBF0JSP2RecName: Full=Ribosome maturation factor RimP;
InterProF0JSP2 
PFAMF0JSP2 
ProdomF0JSP2 
UniProtKBA0A1S9J1Q5Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077}
InterProA0A1S9J1Q5 
PFAMA0A1S9J1Q5 
ProdomA0A1S9J1Q5 
UniProtKBF4UTJ6RecName: Full=Ribosome maturation factor RimP;
InterProF4UTJ6 
PFAMF4UTJ6 
ProdomF4UTJ6 
UniProtKBA0A7U9AUD2SubName: Full=Putative cytoplasmic protein {ECO:0000313|EMBL:EGI26070.1}
InterProA0A7U9AUD2 
PFAMA0A7U9AUD2 
ProdomA0A7U9AUD2 
UniProtKBQ32BG3Hypothetical protein yhbC
InterProQ32BG3 
PFAMQ32BG3 
ProdomQ32BG3 
UniProtKBI1BAG0SubName: Full=Uncharacterized protein;
InterProI1BAG0 
PFAMI1BAG0 
ProdomI1BAG0 
UniProtKBF4TXS4RecName: Full=Ribosome maturation factor RimP;
InterProF4TXS4 
PFAMF4TXS4 
ProdomF4TXS4 
UniProtKBF4W063RecName: Full=Ribosome maturation factor RimP;
InterProF4W063 
PFAMF4W063 
ProdomF4W063 
UniProtKBQ1R6G7.2RIMP_ECOUT RecName: Full=Ribosome maturation factor rimP
InterProQ1R6G7.2 
PFAMQ1R6G7.2 
ProdomQ1R6G7.2 
UniProtKBP0A8A9.1RIMP_ECOL6 RecName: Full=Ribosome maturation factor rimP
InterProP0A8A9.1 
PFAMP0A8A9.1 
ProdomP0A8A9.1 
UniProtKBP03843RecName: Full=Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077};
InterProP03843 
PFAMP03843 
ProdomP03843 
UniProtKBP0A8B0RecName: Full=Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077};
InterProP0A8B0 
PFAMP0A8B0 
ProdomP0A8B0 
UniProtKBP0A8B0.1RIMP_ECO57 RecName: Full=Ribosome maturation factor rimP
InterProP0A8B0.1 
PFAMP0A8B0.1 
ProdomP0A8B0.1 
UniProtKBB5YS60RecName: Full=Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077};
InterProB5YS60 
PFAMB5YS60 
ProdomB5YS60 
UniProtKBB5YS60.2RIMP_ECO5E RecName: Full=Ribosome maturation factor rimP
InterProB5YS60.2 
PFAMB5YS60.2 
ProdomB5YS60.2 
UniProtKBB6I1P5RecName: Full=Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077};
InterProB6I1P5 
PFAMB6I1P5 
ProdomB6I1P5 
UniProtKBB1LFS2.2RIMP_ECOSM RecName: Full=Ribosome maturation factor rimP
InterProB1LFS2.2 
PFAMB1LFS2.2 
ProdomB1LFS2.2 
UniProtKBP0A8A9RecName: Full=Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077};
InterProP0A8A9 
PFAMP0A8A9 
ProdomP0A8A9 
UniProtKBP0A8B1RecName: Full=Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077};
InterProP0A8B1 
PFAMP0A8B1 
ProdomP0A8B1 
UniProtKBP0A8A8RecName: Full=UPF0090 protein yhbC;
InterProP0A8A8 
PFAMP0A8A8 
ProdomP0A8A8 
UniProtKBP0A8B1.1RIMP_SHIFL RecName: Full=Ribosome maturation factor rimP
InterProP0A8B1.1 
PFAMP0A8B1.1 
ProdomP0A8B1.1 
UniProtKBB1IQV1RecName: Full=Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077};
InterProB1IQV1 
PFAMB1IQV1 
ProdomB1IQV1 
UniProtKBP0A8A8.1YHBC_ECOLI RecName: Full=UPF0090 protein yhbC
InterProP0A8A8.1 
PFAMP0A8A8.1 
ProdomP0A8A8.1 
UniProtKBQ1R6G7RecName: Full=Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077};
InterProQ1R6G7 
PFAMQ1R6G7 
ProdomQ1R6G7 
UniProtKBB1LFS2RecName: Full=Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077};
InterProB1LFS2 
PFAMB1LFS2 
ProdomB1LFS2 
UniProtKBB1IQV1.2RIMP_ECOLC RecName: Full=Ribosome maturation factor rimP
InterProB1IQV1.2 
PFAMB1IQV1.2 
ProdomB1IQV1.2