University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P39398.2
Original Database ID ref NP_418776.1
Organism Escherichia coli, Shigella sp., etc.
Annotation yjjl_ecoli recname: full=inner
membrane transport protein yjjl
Sequence Length 453

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region31-437
Protein Length453
Template PDB Code4iu9B
Template Region30-448
Sequence Identity18%
E-Value0
GA3410.6
MPQS0.985755
z-DOPE0.17
TSVMod MethodMSALL
TSVMod RMSD10.175
TSVMod NO350.494
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB4iu9
DBALI4iu9B 
JenaImageLibrary4iu9 
Target Sequence
UniProtKBA0A0G3HWQ8SubName: Full=L-galactonate transporter protein {ECO:0000313|EMBL:AKK16378.1};
InterProA0A0G3HWQ8 
PFAMA0A0G3HWQ8 
ProdomA0A0G3HWQ8 
UniProtKBE2WQW3SubName: Full=Major Facilitator Superfamily protein;
InterProE2WQW3 
PFAME2WQW3 
ProdomE2WQW3 
UniProtKBP39398RecName: Full=L-galactonate transporter;
InterProP39398 
PFAMP39398 
ProdomP39398 
UniProtKBC9QSW3SubName: Full=Major facilitator superfamily MFS_1;SubName: Full=Putative transporter;
InterProC9QSW3 
PFAMC9QSW3 
ProdomC9QSW3 
UniProtKBC6ULX9SubName: Full=Predicted transporter;
InterProC6ULX9 
PFAMC6ULX9 
ProdomC6ULX9 
UniProtKBT8C0U9SubName: Full=L-galactonate transporter;
InterProT8C0U9 
PFAMT8C0U9 
ProdomT8C0U9 
UniProtKBT9UM44SubName: Full=L-galactonate transporter;
InterProT9UM44 
PFAMT9UM44 
ProdomT9UM44 
UniProtKBC6EBL3SubName: Full=Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACT30658.1};
InterProC6EBL3 
PFAMC6EBL3 
ProdomC6EBL3 
UniProtKBC5W654SubName: Full=Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACT30658.1};
InterProC5W654 
PFAMC5W654 
ProdomC5W654 
UniProtKBC4ZT39SubName: Full=Predicted transporter;
InterProC4ZT39 
PFAMC4ZT39 
ProdomC4ZT39 
UniProtKBB7MMP8SubName: Full=Putative transporter {ECO:0000313|EMBL:CAR06121.1};
InterProB7MMP8 
PFAMB7MMP8 
ProdomB7MMP8 
UniProtKBQ2M5W0RecName: Full=L-galactonate transporter;
InterProQ2M5W0 
PFAMQ2M5W0 
ProdomQ2M5W0 
UniProtKBS0TAD7SubName: Full=L-galactonate transporter;
InterProS0TAD7 
PFAMS0TAD7 
ProdomS0TAD7 
UniProtKBT7KF46SubName: Full=L-galactonate transporter;
InterProT7KF46 
PFAMT7KF46 
ProdomT7KF46 
UniProtKBA0A024L862SubName: Full=Inner membrane transport protein yjjL {ECO:0000313|EMBL:KGM77325.1};SubName: Full=L-galactonate transporter {ECO:0000313|EMBL:AKO55501.1};SubName: Full=Major facilitator superfamily MFS_
InterProA0A024L862 
PFAMA0A024L862 
ProdomA0A024L862 
UniProtKBA0A079D474SubName: Full=L-galactonate transporter {ECO:0000313|EMBL:KDY17023.1};
InterProA0A079D474 
PFAMA0A079D474 
ProdomA0A079D474 
UniProtKBA0A0E2KXK1SubName: Full=L-galactonate transporter {ECO:0000313|EMBL:EQX22167.1};
InterProA0A0E2KXK1 
PFAMA0A0E2KXK1 
ProdomA0A0E2KXK1 
UniProtKBG2B3W9SubName: Full=Major Facilitator Superfamily protein;
InterProG2B3W9 
PFAMG2B3W9 
ProdomG2B3W9 
UniProtKBP39397RecName: Full=L-galactonate transporter;
InterProP39397 
PFAMP39397 
ProdomP39397 
UniProtKBM2NFH8SubName: Full=Putative transporter;
InterProM2NFH8 
PFAMM2NFH8 
ProdomM2NFH8 
UniProtKBI0ZMP4SubName: Full=Major Facilitator Superfamily protein;
InterProI0ZMP4 
PFAMI0ZMP4 
ProdomI0ZMP4 
UniProtKBT8ZKE6SubName: Full=L-galactonate transporter;
InterProT8ZKE6 
PFAMT8ZKE6 
ProdomT8ZKE6 
UniProtKBG2F567SubName: Full=Putative transporter;
InterProG2F567 
PFAMG2F567 
ProdomG2F567 
UniProtKBT7RDE0SubName: Full=L-galactonate transporter;
InterProT7RDE0 
PFAMT7RDE0 
ProdomT7RDE0 
UniProtKBT8UQX3SubName: Full=L-galactonate transporter;
InterProT8UQX3 
PFAMT8UQX3 
ProdomT8UQX3 
UniProtKBT8BL70SubName: Full=L-galactonate transporter;
InterProT8BL70 
PFAMT8BL70 
ProdomT8BL70 
UniProtKBL2UNK6SubName: Full=L-galactonate transporter;
InterProL2UNK6 
PFAML2UNK6 
ProdomL2UNK6 
UniProtKBL3LTX8SubName: Full=L-galactonate transporter;
InterProL3LTX8 
PFAML3LTX8 
ProdomL3LTX8 
UniProtKBE9XR24SubName: Full=Major facilitator superfamily transporter protein transporter {ECO:0000313|EMBL:EGB70980.1};
InterProE9XR24 
PFAME9XR24 
ProdomE9XR24 
UniProtKBB7MMP8SubName: Full=Putative transporter;
InterProB7MMP8 
PFAMB7MMP8 
ProdomB7MMP8 
UniProtKBC4VX83SubName: Full=Major facilitator superfamily MFS_1;
InterProC4VX83 
PFAMC4VX83 
ProdomC4VX83 
UniProtKBC4ZT39SubName: Full=Predicted transporter;
InterProC4ZT39 
PFAMC4ZT39 
ProdomC4ZT39 
UniProtKBQ2M5W0Predicted transporter
InterProQ2M5W0 
PFAMQ2M5W0 
ProdomQ2M5W0 
UniProtKBA0A0M7NHH5SubName: Full=L-galactonate transporter {ECO:0000313|EMBL:CUJ96110.1}
InterProA0A0M7NHH5 
PFAMA0A0M7NHH5 
ProdomA0A0M7NHH5 
UniProtKBA0A140NDF7SubName: Full=MFS transporter {ECO:0000313|EMBL:QJZ14711.1}SubName: Full=Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACT30658.1}
InterProA0A140NDF7 
PFAMA0A140NDF7 
ProdomA0A140NDF7 
UniProtKBA0A656P1I4SubName: Full=L-galactonate transporter {ECO:0000313|EMBL:HAV83706.1}
InterProA0A656P1I4 
PFAMA0A656P1I4 
ProdomA0A656P1I4 
UniProtKBA0A6M6P624SubName: Full=MFS transporter {ECO:0000313|EMBL:QJZ06445.1}
InterProA0A6M6P624 
PFAMA0A6M6P624 
ProdomA0A6M6P624 
UniProtKBA0A8A5H043SubName: Full=MFS transporter {ECO:0000313|EMBL:QTF23773.1}
InterProA0A8A5H043 
PFAMA0A8A5H043 
ProdomA0A8A5H043 
UniProtKBA0A8F8DEM0SubName: Full=MFS transporter {ECO:0000313|EMBL:QXZ36391.1}
InterProA0A8F8DEM0 
PFAMA0A8F8DEM0 
ProdomA0A8F8DEM0 
UniProtKBA0A5Q3TH14SubName: Full=MFS transporter {ECO:0000313|EMBL:QGL43481.1}
InterProA0A5Q3TH14 
PFAMA0A5Q3TH14 
ProdomA0A5Q3TH14 
UniProtKBC5W654SubName: Full=L-galactonate MFS transporter;SubName: Full=Major facilitator superfamily MFS_1;SubName: Full=Predicted transporter;
InterProC5W654 
PFAMC5W654 
ProdomC5W654 
UniProtKBG2B3W9SubName: Full=Major Facilitator Superfamily protein;
InterProG2B3W9 
PFAMG2B3W9 
ProdomG2B3W9 
UniProtKBE9XR24SubName: Full=Major facilitator superfamily transporter protein transporter;
InterProE9XR24 
PFAME9XR24 
ProdomE9XR24 
UniProtKBE2WQW3SubName: Full=Major Facilitator Superfamily protein;
InterProE2WQW3 
PFAME2WQW3 
ProdomE2WQW3 
UniProtKBC9QSW3SubName: Full=Major facilitator superfamily MFS_1;SubName: Full=Putative transporter;
InterProC9QSW3 
PFAMC9QSW3 
ProdomC9QSW3 
UniProtKBI0ZMP4SubName: Full=Major Facilitator Superfamily protein;
InterProI0ZMP4 
PFAMI0ZMP4 
ProdomI0ZMP4 
UniProtKBG2F567SubName: Full=Putative transporter;
InterProG2F567 
PFAMG2F567 
ProdomG2F567 
UniProtKBC6ULX9SubName: Full=Predicted transporter;
InterProC6ULX9 
PFAMC6ULX9 
ProdomC6ULX9 
UniProtKBA0A8F9HA64SubName: Full=MFS transporter {ECO:0000313|EMBL:QYE25166.1}
InterProA0A8F9HA64 
PFAMA0A8F9HA64 
ProdomA0A8F9HA64 
UniProtKBC6EBL3SubName: Full=L-galactonate MFS transporter;SubName: Full=Major facilitator superfamily MFS_1;SubName: Full=Predicted transporter;
InterProC6EBL3 
PFAMC6EBL3 
ProdomC6EBL3 
UniProtKBQ2M5W0RecName: Full=Probable L-galactonate transporter;AltName: Full=Galactonate:H(+) symporter;
InterProQ2M5W0 
PFAMQ2M5W0 
ProdomQ2M5W0 
UniProtKBP39398.2YJJL_ECOLI RecName: Full=Inner membrane transport protein yjjL
InterProP39398.2 
PFAMP39398.2 
ProdomP39398.2 
UniProtKBP39397RecName: Full=Probable L-galactonate transporter;AltName: Full=Galactonate:H(+) symporter;
InterProP39397 
PFAMP39397 
ProdomP39397 
UniProtKBP39398RecName: Full=Probable L-galactonate transporter;AltName: Full=Galactonate:H(+) symporter;
InterProP39398 
PFAMP39398 
ProdomP39398 
RefSeqYP_003056785.1 predicted transporter [Escherichia coli BL21(DE3)]
RefSeqYP_003047394.1 putative transporter [Escherichia coli B str. REL606]
RefSeqYP_003037843.1 major facilitator superfamily MFS_1 [Escherichia coli BL21-Gold(DE3)pLysS AG]
RefSeqYP_003001912.1 hypothetical protein B21_04199 [Escherichia coli BL21]
RefSeqYP_002929240.1 putative transporter [Escherichia coli BW2952]
RefSeqAP_004845.1 predicted transporter [Escherichia coli str. K-12 substr. W3110]
RefSeqNP_418776.1 L-galactonate transporter [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_002394446.1 putative transporter [Escherichia coli S88]
GenPept253980344predicted transporter
GenPept817577473putative L-galactonate:H+ symporter
GenPept7428806F65250 hypothetical 49.4 kD protein in tsr-mdoB intergenic region - Escherichia coli
GenPept732686069L-galactonate transporter
GenPept687679422L-galactonate MFS transporter
GenPept687675111L-galactonate MFS transporter
GenPept682121698L-galactonate transporter
GenPept665441326Major facilitator superfamily MFS_1
GenPept664686648L-galactonate transporter
GenPept557274496putative transporter
GenPept549815627L-galactonate transporter
GenPept254291035 predicted transporter [Escherichia coli BL21(DE3)]
GenPept254164284 putative transporter [Escherichia coli B str. REL606]
GenPept253976187predicted transporter
GenPept253775012 major facilitator superfamily MFS_1 [Escherichia coli BL21-Gold(DE3)pLysS AG]
GenPept253326056major facilitator superfamily MFS_1
GenPept238903444 putative transporter [Escherichia coli BW2952]
GenPept238863187predicted transporter
GenPept2367379putative L-galactonate:H+ symporter
GenPept751403391L-galactonate transporter
GenPept753778565L-galactonate transporter
GenPept932857898D-galactonate transporter
GenPept899734070L-galactonate transporter
GenPept899729549L-galactonate transporter
GenPept899725197L-galactonate transporter
GenPept89111065 predicted transporter [Escherichia coli str. K-12 substr. W3110]
GenPept85677096predicted transporter
GenPept827620644L-galactonate transporter protein
GenPept827618036L-galactonate transporter protein
GenPept817594034putative L-galactonate:H+ symporter
GenPept817589895putative L-galactonate:H+ symporter
GenPept817585754putative L-galactonate:H+ symporter
GenPept817581614putative L-galactonate:H+ symporter
GenPept808733383L-galactonate transporter
GenPept808728971L-galactonate transporter
GenPept808720649L-galactonate transporter
GenPept808698754L-galactonate transporter
GenPept777223096major facilitator superfamily protein (plasmid)