University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P40189
Original Database ID SN P40189_chr5:55272670
Organism Homo sapiens
Annotation recname: full=interleukin-6 receptor
subunit beta;short=il-6r-beta;altname:
full =interleukin-6 signal transducer;altname:
full=membrane glycoprotein ...
Sequence Length 918

Dataset Information:

The newest dataset for this sequence was created on 2006-06-16. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region24-324
Protein Length918
Template PDB Code1i1rA
Template Region2-302
Sequence Identity100%
E-Value1e-21
GA3411
Datasetsnp-human4
ModPipe VersionModPipe1.0
Model Date2006-06-16

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB1i1rcrystal structure of a cytokine/receptor complex ; PFAM: PF00041 ; SCOP: 61545 61546 61547
DBALI1i1rA 
CATH2.60.40.10 Domain: 1i1rA01 Immunoglobulins (100%)
CATH2.60.40.10 Domain: 1i1rA02 Immunoglobulins (100%)
CATH2.60.40.10 Domain: 1i1rA03 Immunoglobulins (100%)
JenaImageLibrary1i1r 
Target Sequence
UniProtKBQ9UQ41RecName: Full=Interleukin-6 receptor subunit beta;Short=IL-6R-beta;AltName: Full=Interleukin-6 signal transducer;AltName: Full=Membrane glycoprotein 130;Short=gp130;AltName: Full=CDw130;AltName: Full=
InterProQ9UQ41 
PFAMQ9UQ41 
ProdomQ9UQ41 
UniProtKBP40189RecName: Full=Interleukin-6 receptor subunit beta;Short=IL-6R-beta;AltName: Full=Interleukin-6 signal transducer;AltName: Full=Membrane glycoprotein 130;Short=gp130;AltName: Full=CDw130;AltName: Full=
InterProP40189 
PFAMP40189 
ProdomP40189 
GenPept449698300Sequence 3 from patent US 8372402
GenPept4504675 interleukin 6 signal transducer (gp130, oncostatin M receptor) [Homo sapiens]
GenPept478674086Sequence 649 from patent US 8404235
GenPept507608804Sequence 728 from patent US 8420089
GenPept53974709Sequence 3 from patent US 6756481
GenPept67607461Sequence 333 from patent US 6900016
GenPept729833IL6B_HUMAN INTERLEUKIN-6 RECEPTOR BETA CHAIN PRECURSOR (IL-6R-BETA) (INTERLEUKIN 6 SIGNAL TRANSDUCER) (MEMBRANE GLYCOPRO
GenPept756687234Sequence 3 from patent US 8795666
GenPept757044984Sequence 728 from patent US 8900580
GenPept757889552Sequence 649 from patent US 8535671
GenPept915665584Sequence 728 from patent US 8992904
GenPept915670598Sequence 728 from patent US 8992908
GenPept915671884Sequence 728 from patent US 8992920
GenPept915733298Sequence 649 from patent US 8999330
GenPept443745015Sequence 728 from patent US 8337847
GenPept430252870Sequence 728 from patent US 8323649
GenPept414690934Sequence 728 from patent US 8277804
GenPept186354membrane glycoprotein 130
GenPept197070755Sequence 3 from patent US 7411041
GenPept228220041Sequence 7 from patent US 7504096
GenPept228316705Sequence 3 from patent US 7510853
GenPept2302933unnamed protein product
GenPept298098901Sequence 3 from patent US 7422743
GenPept303110289Sequence 230 from patent US 7705120
GenPept314159757Sequence 3 from patent US 7749718
GenPept314205084Sequence 3 from patent US 7754214
GenPept331436101Sequence 3 from patent US 7887806
GenPept331509815Sequence 649 from patent US 7906117
GenPept339440579Sequence 3 from patent US 7964703
GenPept378485952Sequence 3 from patent US 8110378
GenPept397017653Sequence 3 from patent US 8097255
GenPept402651639Sequence 649 from patent US 8252286
GenPept106982A36337 membrane glycoprotein gp130 precursor - human
GenBankAAA59155.1 membrane glycoprotein 130 [Homo sapiens]
UCSCGenomeBrowserP40189