University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link 1109792
Original Database ID gi 1109792
Organism Homo sapiens
Annotation protein tyrosine phosphatase sigma
Sequence Length 1948

Dataset Information:

The newest dataset for this sequence was created on 2007-03-20. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region621-967
Protein Length1948
Template PDB Code1l3wA
Template Region5-371
Sequence Identity12%
E-Value2e-21
GA3410.39
DatasetSP/TR-2004
ModPipe VersionModPipe1.0
Model Date2004-10-12

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB1l3wc-cadherin ectodomain ; PFAM: PF00028 ; SCOP: 73553 73554 73555 73556 73557
DBALI1l3wA 
CATH2.60.40.60 Domain: 1l3wA01 Cadherins (96%)
CATH2.60.40.60 Domain: 1l3wA02 Cadherins (100%)
CATH2.60.40.60 Domain: 1l3wA03 Cadherins (100%)
CATH2.60.40.60 Domain: 1l3wA04 Cadherins (42%)
JenaImageLibrary1l3w 
Target Sequence
UniProtKBQ13332Receptor-type protein-tyrosine phosphatase S precursor (EC 3.1.3.48)DE (R-PTP-S) (Protein-tyrosine phosphatase sigma) (R-PTP-sigma)
InterProQ13332 
PFAMQ13332 
ProdomQ13332 
2204414A2204414A protein Tyr phosphatase
GenPept1109792protein tyrosine phosphatase sigma
GenPept15868492204414A protein Tyr phosphatase
GenPept4506327 protein tyrosine phosphatase, receptor type, sigma [Homo sapiens]
GenBankAAC50299.1 protein tyrosine phosphatase sigma [Homo sapiens]
UCSCGenomeBrowserQ13332