University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A8KA79
Original Database ID EN ENSP00000476462.1
Organism Homo sapiens, synthetic construct
Annotation recname: full=usp6 n-terminal-like
protein;altname: full=related
to the n-termin us of tre;short=rn-tre;
Sequence Length 828

Dataset Information:

The newest dataset for this sequence was created on 2020-05-15. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region48-362
Protein Length828
Template PDB Code5tubA
Template Region317-646
Sequence Identity21%
E-Value0
GA3411
MPQS0.532835
z-DOPE-0.12
TSVMod MethodMSALL
TSVMod RMSD7.38
TSVMod NO350.583
DatasetMW-Human_D15
ModPipe VersionSVN.r1693
Model Date2020-05-15

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB5tub
DBALI5tubA 
JenaImageLibrary5tub 
Target Sequence
UniProtKBQ5VV10RecName: Full=USP6 N-terminal-like protein;AltName: Full=Related to the N-terminus of tre;Short=RN-tre;
InterProQ5VV10 
PFAMQ5VV10 
ProdomQ5VV10 
UniProtKBA8KA79RecName: Full=USP6 N-terminal-like protein;AltName: Full=Related to the N-terminus of tre;Short=RN-tre;
InterProA8KA79 
PFAMA8KA79 
ProdomA8KA79 
UniProtKBQ92738RecName: Full=USP6 N-terminal-like protein;AltName: Full=Related to the N-terminus of tre;Short=RN-tre;
InterProQ92738 
PFAMQ92738 
ProdomQ92738 
UniProtKBQ15400RecName: Full=USP6 N-terminal-like protein;AltName: Full=Related to the N-terminus of tre;Short=RN-tre;
InterProQ15400 
PFAMQ15400 
ProdomQ15400 
UniProtKBQ7L0K9RecName: Full=USP6 N-terminal-like protein;AltName: Full=Related to the N-terminus of tre;Short=RN-tre;
InterProQ7L0K9 
PFAMQ7L0K9 
ProdomQ7L0K9 
UniProtKBQ5VV10SubName: Full=HCG24887;SubName: Full=USP6 N-terminal like;
InterProQ5VV10 
PFAMQ5VV10 
ProdomQ5VV10 
UniProtKBQ92738Hypothetical protein KIAA0019 (Related to the N terminus of tre)
InterProQ92738 
PFAMQ92738 
ProdomQ92738 
UniProtKBQ7L0K9USP6NL protein
InterProQ7L0K9 
PFAMQ7L0K9 
ProdomQ7L0K9 
UniProtKBQ15400RecName: Full=USP6 N-terminal-like protein;AltName: Full=Related to the N-terminus of tre;Short=RN-tre;
InterProQ15400 
PFAMQ15400 
ProdomQ15400 
UniProtKBA8KA79RecName: Full=USP6 N-terminal-like protein;AltName: Full=Related to the N-terminus of tre;Short=RN-tre;
InterProA8KA79 
PFAMA8KA79 
ProdomA8KA79 
UniProtKBQ7L0K9RecName: Full=USP6 N-terminal-like protein;AltName: Full=Related to the N-terminus of tre;Short=RN-tre;
InterProQ7L0K9 
PFAMQ7L0K9 
ProdomQ7L0K9 
UniProtKBQ5VV10RecName: Full=USP6 N-terminal-like protein;AltName: Full=Related to the N-terminus of tre;Short=RN-tre;
InterProQ5VV10 
PFAMQ5VV10 
ProdomQ5VV10 
UniProtKBQ92738RecName: Full=USP6 N-terminal-like protein;AltName: Full=Related to the N-terminus of tre;Short=RN-tre;
InterProQ92738 
PFAMQ92738 
ProdomQ92738 
UniProtKBQ92738.3US6NL_HUMAN RecName: Full=USP6 N-terminal-like protein; AltName: Full=Related to the N-terminus of tre; Short=RN-tre
InterProQ92738.3 
PFAMQ92738.3 
ProdomQ92738.3 
RefSeqNP_055503.1 USP6 N-terminal-like protein isoform 1 [Homo sapiens]
RefSeqXP_932502.1 PREDICTED: similar to USP6 N-terminal-like protein (Related to the N-terminus of tre) (RN-tre) isoform 2 [Homo sapiens]
RefSeqXP_943758.1 PREDICTED: similar to USP6 N-terminal-like protein (Related to the N-terminus of tre) (RN-tre) isoform 4 [Homo sapiens]
GenPept2104571KIAA0019 protein
GenPept929653720KIAA0019 protein
GenPept55960242USP6 N-terminal like
GenPept55665192USP6 N-terminal like
GenPept50897492US6NL_HUMAN RecName: Full=USP6 N-terminal-like protein; AltName: Full=Related to the N-terminus of tre; Short=RN-tre
GenPept27695568USP6 N-terminal like
GenPept222080036USP6 N-terminal like
GenPept168274286USP6 N-terminal-like protein, partial
GenPept14742866 related to the N terminus of tre [Homo sapiens]
GenPept119606750hCG24887
GenPept117646130hypothetical protein, partial
GenPept568531133Sequence 10693 from patent US 8586006
GenPept568531135Sequence 10695 from patent US 8586006
GenPept649105555USP6NL, partial
GenPept89031739 PREDICTED: similar to USP6 N-terminal-like protein (Related to the N-terminus of tre) (RN-tre) isoform 4 [Homo sapiens]
GenPept89030783 PREDICTED: similar to USP6 N-terminal-like protein (Related to the N-terminus of tre) (RN-tre) isoform 2 [Homo sapiens]
GenPept117645020hypothetical protein, partial
GenPept7661864 USP6 N-terminal-like protein isoform 1 [Homo sapiens]
GenBankEAW86344.1 hCG24887 [Homo sapiens]
GenBankAAH42943.1 USP6 N-terminal like [Homo sapiens]
ENSEMBLENSP00000277575USP6 N-terminal like protein (Related to the N terminus of tre) (RN- tre). [Homo sapiens]
EMBLCAL38532.1 
EMBLCAL37976.1 
EMBLCAI16966.1 
EMBLCAH70484.1 
UCSCGenomeBrowserQ92738 
ENSEMBLENSP00000277575 
ENSEMBLENSP00000277575TDI sequence
ENSEMBLENSP00000368539