University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P24183.3
Original Database ID 1KQF:A PDBID
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation fdng_ecoli recname: full=formate
dehydrogenase, nitrate-inducible,
major subunit ; altname: full=anaerobic
formate dehydrogenase major subunit;
altnam ...
Sequence Length 1015

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region34-1015
Protein Length1015
Template PDB Code1kqfA
Template Region34-1015
Sequence Identity100%
E-Value0
GA3411
MPQS2.21259
z-DOPE-1.54
TSVMod MethodMSRED
TSVMod RMSD0.721
TSVMod NO350.885
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1kqfformate dehydrogenase n from e. coli ; EC: 1.2.1.2 ; PFAM: PF00037 PF00384 PF01568 PF04879 ; SCOP: 72871 72872
DBALI1kqfA 
CATH3.40.50.740 Domain: 1kqfA02 Rossmann fold (100%)
CATH3.40.228.10 Domain: 1kqfA03 Dimethylsulfoxide Reductase, domain 2 (100%)
CATH2.40.40.20 Domain: 1kqfA04 Barwin-like endoglucanases (100%)
JenaImageLibrary1kqf 
Target Sequence
UniProtKBE6NUU9SubName: Full=Formate dehydrogenase N, nitrate-inducible, alpha subunit;
InterProE6NUU9 
PFAME6NUU9 
ProdomE6NUU9 
UniProtKBP24183RecName: Full=Formate dehydrogenase, nitrate-inducible, major subunit;EC=1.2.1.2;AltName: Full=Anaerobic formate dehydrogenase major subunit;AltName: Full=Formate dehydrogenase-N subunit alpha;Short=F
InterProP24183 
PFAMP24183 
ProdomP24183 
UniProtKBB1XE65SubName: Full=Formate dehydrogenase-N, alpha subunit, nitrate-inducible;
InterProB1XE65 
PFAMB1XE65 
ProdomB1XE65 
UniProtKBP78261RecName: Full=Formate dehydrogenase, nitrate-inducible, major subunit;EC=1.2.1.2;AltName: Full=Anaerobic formate dehydrogenase major subunit;AltName: Full=Formate dehydrogenase-N subunit alpha;Short=F
InterProP78261 
PFAMP78261 
ProdomP78261 
UniProtKBH0QCR8SubName: Full=Formate dehydrogenase-N, alpha subunit, nitrate-inducible;
InterProH0QCR8 
PFAMH0QCR8 
ProdomH0QCR8 
UniProtKBC4ZWP3SubName: Full=Formate dehydrogenase-N, alpha subunit, nitrate-inducible;
InterProC4ZWP3 
PFAMC4ZWP3 
ProdomC4ZWP3 
UniProtKBH0QCR8SubName: Full=Formate dehydrogenase-N, alpha subunit, nitrate-inducible;
InterProH0QCR8 
PFAMH0QCR8 
ProdomH0QCR8 
UniProtKBA0A8G1FY03SubName: Full=Formate dehydrogenase-N subunit alpha {ECO:0000313|EMBL:QZA49008.1}EC=1.17.5.3 {ECO:0000313|EMBL:QZA49008.1}
InterProA0A8G1FY03 
PFAMA0A8G1FY03 
ProdomA0A8G1FY03 
UniProtKBE6NUU9SubName: Full=Formate dehydrogenase N, nitrate-inducible, alpha subunit;
InterProE6NUU9 
PFAME6NUU9 
ProdomE6NUU9 
UniProtKBC4ZWP3SubName: Full=Formate dehydrogenase-N, alpha subunit, nitrate-inducible;
InterProC4ZWP3 
PFAMC4ZWP3 
ProdomC4ZWP3 
UniProtKBB1XE65SubName: Full=Formate dehydrogenase-N, alpha subunit, nitrate-inducible;
InterProB1XE65 
PFAMB1XE65 
ProdomB1XE65 
UniProtKBA0A8F8DFY9SubName: Full=Formate dehydrogenase-N subunit alpha {ECO:0000313|EMBL:QXZ35029.1}EC=1.17.5.3 {ECO:0000313|EMBL:QXZ35029.1}
InterProA0A8F8DFY9 
PFAMA0A8F8DFY9 
ProdomA0A8F8DFY9 
UniProtKBA0A8F9MP99SubName: Full=Formate dehydrogenase-N subunit alpha {ECO:0000313|EMBL:QYE23821.1}EC=1.17.5.3 {ECO:0000313|EMBL:QYE23821.1}
InterProA0A8F9MP99 
PFAMA0A8F9MP99 
ProdomA0A8F9MP99 
UniProtKBA0A5Q2GH42SubName: Full=Formate dehydrogenase-N subunit alpha {ECO:0000313|EMBL:QGF38240.1}
InterProA0A5Q2GH42 
PFAMA0A5Q2GH42 
ProdomA0A5Q2GH42 
UniProtKBA0A5Q3T9F9SubName: Full=Formate dehydrogenase-N subunit alpha {ECO:0000313|EMBL:QGL40855.1}
InterProA0A5Q3T9F9 
PFAMA0A5Q3T9F9 
ProdomA0A5Q3T9F9 
UniProtKBA0A7H5E8X6SubName: Full=Formate dehydrogenase-N subunit alpha {ECO:0000313|EMBL:QMF08738.1}
InterProA0A7H5E8X6 
PFAMA0A7H5E8X6 
ProdomA0A7H5E8X6 
UniProtKBP24183.3FDNG_ECOLI RecName: Full=Formate dehydrogenase, nitrate-inducible, major subunit; AltName: Full=Anaerobic formate dehydrogenase major subunit; AltName: Full=Formate dehydrogenase-N subunit alpha; Shor
InterProP24183.3 
PFAMP24183.3 
ProdomP24183.3 
UniProtKBP78261RecName: Full=Formate dehydrogenase, nitrate-inducible, major subunit;EC=1.1.5.6;AltName: Full=Anaerobic formate dehydrogenase major subunit;AltName: Full=Formate dehydrogenase-N subunit alpha;Short=F
InterProP78261 
PFAMP78261 
ProdomP78261 
UniProtKBP24183RecName: Full=Formate dehydrogenase, nitrate-inducible, major subunit;EC=1.1.5.6;AltName: Full=Anaerobic formate dehydrogenase major subunit;AltName: Full=Formate dehydrogenase-N subunit alpha;Short=F
InterProP24183 
PFAMP24183 
ProdomP24183 
RefSeqNP_415991.1 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_001730465.1 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli str. K-12 substr. DH10B]
RefSeqYP_002926492.1 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli BW2952]
RefSeqAP_002097.1 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli str. K-12 substr. W3110]
PDB1KQGA Chain A, Formate Dehydrogenase N From E. Coli
PDB1KQGAChain A, Formate Dehydrogenase N From E. Coli
PDB1KQFAChain A, Formate Dehydrogenase N From E. Coli
PDB1KQFA Chain A, Formate Dehydrogenase N From E. Coli
GenPept730582659formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept16129433 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli str. K-12 substr. MG1655]
GenPept89108317 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli str. K-12 substr. W3110]
GenPept85674982formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept817594081formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept443760665Sequence 12962 from patent US 8343764
GenPept3868719formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept359331997formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept315136114formate dehydrogenase N, nitrate-inducible, alpha subunit
GenPept238900696 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli BW2952]
GenPept238861130formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept20150979A Chain A, Formate Dehydrogenase N From E. Coli
GenPept20150976A Chain A, Formate Dehydrogenase N From E. Coli
GenPept172046812FDNG_ECOLI RecName: Full=Formate dehydrogenase, nitrate-inducible, major subunit; AltName: Full=Anaerobic formate dehydrogenase major subunit; AltName: Full=Formate dehydrogenase-N subunit alpha; Shor
GenPept170081145 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli str. K-12 substr. DH10B]
GenPept169888980formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept443762461Sequence 14758 from patent US 8343764
GenPept557271807formate dehydrogenase-N subunit alpha, nitrate-inducible
GenPept682118994formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept817587191formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept817583050formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept817578911formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept817574769formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept802134960formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept731470388formate dehydrogenase-N, alpha subunit, nitrate-inducible
GenPept687676627formate dehydrogenase N, alpha subunit, subunit of trimer complex of formate dehydrogenase-N alpha, beta and gamma subunits and formate dehydrogenase-N
GenPept687672352formate dehydrogenase N, alpha subunit, subunit of trimer complex of formate dehydrogenase-N alpha, beta and gamma subunits and formate dehydrogenase-N
GenPept167274030Sequence 832 from patent US 7314974
GenBankAAD13438.1 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli str. K-12 substr. MG1655]
GenBankACB02687.1 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli str. K-12 substr. DH10B]
GenBankACR63128.1 formate dehydrogenase-N, alpha subunit, nitrate-inducible [Escherichia coli BW2952]