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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link 32482808
Original Database ID UP Q8WUI4
Organism Homo sapiens
Annotation histone deacetylase 7a variant
3
Sequence Length 915

Dataset Information:

The newest dataset for this sequence was created on 2013-06-24. If you think that a better template has been added to the template database since, you can start a new calculation.

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Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

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Target Region478-863
Protein Length915
Template PDB Code3c10A
Template Region515-900
Sequence Identity100%
E-Value0
GA3411
MPQS1.66706
z-DOPE-1.56
TSVMod MethodMTALL
TSVMod RMSD0.401
TSVMod NO350.951
DatasetEFI_update-20130509-01-1235
ModPipe VersionSVN.r1409M
Model Date2013-06-24

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Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB3c10crystal structure of catalytic domain of human histone deacetylase hdac7 in complex with trichostatin a (tsa)
DBALI3c10A 
CATH3.40.800.20 Domain: 3c10A00 Arginase; Chain A (100%)
JenaImageLibrary3c10 
Target Sequence
RefSeqNP_057680.3 histone deacetylase 7A isoform b [Homo sapiens]
GenPept119578357histone deacetylase 7A, isoform CRA_b
GenPept32482808histone deacetylase 7A variant 3
GenPept314143537Sequence 2 from patent US 7745173
GenPept223625833Sequence 2 from patent US 7488587
GenPept148539866 histone deacetylase 7A isoform b [Homo sapiens]
GenBankEAW57953.1 histone deacetylase 7A, isoform CRA_b [Homo sapiens]
GenBankAAP84704.1 histone deacetylase 7A variant 3 [Homo sapiens]
ENSEMBLENSP00000351326Histone deacetylase 7a (HD7a). [Homo sapiens]
ENSEMBLENSP00000351326 
ENSEMBLENSP00000351326TDI sequence