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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link P64482
Original Database ID
Organism Escherichia coli, Shigella flexneri, etc.
Annotation recname: full=inner membrane protein
ydjm;flags: precursor;
Sequence Length 200

Dataset Information:

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Model Information

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Target Region12-47
Protein Length200
Template PDB Code1jb0K
Template Region24-77
Sequence Identity25%
E-Value0.54
GA3410.04
MPQS0.0195
z-DOPE2.46
Datasetcsmp_9-09
ModPipe VersionSVNx.x
Model Date2009-10-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1jb0crystal structure of photosystem i: a photosynthetic reaction center and core antenna system from cyanobacteria ; PFAM: PF00037 PF00223 PF00796 PF01241 PF01701 PF02427 PF02507 PF02531 PF02605 ; SCOP: 62828
DBALI1jb0K 
CATH1.20.860.20 Domain: 1jb0K00 Alpha-t-alpha (91%)
JenaImageLibrary1jb0 
Target Sequence
UniProtKBQ3Z276SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AAZ88136.1};
InterProQ3Z276 
PFAMQ3Z276 
ProdomQ3Z276 
UniProtKBB3WNU4SubName: Full=Putative metal-dependent hydrolase, membrane-bound;
InterProB3WNU4 
PFAMB3WNU4 
ProdomB3WNU4 
UniProtKBB3X2E5SubName: Full=Putative metal-dependent hydrolase, membrane-bound {ECO:0000313|EMBL:EDX34381.1};
InterProB3X2E5 
PFAMB3X2E5 
ProdomB3X2E5 
UniProtKBC4ZZ84SubName: Full=Predicted inner membrane protein regulated by LexA;
InterProC4ZZ84 
PFAMC4ZZ84 
ProdomC4ZZ84 
UniProtKBD2AFI6SubName: Full=Inner membrane protein ydjM {ECO:0000313|EMBL:ADA73889.1};
InterProD2AFI6 
PFAMD2AFI6 
ProdomD2AFI6 
UniProtKBF4NFD9SubName: Full=Putative membrane-bound metal-dependent hydrolase {ECO:0000313|EMBL:EGJ04819.1};
InterProF4NFD9 
PFAMF4NFD9 
ProdomF4NFD9 
UniProtKBF4SK71SubName: Full=Inner membrane protein YdjM {ECO:0000313|EMBL:EGI11345.1};
InterProF4SK71 
PFAMF4SK71 
ProdomF4SK71 
UniProtKBF4VFX3SubName: Full=Inner membrane protein YdjM {ECO:0000313|EMBL:EGI45383.1};
InterProF4VFX3 
PFAMF4VFX3 
ProdomF4VFX3 
UniProtKBI0ZT19SubName: Full=Putative metal-dependent hydrolase, membrane-bound;
InterProI0ZT19 
PFAMI0ZT19 
ProdomI0ZT19 
UniProtKBJ7R1V7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CCK46965.1};
InterProJ7R1V7 
PFAMJ7R1V7 
ProdomJ7R1V7 
UniProtKBJ7R547SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CCJ44239.1};
InterProJ7R547 
PFAMJ7R547 
ProdomJ7R547 
UniProtKBB3X2E5SubName: Full=Putative metal-dependent hydrolase, membrane-bound;
InterProB3X2E5 
PFAMB3X2E5 
ProdomB3X2E5 
UniProtKBA0A1X3L3G8SubName: Full=Inner membrane protein YdjM {ECO:0000313|EMBL:OSL64228.1}
InterProA0A1X3L3G8 
PFAMA0A1X3L3G8 
ProdomA0A1X3L3G8 
UniProtKBQ3Z276SubName: Full=Putative uncharacterized protein;
InterProQ3Z276 
PFAMQ3Z276 
ProdomQ3Z276 
UniProtKBC4ZZ84SubName: Full=Predicted inner membrane protein regulated by LexA;
InterProC4ZZ84 
PFAMC4ZZ84 
ProdomC4ZZ84 
UniProtKBD2AFI6SubName: Full=Inner membrane protein ydjM;
InterProD2AFI6 
PFAMD2AFI6 
ProdomD2AFI6 
UniProtKBF4NFD9SubName: Full=Inner membrane protein regulated by LexA;
InterProF4NFD9 
PFAMF4NFD9 
ProdomF4NFD9 
UniProtKBB3WNU4SubName: Full=Putative metal-dependent hydrolase, membrane-bound;
InterProB3WNU4 
PFAMB3WNU4 
ProdomB3WNU4 
UniProtKBF4SK71SubName: Full=Inner membrane protein YdjM;
InterProF4SK71 
PFAMF4SK71 
ProdomF4SK71 
UniProtKBI0ZT19SubName: Full=Putative metal-dependent hydrolase, membrane-bound;
InterProI0ZT19 
PFAMI0ZT19 
ProdomI0ZT19 
UniProtKBA0A1X3JG62SubName: Full=Inner membrane protein YdjM {ECO:0000313|EMBL:OSL08566.1}
InterProA0A1X3JG62 
PFAMA0A1X3JG62 
ProdomA0A1X3JG62 
UniProtKBF4VFX3SubName: Full=Inner membrane protein YdjM;
InterProF4VFX3 
PFAMF4VFX3 
ProdomF4VFX3 
UniProtKBP64482.1YDJM_SHIFL RecName: Full=Inner membrane protein ydjM; Flags: Precursor
InterProP64482.1 
PFAMP64482.1 
ProdomP64482.1 
UniProtKBQ2MB45RecName: Full=Inner membrane protein ydjM;Flags: Precursor;
InterProQ2MB45 
PFAMQ2MB45 
ProdomQ2MB45 
UniProtKBP64481RecName: Full=Inner membrane protein ydjM;Flags: Precursor;
InterProP64481 
PFAMP64481 
ProdomP64481 
UniProtKBP76209RecName: Full=Inner membrane protein ydjM;Flags: Precursor;
InterProP76209 
PFAMP76209 
ProdomP76209 
UniProtKBP64482RecName: Full=Inner membrane protein ydjM;Flags: Precursor;
InterProP64482 
PFAMP64482 
ProdomP64482 
UniProtKBP64481.1YDJM_ECOLI RecName: Full=Inner membrane protein ydjM; Flags: Precursor
InterProP64481.1 
PFAMP64481.1 
ProdomP64481.1 
RefSeqZP_03065805.1 putative metal-dependent hydrolase, membrane-bound [Shigella dysenteriae 1012]
RefSeqZP_03061112.1 putative metal-dependent hydrolase, membrane-bound [Escherichia coli B171]
RefSeqYP_002926738.1 putative inner membrane protein regulated by LexA [Escherichia coli BW2952]
RefSeqNP_416242.5 predicted inner membrane protein regulated by LexA [Escherichia coli K12]
GenPept281600905Inner membrane protein ydjM precursor
GenPept238900942 putative inner membrane protein regulated by LexA [Escherichia coli BW2952]
GenPept238862586predicted inner membrane protein regulated by LexA
GenPept194428573 putative metal-dependent hydrolase, membrane-bound [Escherichia coli B171]
GenPept194418290 putative metal-dependent hydrolase, membrane-bound [Shigella dysenteriae 1012]
GenPept194413451 putative metal-dependent hydrolase, membrane-bound [Escherichia coli B171]
GenPept194433527 putative metal-dependent hydrolase, membrane-bound [Shigella dysenteriae 1012]
GenPept1788023orf, hypothetical protein; LexA regulated gene, possible SOS response
GenPept16129682 (NC_000913) orf, hypothetical protein [Escherichia coli K12]
GenPept145698275 predicted inner membrane protein regulated by LexA [Escherichia coli K12]
GenPept145693147predicted inner membrane protein regulated by LexA
GenPept331039125inner membrane protein YdjM
GenPept331074063inner membrane protein YdjM
GenPept332101473putative membrane-bound metal-dependent hydrolase
GenPept7674434YDJM_ECOLI HYPOTHETICAL 22.8 KDA PROTEIN IN PFKB-CEDA INTERGENIC REGION PRECURSOR
GenPept7466772H64931 probable membrane protein b1728 - Escherichia coli
GenPept73855429conserved hypothetical protein
GenPept568493275Sequence 38 from patent US 8586326
GenPept557272053hypothetical protein BN896_1541
GenPept412963047hypothetical protein BN16_22751
GenPept54042379YDJM_ECOLI RecName: Full=Inner membrane protein ydjM; Flags: Precursor
GenPept54040130YDJM_SHIFL RecName: Full=Inner membrane protein ydjM; Flags: Precursor
GenPept412969601hypothetical protein BN17_19881
GenBankACR64584.1 predicted inner membrane protein regulated by LexA [Escherichia coli BW2952]
GenBankAAZ88136.1 conserved hypothetical protein [Shigella sonnei Ss046]
GenBankAAC74798.3 predicted inner membrane protein regulated by LexA [Escherichia coli K12]
GenBankEDX29734.1 putative metal-dependent hydrolase, membrane-bound [Escherichia coli B171]
GenBankEDX34381.1 putative metal-dependent hydrolase, membrane-bound [Shigella dysenteriae 1012]
GenBankADA73889.1 Inner membrane protein ydjM precursor [Shigella flexneri 2002017]