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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link Q9NPB1
Original Database ID EN ENSP00000373674.4
Organism Homo sapiens
Annotation recname: full=5'(3')-deoxyribonucleotidase,
mitochondrial;short=5',3'-nucleotida
se, mitochondrial;ec=3.1.3.-;altname:
full=deoxy-5'-nucleotidase 2;sh
...
Sequence Length 228

Dataset Information:

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Model Information

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Target Region33-226
Protein Length228
Template PDB Code2jarA
Template Region4-197
Sequence Identity60%
E-Value0
GA3411
MPQS1.68798
z-DOPE-1.48
TSVMod MethodMTALL
TSVMod RMSD0.744
TSVMod NO350.989
Datasethuman_2010_A1
ModPipe VersionSVN.r1188:1193
Model Date2010-11-02

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2jarcrystal structure of d12n variant of mouse cytosolic 5'(3')- deoxyribonucleotidase (cdn) in complex with deoxyuridine 5'- monophosphate
DBALI2jarA 
CATH3.40.50.1000 Domain: 2jarA01 Rossmann fold (99%)
CATH1.10.40.40 Domain: 2jarA02 Deoxyribonucleotidase; domain 2 (100%)
JenaImageLibrary2jar 
Target Sequence
SFLD9910372Structure Function Linkage Database entry: Member of the Haloacid dehalogenase superfamily.
UniProtKBQ9NPB1RecName: Full=5'(3')-deoxyribonucleotidase, mitochondrial;Short=5',3'-nucleotidase, mitochondrial;EC=3.1.3.-;AltName: Full=Deoxy-5'-nucleotidase 2;Short=dNT-2;Flags: Precursor;
InterProQ9NPB1 
PFAMQ9NPB1 
ProdomQ9NPB1 
UniProtKBQ9NPB1.1NT5M_HUMAN RecName: Full=5'(3')-deoxyribonucleotidase, mitochondrial; Short=5',3'-nucleotidase, mitochondrial; AltName: Full=Deoxy-5'-nucleotidase 2; Short=dNT-2; Flags: Precursor
InterProQ9NPB1.1 
PFAMQ9NPB1.1 
ProdomQ9NPB1.1 
UniProtKBQ9NPB1RecName: Full=5'(3')-deoxyribonucleotidase, mitochondrial;Short=5',3'-nucleotidase, mitochondrial;EC=3.1.3.-;AltName: Full=Deoxy-5'-nucleotidase 2;Short=dNT-2;Flags: Precursor;
InterProQ9NPB1 
PFAMQ9NPB1 
ProdomQ9NPB1 
RefSeqNP_064586.1 5'(3')-deoxyribonucleotidase, mitochondrial precursor [Homo sapiens]
GenPept1195761145',3'-nucleotidase, mitochondrial
GenPept9910372 5'(3')-deoxyribonucleotidase, mitochondrial precursor [Homo sapiens]
GenPept9408106mitochondrial 5'(3')-deoxyribonucleotidase (dNT-2)
GenPept9309446AF210652_1 5'(3')-deoxyribonucleotidase
GenPept38258255NT5M_HUMAN RecName: Full=5'(3')-deoxyribonucleotidase, mitochondrial; Short=5',3'-nucleotidase, mitochondrial; AltName: Full=Deoxy-5'-nucleotidase 2; Short=dNT-2; Flags: Precursor
GenPept232735195',3'-nucleotidase, mitochondrial
GenPept13631174 5(3)-deoxyribonucleotidase (dNT-2); nuclear gene for mitochondri [Homo sapiens]
GenBankAAH35838.1 5',3'-nucleotidase, mitochondrial [Homo sapiens]
GenBankEAW55710.1 5',3'-nucleotidase, mitochondrial [Homo sapiens]
GenBankAAF87076.1AF210652_1 5'(3')-deoxyribonucleotidase [Homo sapiens]
EMBLCAB99251.1 
ENSEMBLENSP00000373674 
UCSCGenomeBrowserQ9NPB1