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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link A8K2W5
Original Database ID EN ENSP00000362768.3
Organism Homo sapiens
Annotation subname: full=cdna flj76705, highly
similar to homo sapiens retinoblastoma-like
1 (p107) (rbl1), transcript variant
1, mrna;subname: full=retinoblast
...
Sequence Length 1068

Dataset Information:

The newest dataset for this sequence was created on 2020-05-15. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region799-884
Protein Length1068
Template PDB Code1c9bA
Template Region117-200
Sequence Identity18%
E-Value0.0000033
GA3410.84
MPQS0.497324
z-DOPE-2.03
TSVMod MethodMSALL
TSVMod RMSD3.235
TSVMod NO350.867
DatasetMW-Human_D15
ModPipe VersionSVN.r1693
Model Date2020-05-15

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1c9bcrystal structure of a human tbp core domain-human tfiib core domain complex bound to an extended, modified adenoviral major late promoter (admlp) ; PFAM: PF00352 PF00382 ; SCOP: 18372 18373
DBALI1c9bA 
CATH1.10.472.10 Domain: 1c9bA01 Cyclin A; domain 1 (87%)
JenaImageLibrary1c9b 
Target Sequence
UniProtKBQ9H1M1RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProQ9H1M1 
PFAMQ9H1M1 
ProdomQ9H1M1 
UniProtKBP28749RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProP28749 
PFAMP28749 
ProdomP28749 
UniProtKBQ9H1L5RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProQ9H1L5 
PFAMQ9H1L5 
ProdomQ9H1L5 
UniProtKBA8K2W5RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProA8K2W5 
PFAMA8K2W5 
ProdomA8K2W5 
UniProtKBQ8N5K6RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProQ8N5K6 
PFAMQ8N5K6 
ProdomQ8N5K6 
UniProtKBQ4VXA0RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProQ4VXA0 
PFAMQ4VXA0 
ProdomQ4VXA0 
UniProtKBA8K2W5SubName: Full=cDNA FLJ76705, highly similar to Homo sapiens retinoblastoma-like 1 (p107) (RBL1), transcript variant 1, mRNA;SubName: Full=Retinoblastoma-like 1 (P107), isoform CRA_a;
InterProA8K2W5 
PFAMA8K2W5 
ProdomA8K2W5 
UniProtKBQ4VXA0Retinoblastoma-like 1 (P107)
InterProQ4VXA0 
PFAMQ4VXA0 
ProdomQ4VXA0 
UniProtKBQ4VXA0RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProQ4VXA0 
PFAMQ4VXA0 
ProdomQ4VXA0 
UniProtKBP28749.3RBL1_HUMAN RecName: Full=Retinoblastoma-like protein 1; AltName: Full=107 kDa retinoblastoma-associated protein; Short=p107; AltName: Full=pRb1
InterProP28749.3 
PFAMP28749.3 
ProdomP28749.3 
UniProtKBQ8N5K6RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProQ8N5K6 
PFAMQ8N5K6 
ProdomQ8N5K6 
UniProtKBA8K2W5RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProA8K2W5 
PFAMA8K2W5 
ProdomA8K2W5 
UniProtKBQ9H1L5RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProQ9H1L5 
PFAMQ9H1L5 
ProdomQ9H1L5 
UniProtKBQ9H1M1RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProQ9H1M1 
PFAMQ9H1M1 
ProdomQ9H1M1 
UniProtKBP28749RecName: Full=Retinoblastoma-like protein 1;AltName: Full=107 kDa retinoblastoma-associated protein;Short=p107;AltName: Full=pRb1;
InterProP28749 
PFAMP28749 
ProdomP28749 
RefSeqNP_002886.2 retinoblastoma-like protein 1 isoform a [Homo sapiens]
GenPept66347745retinoblastoma-like 1 (p107)
GenPept66347743retinoblastoma-like 1 (p107)
GenPept34577079 retinoblastoma-like protein 1 isoform a [Homo sapiens]
GenPept756900482Sequence 4 from patent US 8852579
GenPept90103515RBL1_HUMAN RecName: Full=Retinoblastoma-like protein 1; AltName: Full=107 kDa retinoblastoma-associated protein; Short=p107; AltName: Full=pRb1
GenPept168277456retinoblastoma-like protein 1, partial
GenPept158261783unnamed protein product
GenPept119596494retinoblastoma-like 1 (p107), isoform CRA_a
GenPept13653640 retinoblastoma-like 1 (p107) [Homo sapiens]
GenPept66347373retinoblastoma-like 1 (p107)
GenBankEAW76088.1 retinoblastoma-like 1 (p107), isoform CRA_a [Homo sapiens]
ENSEMBLENSP00000262877Retinoblastoma-like protein 1 (107 kDa retinoblastoma-associated protein) (PRB1) (P107). [Homo sapiens]
EMBLCAI95151.1 
EMBLCAI95177.1 
EMBLCAI95716.1 
ENSEMBLENSP00000262877 
ENSEMBLENSP00000262877TDI sequence
ENSEMBLENSP00000362768