University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link 606361
Original Database ID GI 606361
Organism
Annotation sn-glycerol-3-phosphate dehydrogenase
Sequence Length 501

Dataset Information:

The newest dataset for this sequence was created on 2013-06-24. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region1-492
Protein Length501
Template PDB Code1qlaA
Template Region1-504
Sequence Identity12%
E-Value7e-58
GA3410.28
Datasetcsmp_1qla_1007
ModPipe VersionModPipe1.0
Model Date2007-10-05

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1qlamol_id: 1; molecule: fumarate reductase flavoprotein subunit; chain: a, d; ec: 1.3.99.1; other_details: 8-alpha-[-n-epsilon-histidyl] covalent bond between flavin adenine dinucleotide (fad) and his 43; mol_id: 2; molecule: fumarate reductase iron-sulfur protein; chain: b, e; ec: 1.3.99.1; mol_id: 3; molecule: fumarate reductase cytochrome b subunit; chain: c, f; other_details: haem axial ligands - his 44, his 93, his 143 his 182 ; EC: 1.3.99.1 ; PFAM: PF00037 PF00890 PF02910 PF02967 ; SCOP: 16328 30427 42310
DBALI1qlaA 
CATH3.50.50.60 Domain: 1qlaA01 FAD/NAD(P)-binding domain (100%)
CATH3.90.700.10 Domain: 1qlaA02 Flavocytochrome C3; Chain A, domain 1 (100%)
CATH1.20.58.100 Domain: 1qlaA03 Methane Monooxygenase Hydroxylase; Chain G, domain 1 (58%)
JenaImageLibrary1qla 
Target Sequence
GenPept606361Sn-glycerol-3-phosphate dehydrogenase
GenBankAAA58224.1 Sn-glycerol-3-phosphate dehydrogenase [Escherichia coli str. K-12 substr. MG1655]