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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P24928.2
Original Database ID EN ENSP00000314949
Organism Homo sapiens
Annotation rpb1_human recname: full=dna-directed
rna polymerase ii subunit rpb1;
short=rna polymerase ii subunit
b1; altname: full=dna-directed
rna polymerase i ...
Sequence Length 1970

Dataset Information:

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Model Information

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Target Region1495-1964
Protein Length1970
Template PDB Code1ot5A
Template Region127-598
Sequence Identity7%
E-Value5e-14
GA3410
Datasetsnp-human2
ModPipe VersionModPipe1.0
Model Date2005-03-28

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1ot5the 2.4 angstrom crystal sructure of kex2 in complex with a peptidyl-boronic acid inhibitor ; EC: 3.4.21.61 ; PFAM: PF00082 PF01483
DBALI1ot5A 
CATH3.40.50.200 Domain: 1ot5A01 Rossmann fold (99%)
CATH2.60.120.260 Domain: 1ot5A02 Galactose-binding domain-like (99%)
JenaImageLibrary1ot5 
Target Sequence
UniProtKBP24928RecName: Full=DNA-directed RNA polymerase II subunit RPB1;Short=RNA polymerase II subunit B1;EC=2.7.7.6;AltName: Full=DNA-directed RNA polymerase II subunit A;AltName: Full=DNA-directed RNA polymerase
InterProP24928 
PFAMP24928 
ProdomP24928 
UniProtKBB9EH88RecName: Full=DNA-directed RNA polymerase II subunit RPB1;Short=RNA polymerase II subunit B1;EC=2.7.7.6;AltName: Full=DNA-directed RNA polymerase II subunit A;AltName: Full=DNA-directed RNA polymerase
InterProB9EH88 
PFAMB9EH88 
ProdomB9EH88 
UniProtKBA6NN93RecName: Full=DNA-directed RNA polymerase II subunit RPB1;Short=RNA polymerase II subunit B1;EC=2.7.7.6;AltName: Full=DNA-directed RNA polymerase II subunit A;AltName: Full=DNA-directed RNA polymerase
InterProA6NN93 
PFAMA6NN93 
ProdomA6NN93 
UniProtKBA6NN93RecName: Full=DNA-directed RNA polymerase;EC=2.7.7.6;
InterProA6NN93 
PFAMA6NN93 
ProdomA6NN93 
UniProtKBQ6NX41RecName: Full=DNA-directed RNA polymerase II subunit RPB1;Short=RNA polymerase II subunit B1;EC=2.7.7.6;AltName: Full=DNA-directed RNA polymerase II subunit A;AltName: Full=DNA-directed RNA polymerase
InterProQ6NX41 
PFAMQ6NX41 
ProdomQ6NX41 
UniProtKBP24928.2RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase II subunit A; AltName: Full=DNA-directed RNA polymer
InterProP24928.2 
PFAMP24928.2 
ProdomP24928.2 
UniProtKBP24928RecName: Full=DNA-directed RNA polymerase II subunit RPB1;Short=RNA polymerase II subunit B1;EC=2.7.7.6;AltName: Full=DNA-directed RNA polymerase II subunit A;AltName: Full=DNA-directed RNA polymerase
InterProP24928 
PFAMP24928 
ProdomP24928 
UniProtKBB9EH88RecName: Full=DNA-directed RNA polymerase II subunit RPB1;Short=RNA polymerase II subunit B1;EC=2.7.7.6;AltName: Full=DNA-directed RNA polymerase II subunit A;AltName: Full=DNA-directed RNA polymerase
InterProB9EH88 
PFAMB9EH88 
ProdomB9EH88 
UniProtKBA6NN93RecName: Full=DNA-directed RNA polymerase II subunit RPB1;Short=RNA polymerase II subunit B1;EC=2.7.7.6;AltName: Full=DNA-directed RNA polymerase II subunit A;AltName: Full=DNA-directed RNA polymerase
InterProA6NN93 
PFAMA6NN93 
ProdomA6NN93 
PDB6O9LADNA-directed RNA polymerase II subunit RPB1
PDB5IYDADNA-directed RNA polymerase II subunit RPB1
PDB5IYCADNA-directed RNA polymerase II subunit RPB1
PDB5IYBADNA-directed RNA polymerase II subunit RPB1
PDB5IYAADNA-directed RNA polymerase II subunit RPB1
PDB5IY9ADNA-directed RNA polymerase II subunit RPB1
PDB5IY8ADNA-directed RNA polymerase II subunit RPB1
PDB5IY7ADNA-directed RNA polymerase II subunit RPB1
PDB5IY6ADNA-directed RNA polymerase II subunit RPB1
GenPept281185484RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase II subunit A; AltName: Full=DNA-directed RNA polymer
ENSEMBLENSP00000314949