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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P24928
Original Database ID EN ENSP00000494840.1
Organism Callithrix jacchus, Cebus apella, etc.
Annotation recname: full=dna-directed rna
polymerase ii subunit rpb1;short=rna
polymerase i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii ...
Sequence Length 1970

Dataset Information:

The newest dataset for this sequence was created on 2020-05-15. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region11-1538
Protein Length1970
Template PDB Code3h0gA
Template Region9-1495
Sequence Identity57%
E-Value0
GA3411
MPQS1.14313
z-DOPE1.15
DatasetMW-Human_D15
ModPipe VersionSVN.r1693
Model Date2020-05-15

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Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB3h0grna polymerase ii from schizosaccharomyces pombe
DBALI3h0gA 
JenaImageLibrary3h0g 
Target Sequence
UniProtKBQ76M93RecName: Full=DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279};EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
InterProQ76M93 
PFAMQ76M93 
ProdomQ76M93 
UniProtKBA0A0C4DGZ0RecName: Full=DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279};EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
InterProA0A0C4DGZ0 
PFAMA0A0C4DGZ0 
ProdomA0A0C4DGZ0 
UniProtKBF7IJW5RecName: Full=DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279};EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
InterProF7IJW5 
PFAMF7IJW5 
ProdomF7IJW5 
UniProtKBG1REA5RecName: Full=DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279};EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
InterProG1REA5 
PFAMG1REA5 
ProdomG1REA5 
UniProtKBA0A250Y854DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}
InterProA0A250Y854 
PFAMA0A250Y854 
ProdomA0A250Y854 
UniProtKBA0A671F2F4DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}
InterProA0A671F2F4 
PFAMA0A671F2F4 
ProdomA0A671F2F4 
UniProtKBA0A6I9L929DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}
InterProA0A6I9L929 
PFAMA0A6I9L929 
ProdomA0A6I9L929 
UniProtKBA0A6J0ZAW1DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}
InterProA0A6J0ZAW1 
PFAMA0A6J0ZAW1 
ProdomA0A6J0ZAW1 
UniProtKBA0A6J3I271DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}
InterProA0A6J3I271 
PFAMA0A6J3I271 
ProdomA0A6J3I271 
UniProtKBA0A8C3YDQ4SubName: Full=RNA polymerase II subunit A {ECO:0000313|Ensembl:ENSCWAP00000004852}
InterProA0A8C3YDQ4 
PFAMA0A8C3YDQ4 
ProdomA0A8C3YDQ4 
UniProtKBA0A8C6A124SubName: Full=RNA polymerase II subunit A {ECO:0000313|Ensembl:ENSMMMP00000022346}
InterProA0A8C6A124 
PFAMA0A8C6A124 
ProdomA0A8C6A124 
UniProtKBA0A8C6QED2SubName: Full=RNA polymerase II subunit A {ECO:0000313|Ensembl:ENSNGAP00000002759}
InterProA0A8C6QED2 
PFAMA0A8C6QED2 
ProdomA0A8C6QED2 
UniProtKBA0A8C9P7H7SubName: Full=RNA polymerase II subunit A {ECO:0000313|Ensembl:ENSSDAP00000003405}
InterProA0A8C9P7H7 
PFAMA0A8C9P7H7 
ProdomA0A8C9P7H7 
UniProtKBA0A8D1DPV6SubName: Full=RNA polymerase II subunit A {ECO:0000313|Ensembl:ENSSSCP00040010721}
InterProA0A8D1DPV6 
PFAMA0A8D1DPV6 
ProdomA0A8D1DPV6 
UniProtKBA0A8D2D8K3SubName: Full=RNA polymerase II subunit A {ECO:0000313|Ensembl:ENSSVLP00005021730}
InterProA0A8D2D8K3 
PFAMA0A8D2D8K3 
ProdomA0A8D2D8K3 
UniProtKBA0A8D2HZZ9SubName: Full=RNA polymerase II subunit A {ECO:0000313|Ensembl:ENSUPAP00010019208}
InterProA0A8D2HZZ9 
PFAMA0A8D2HZZ9 
ProdomA0A8D2HZZ9 
UniProtKBA0A9N6XGD7DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}
InterProA0A9N6XGD7 
PFAMA0A9N6XGD7 
ProdomA0A9N6XGD7 
UniProtKBA0A2K6RYV7DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}
InterProA0A2K6RYV7 
PFAMA0A2K6RYV7 
ProdomA0A2K6RYV7 
UniProtKBA0A2K5PS73DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}
InterProA0A2K5PS73 
PFAMA0A2K5PS73 
ProdomA0A2K5PS73 
UniProtKBA0A2K5C6X9DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}
InterProA0A2K5C6X9 
PFAMA0A2K5C6X9 
ProdomA0A2K5C6X9 
UniProtKBQ76M93RecName: Full=DNA-directed RNA polymerase;EC=2.7.7.6;
InterProQ76M93 
PFAMQ76M93 
ProdomQ76M93 
UniProtKBA0A8B7T475SubName: Full=DNA-directed RNA polymerase II subunit RPB1 {ECO:0000313|RefSeq:XP_019520502.1}
InterProA0A8B7T475 
PFAMA0A8B7T475 
ProdomA0A8B7T475 
UniProtKBB9EH88RecName: Full=DNA-directed RNA polymerase;EC=2.7.7.6;
InterProB9EH88 
PFAMB9EH88 
ProdomB9EH88 
UniProtKBG1REA5RecName: Full=DNA-directed RNA polymerase;EC=2.7.7.6;
InterProG1REA5 
PFAMG1REA5 
ProdomG1REA5 
UniProtKBF7IJW5RecName: Full=DNA-directed RNA polymerase;EC=2.7.7.6;
InterProF7IJW5 
PFAMF7IJW5 
ProdomF7IJW5 
UniProtKBA0A1S3EWL2DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}
InterProA0A1S3EWL2 
PFAMA0A1S3EWL2 
ProdomA0A1S3EWL2 
UniProtKBP24928.1RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase II subunit A; AltName: Full=DNA-directed RNA polymer
InterProP24928.1 
PFAMP24928.1 
ProdomP24928.1 
UniProtKBP24928RecName: Full=DNA-directed RNA polymerase II subunit RPB1;Short=RNA polymerase II subunit B1;EC=2.7.7.6;AltName: Full=DNA-directed RNA polymerase II subunit A;AltName: Full=DNA-directed RNA polymerase
InterProP24928 
PFAMP24928 
ProdomP24928 
RefSeqXP_008854027.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_008960695.2DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_016786944.1DNA-directed RNA polymerase II subunit RPB1 isoform X1
RefSeqXP_019520502.1PREDICTED: DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_015359901.1PREDICTED: DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_021503860.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_024090775.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_040604891.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_037347743.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_036308369.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_035155768.1DNA-directed RNA polymerase II subunit RPB1 isoform X1
RefSeqXP_032945687.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_031996019.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_028725297.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_028635920.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_027802584.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_026246271.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_026246270.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_034360837.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_041520333.1DNA-directed RNA polymerase II subunit RPB1
RefSeqXP_005349818.1DNA-directed RNA polymerase II subunit RPB1 isoform X1
RefSeqXP_004058534.2DNA-directed RNA polymerase II subunit RPB1
RefSeqNP_000928.1 DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
RefSeqXP_031210336.1DNA-directed RNA polymerase II subunit RPB1
PDB6DRDADNA-directed RNA polymerase II subunit RPB1
PDB6EXVADNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
PDB6GMLADNA-directed RNA polymerase subunit
GenPept105878S21054 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - human
GenPept133326RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase II subunit A; AltName: Full=DNA-directed RNA polymer
GenPept14328881RNA polymerase II largest subunit
GenPept223460954Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
GenPept239688580Sequence 45 from patent US 7541429
GenPept2443336RNA polymerase II largest subunit
GenPept314685187Sequence 10 from patent US 7833736
GenPept4505939 DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
GenPept36124RNA polymerase II largest subunit
GenPept53971993Sequence 1005 from patent US 6753314
GenPept119610587polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform CRA_a
GenBankEAW90181.1 polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform CRA_a [Homo sapiens]
GenBankAAI37232.1 Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo sapiens]
EMBLCAA45125.1 
UCSCGenomeBrowserP24928