University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link 39654107
Original Database ID GI 39654106
Organism Escherichia coli
Annotation a chain a, crystal structure of
a d,l-lysine complex of diaminopimelate
decarbox ylase
Sequence Length 425

Dataset Information:

The newest dataset for this sequence was created on 2013-06-24. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region9-420
Protein Length425
Template PDB Code1tufA
Template Region25-443
Sequence Identity28%
E-Value5e-63
GA3411
Datasetnysgxrc_1tuf_3-06
ModPipe VersionModPipe1.0
Model Date2006-03-22

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1tufcrystal structure of diaminopimelate decarboxylase from m. jannaschi
DBALI1tufA 
CATH2.40.37.10 Domain: 1tufA01 Lyase, Ornithine Decarboxylase; Chain A, domain 1 (97%)
CATH3.20.20.10 Domain: 1tufA02 Alanine racemase (100%)
JenaImageLibrary1tuf 
Target Sequence
PDB1KNWA Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
PDB1KNWAChain A, Crystal Structure Of Diaminopimelate Decarboxylase
PDB1KO0A Chain A, Crystal Structure Of A D,L-Lysine Complex Of Diaminopimelate Decarboxylase
PDB1KO0AChain A, Crystal Structure Of A D,L-Lysine Complex Of Diaminopimelate Decarboxylase
GenPept39654106A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
GenPept39654107A Chain A, Crystal Structure Of A D,L-Lysine Complex Of Diaminopimelate Decarboxylase