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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link 39654107
Original Database ID GI 39654106
Organism Escherichia coli
Annotation a chain a, crystal structure of
a d,l-lysine complex of diaminopimelate
decarbox ylase
Sequence Length 425

Dataset Information:

The newest dataset for this sequence was created on 2013-06-24. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region2-422
Protein Length425
Template PDB Code1knwA
Template Region2-422
Sequence Identity100%
E-Value0
GA3411
MPQS2.21779
z-DOPE-1.33
TSVMod MethodMTALL
TSVMod RMSD0.355
TSVMod NO350.995
DatasetEFI_update-20130509-01-1235
ModPipe VersionSVN.r1409M
Model Date2013-06-24

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1knwcrystal structure of diaminopimelate decarboxylase
DBALI1knwA 
CATH2.40.37.10 Domain: 1knwA01 Lyase, Ornithine Decarboxylase; Chain A, domain 1 (100%)
CATH3.20.20.10 Domain: 1knwA02 Alanine racemase (100%)
JenaImageLibrary1knw 
Target Sequence
PDB1KNWA Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
PDB1KNWAChain A, Crystal Structure Of Diaminopimelate Decarboxylase
PDB1KO0A Chain A, Crystal Structure Of A D,L-Lysine Complex Of Diaminopimelate Decarboxylase
PDB1KO0AChain A, Crystal Structure Of A D,L-Lysine Complex Of Diaminopimelate Decarboxylase
GenPept39654106A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
GenPept39654107A Chain A, Crystal Structure Of A D,L-Lysine Complex Of Diaminopimelate Decarboxylase