University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A029KSG3
Original Database ID ref YP_026162.2
Organism Escherichia coli, Klebsiella oxytoca, etc.
Annotation subname: full=branched-chain amino
acid transport system / permease
component fa mily protein {eco:0000313|embl:ezj76015.1};
Sequence Length 328

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region67-291
Protein Length328
Template PDB Code2ns1A
Template Region105-358
Sequence Identity32%
E-Value0.57
GA3410.06
MPQS0.603076
z-DOPE1.32
TSVMod MethodMSALL
TSVMod RMSD18.786
TSVMod NO350.096
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2ns1crystal structure of the e. coli ammonia channel amtb complexed with the signal transduction protein glnk
DBALI2ns1A 
CATH1.10.3430.10 Domain: 2ns1A00 Ammonium transporter AmtB like domains (63%)
JenaImageLibrary2ns1 
Target Sequence
UniProtKBI6D569SubName: Full=Branched-chain amino acid transport system / permease component family protein;
InterProI6D569 
PFAMI6D569 
ProdomI6D569 
UniProtKBA0A0E1SZQ5SubName: Full=L-arabinose ABC transporter, permease protein {ECO:0000313|EMBL:EDU65095.1};EC=3.6.3.17 {ECO:0000313|EMBL:EDU65095.1};
InterProA0A0E1SZQ5 
PFAMA0A0E1SZQ5 
ProdomA0A0E1SZQ5 
UniProtKBA0A0E2L488SubName: Full=L-arabinose transport system permease AraH {ECO:0000313|EMBL:EQX27387.1};
InterProA0A0E2L488 
PFAMA0A0E2L488 
ProdomA0A0E2L488 
UniProtKBA0A0G3HGP3SubName: Full=Fused L-arabinose transporter subunits of ABC superfamily: membrane components protein {ECO:0000313|EMBL:AKK12469.1};
InterProA0A0G3HGP3 
PFAMA0A0G3HGP3 
ProdomA0A0G3HGP3 
UniProtKBA0A0G3IVY3SubName: Full=Arabinose ABC transporter permease {ECO:0000313|EMBL:AKK33400.1};EC=3.6.3.17 {ECO:0000313|EMBL:AKK33400.1};
InterProA0A0G3IVY3 
PFAMA0A0G3IVY3 
ProdomA0A0G3IVY3 
UniProtKBA0A0G3KJB8SubName: Full=Arabinose ABC transporter permease {ECO:0000313|EMBL:AKK54484.1};EC=3.6.3.17 {ECO:0000313|EMBL:AKK54484.1};
InterProA0A0G3KJB8 
PFAMA0A0G3KJB8 
ProdomA0A0G3KJB8 
UniProtKBA0A0H3X642SubName: Full=Fused L-arabinose transporter subunits of ABC superfamily: membrane components {ECO:0000313|EMBL:AKM35447.1};
InterProA0A0H3X642 
PFAMA0A0H3X642 
ProdomA0A0H3X642 
UniProtKBF5NHK8SubName: Full=L-arabinose transport system permease protein araH;EC=3.6.3.17;
InterProF5NHK8 
PFAMF5NHK8 
ProdomF5NHK8 
UniProtKBF7MXP8SubName: Full=L-arabinose transport system permease protein AraH;
InterProF7MXP8 
PFAMF7MXP8 
ProdomF7MXP8 
UniProtKBF5QZD7SubName: Full=Branched-chain amino acid transport system / permease component family protein;
InterProF5QZD7 
PFAMF5QZD7 
ProdomF5QZD7 
UniProtKBF9CJP0SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProF9CJP0 
PFAMF9CJP0 
ProdomF9CJP0 
UniProtKBA0A0C7MR04SubName: Full=L-arabinose transporter permease {ECO:0000313|EMBL:CEP56892.1};EC=3.6.3.17 {ECO:0000313|EMBL:CEP56892.1};
InterProA0A0C7MR04 
PFAMA0A0C7MR04 
ProdomA0A0C7MR04 
UniProtKBA0A0A0FEK3SubName: Full=L-arabinose transport system permease protein AraH {ECO:0000313|EMBL:KGM60885.1};
InterProA0A0A0FEK3 
PFAMA0A0A0FEK3 
ProdomA0A0A0FEK3 
UniProtKBE9VPX4SubName: Full=Branched-chain amino acid transport system/permease component protein;
InterProE9VPX4 
PFAME9VPX4 
ProdomE9VPX4 
UniProtKBB2NA96SubName: Full=L-arabinose ABC transporter, permease protein;EC=3.6.3.17;
InterProB2NA96 
PFAMB2NA96 
ProdomB2NA96 
UniProtKBB3HUM9SubName: Full=L-arabinose ABC transporter, permease protein;EC=3.6.3.17;
InterProB3HUM9 
PFAMB3HUM9 
ProdomB3HUM9 
UniProtKBJ9ZL15SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProJ9ZL15 
PFAMJ9ZL15 
ProdomJ9ZL15 
UniProtKBK0ALP5SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProK0ALP5 
PFAMK0ALP5 
ProdomK0ALP5 
UniProtKBJ2Z4T4SubName: Full=Branched-chain amino acid transport system / permease component family protein;
InterProJ2Z4T4 
PFAMJ2Z4T4 
ProdomJ2Z4T4 
UniProtKBK3IR58SubName: Full=L-arabinose transport system permease protein AraH;EC=3.6.3.17;
InterProK3IR58 
PFAMK3IR58 
ProdomK3IR58 
UniProtKBC6EBT1SubName: Full=Inner-membrane translocator {ECO:0000313|EMBL:ACT28793.1};
InterProC6EBT1 
PFAMC6EBT1 
ProdomC6EBT1 
UniProtKBK3KQZ5SubName: Full=L-arabinose transport system permease protein AraH {ECO:0000313|EMBL:EKI52861.1};EC=3.6.3.17 {ECO:0000313|EMBL:EKI52861.1};
InterProK3KQZ5 
PFAMK3KQZ5 
ProdomK3KQZ5 
UniProtKBD5D4S7SubName: Full=L-arabinose ABC transporter, permease protein;EC=3.6.3.17;
InterProD5D4S7 
PFAMD5D4S7 
ProdomD5D4S7 
UniProtKBE9V7P8SubName: Full=Branched-chain amino acid transport system/permease component protein;
InterProE9V7P8 
PFAME9V7P8 
ProdomE9V7P8 
UniProtKBF5Q6E9SubName: Full=L-arabinose transport system permease protein araH;EC=3.6.3.17;
InterProF5Q6E9 
PFAMF5Q6E9 
ProdomF5Q6E9 
UniProtKBF3WJJ5SubName: Full=L-arabinose transport system permease protein araH {ECO:0000313|EMBL:EGI94733.1};EC=3.6.3.17 {ECO:0000313|EMBL:EGI94733.1};
InterProF3WJJ5 
PFAMF3WJJ5 
ProdomF3WJJ5 
UniProtKBA0A069XJ84SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDU30146.1};
InterProA0A069XJ84 
PFAMA0A069XJ84 
ProdomA0A069XJ84 
UniProtKBA0A069Z7J4SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDU55668.1};
InterProA0A069Z7J4 
PFAMA0A069Z7J4 
ProdomA0A069Z7J4 
UniProtKBA0A070NMM5SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDW69852.1};
InterProA0A070NMM5 
PFAMA0A070NMM5 
ProdomA0A070NMM5 
UniProtKBA0A070PSZ0SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDW83205.1};
InterProA0A070PSZ0 
PFAMA0A070PSZ0 
ProdomA0A070PSZ0 
UniProtKBA0A070SY00SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDX21594.1};
InterProA0A070SY00 
PFAMA0A070SY00 
ProdomA0A070SY00 
UniProtKBA0A070V3S4SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDX48459.1};
InterProA0A070V3S4 
PFAMA0A070V3S4 
ProdomA0A070V3S4 
UniProtKBA0A071AJM0SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDY60682.1};
InterProA0A071AJM0 
PFAMA0A071AJM0 
ProdomA0A071AJM0 
UniProtKBA0A073HFD4SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KEJ75906.1};
InterProA0A073HFD4 
PFAMA0A073HFD4 
ProdomA0A073HFD4 
UniProtKBA0A073U038SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KEL28595.1};
InterProA0A073U038 
PFAMA0A073U038 
ProdomA0A073U038 
UniProtKBA0A073ULI6SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KEL68357.1};
InterProA0A073ULI6 
PFAMA0A073ULI6 
ProdomA0A073ULI6 
UniProtKBA0A029MLP9SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:EZJ98633.1};
InterProA0A029MLP9 
PFAMA0A029MLP9 
ProdomA0A029MLP9 
UniProtKBA0A029LKA3SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:EZJ85843.1};
InterProA0A029LKA3 
PFAMA0A029LKA3 
ProdomA0A029LKA3 
UniProtKBA0A029KSG3SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:EZJ76015.1};
InterProA0A029KSG3 
PFAMA0A029KSG3 
ProdomA0A029KSG3 
UniProtKBG2EY01SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProG2EY01 
PFAMG2EY01 
ProdomG2EY01 
UniProtKBG5KN09SubName: Full=L-arabinose transporter permease protein;
InterProG5KN09 
PFAMG5KN09 
ProdomG5KN09 
UniProtKBG1YQ50SubName: Full=L-arabinose transport system permease protein araH;EC=3.6.3.17;
InterProG1YQ50 
PFAMG1YQ50 
ProdomG1YQ50 
UniProtKBG5VQH6SubName: Full=L-arabinose transport system permease AraH;
InterProG5VQH6 
PFAMG5VQH6 
ProdomG5VQH6 
UniProtKBG5VAY3SubName: Full=L-arabinose transport system permease AraH;
InterProG5VAY3 
PFAMG5VAY3 
ProdomG5VAY3 
UniProtKBG5X916SubName: Full=L-arabinose transport system permease AraH;
InterProG5X916 
PFAMG5X916 
ProdomG5X916 
UniProtKBG5UU87SubName: Full=L-arabinose transport system permease AraH;
InterProG5UU87 
PFAMG5UU87 
ProdomG5UU87 
UniProtKBG0F9J3SubName: Full=L-arabinose transport system permease protein araH {ECO:0000313|EMBL:AEJ56995.1};
InterProG0F9J3 
PFAMG0F9J3 
ProdomG0F9J3 
UniProtKBH1EGY2SubName: Full=L-arabinose transport system permease AraH;
InterProH1EGY2 
PFAMH1EGY2 
ProdomH1EGY2 
UniProtKBG5YHY5SubName: Full=L-arabinose transport system permease AraH;
InterProG5YHY5 
PFAMG5YHY5 
ProdomG5YHY5 
UniProtKBA0A074IKQ0SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KEO11517.1};
InterProA0A074IKQ0 
PFAMA0A074IKQ0 
ProdomA0A074IKQ0 
UniProtKBA8A1A2SubName: Full=L-arabinose ABC transporter, permease protein;EC=3.6.3.17;
InterProA8A1A2 
PFAMA8A1A2 
ProdomA8A1A2 
UniProtKBA0A079DBT4SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDY19381.1};
InterProA0A079DBT4 
PFAMA0A079DBT4 
ProdomA0A079DBT4 
UniProtKBK0BQY0SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProK0BQY0 
PFAMK0BQY0 
ProdomK0BQY0 
UniProtKBA0A080IV44SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KEO33629.1};
InterProA0A080IV44 
PFAMA0A080IV44 
ProdomA0A080IV44 
UniProtKBA0A0F6EDZ1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AIL41062.1};
InterProA0A0F6EDZ1 
PFAMA0A0F6EDZ1 
ProdomA0A0F6EDZ1 
UniProtKBF5PSA3SubName: Full=L-arabinose transport system permease protein araH;EC=3.6.3.17;
InterProF5PSA3 
PFAMF5PSA3 
ProdomF5PSA3 
UniProtKBF9I1F9SubName: Full=L-arabinose transport system permease AraH;SubName: Full=Uncharacterized protein;
InterProF9I1F9 
PFAMF9I1F9 
ProdomF9I1F9 
UniProtKBG5U9D8SubName: Full=L-arabinose transport system permease AraH;
InterProG5U9D8 
PFAMG5U9D8 
ProdomG5U9D8 
UniProtKBG5XDZ8SubName: Full=L-arabinose transport system permease AraH;
InterProG5XDZ8 
PFAMG5XDZ8 
ProdomG5XDZ8 
UniProtKBH4X6H7SubName: Full=Branched-chain amino acid transport system / permease component family protein;
InterProH4X6H7 
PFAMH4X6H7 
ProdomH4X6H7 
UniProtKBF9QUR2SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProF9QUR2 
PFAMF9QUR2 
ProdomF9QUR2 
UniProtKBI4TAS5SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProI4TAS5 
PFAMI4TAS5 
ProdomI4TAS5 
UniProtKBI6DN89SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:EIQ33231.1};
InterProI6DN89 
PFAMI6DN89 
ProdomI6DN89 
UniProtKBI4SU94SubName: Full=L-arabinose transporter permease protein {ECO:0000313|EMBL:EIL54035.1};EC=3.6.3.17 {ECO:0000313|EMBL:EIL54035.1};
InterProI4SU94 
PFAMI4SU94 
ProdomI4SU94 
UniProtKBA0A079F6L6SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDY53481.1};
InterProA0A079F6L6 
PFAMA0A079F6L6 
ProdomA0A079F6L6 
UniProtKBI2ZQE8SubName: Full=L-arabinose ABC transporter, permease protein AraH;
InterProI2ZQE8 
PFAMI2ZQE8 
ProdomI2ZQE8 
UniProtKBA0A079FS00SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KDY63081.1};
InterProA0A079FS00 
PFAMA0A079FS00 
ProdomA0A079FS00 
UniProtKBG2CL21SubName: Full=L-arabinose transport system permease protein araH;EC=3.6.3.17;
InterProG2CL21 
PFAMG2CL21 
ProdomG2CL21 
UniProtKBI2X9F9SubName: Full=L-arabinose ABC transporter, permease protein AraH {ECO:0000313|EMBL:EII45629.1};
InterProI2X9F9 
PFAMI2X9F9 
ProdomI2X9F9 
UniProtKBB3IMG1SubName: Full=L-arabinose ABC transporter, permease protein;EC=3.6.3.17;
InterProB3IMG1 
PFAMB3IMG1 
ProdomB3IMG1 
UniProtKBA0A080I892SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KEO24045.1};
InterProA0A080I892 
PFAMA0A080I892 
ProdomA0A080I892 
UniProtKBF5PC85SubName: Full=L-arabinose transport system permease protein araH;EC=3.6.3.17;
InterProF5PC85 
PFAMF5PC85 
ProdomF5PC85 
UniProtKBG5TZ96SubName: Full=L-arabinose transport system permease AraH;
InterProG5TZ96 
PFAMG5TZ96 
ProdomG5TZ96 
UniProtKBH4VHF3SubName: Full=Branched-chain amino acid transport system / permease component family protein;
InterProH4VHF3 
PFAMH4VHF3 
ProdomH4VHF3 
UniProtKBI4UBM1SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProI4UBM1 
PFAMI4UBM1 
ProdomI4UBM1 
UniProtKBB1J0J2SubName: Full=Monosaccharide-transporting ATPase;EC=3.6.3.17;
InterProB1J0J2 
PFAMB1J0J2 
ProdomB1J0J2 
UniProtKBI0VDZ1SubName: Full=L-arabinose transporter permease;
InterProI0VDZ1 
PFAMI0VDZ1 
ProdomI0VDZ1 
UniProtKBG5TK42SubName: Full=L-arabinose transport system permease AraH;
InterProG5TK42 
PFAMG5TK42 
ProdomG5TK42 
UniProtKBG5W751SubName: Full=L-arabinose transport system permease AraH;
InterProG5W751 
PFAMG5W751 
ProdomG5W751 
UniProtKBG5WUF2SubName: Full=L-arabinose transport system permease AraH;
InterProG5WUF2 
PFAMG5WUF2 
ProdomG5WUF2 
UniProtKBH1DS38SubName: Full=L-arabinose transport system permease AraH;
InterProH1DS38 
PFAMH1DS38 
ProdomH1DS38 
UniProtKBH4V237SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:EHV57358.1};
InterProH4V237 
PFAMH4V237 
ProdomH4V237 
UniProtKBG5XY21SubName: Full=L-arabinose transport system permease AraH;
InterProG5XY21 
PFAMG5XY21 
ProdomG5XY21 
UniProtKBE9WX03SubName: Full=Branched-chain amino acid transport system/permease component protein;
InterProE9WX03 
PFAME9WX03 
ProdomE9WX03 
UniProtKBI2Y8F0SubName: Full=L-arabinose ABC transporter, permease protein AraH;
InterProI2Y8F0 
PFAMI2Y8F0 
ProdomI2Y8F0 
UniProtKBI4JAR6SubName: Full=L-arabinose transport system permease AraH {ECO:0000313|EMBL:EIF86325.1};
InterProI4JAR6 
PFAMI4JAR6 
ProdomI4JAR6 
UniProtKBI2IAA3SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProI2IAA3 
PFAMI2IAA3 
ProdomI2IAA3 
UniProtKBE9Y033SubName: Full=Branched-chain amino acid transport system/permease component protein;
InterProE9Y033 
PFAME9Y033 
ProdomE9Y033 
UniProtKBF8YG44SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProF8YG44 
PFAMF8YG44 
ProdomF8YG44 
UniProtKBF7R9Z0SubName: Full=Branched-chain amino acid transport system / permease component family protein;
InterProF7R9Z0 
PFAMF7R9Z0 
ProdomF7R9Z0 
UniProtKBC1HLS3SubName: Full=L-arabinose ABC transporter, permease protein AraH;
InterProC1HLS3 
PFAMC1HLS3 
ProdomC1HLS3 
UniProtKBC4ZQI0SubName: Full=Fused L-arabinose transporter subunits of ABC superfamily: membrane components;
InterProC4ZQI0 
PFAMC4ZQI0 
ProdomC4ZQI0 
UniProtKBC9QT40SubName: Full=L-arabinose transporter permease protein;SubName: Full=Monosaccharide-transporting ATPase;EC=3.6.3.17;
InterProC9QT40 
PFAMC9QT40 
ProdomC9QT40 
UniProtKBI6H300SubName: Full=Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:EIQ75142.1};
InterProI6H300 
PFAMI6H300 
ProdomI6H300 
UniProtKBA0A094NFN0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDX07308.1};
InterProA0A094NFN0 
PFAMA0A094NFN0 
ProdomA0A094NFN0 
UniProtKBA0A0E0XZ59SubName: Full=L-arabinose transporter permease protein {ECO:0000313|EMBL:AFS73919.1};EC=3.6.3.17 {ECO:0000313|EMBL:AFS73919.1};
InterProA0A0E0XZ59 
PFAMA0A0E0XZ59 
ProdomA0A0E0XZ59 
UniProtKBA0A0F6MDW9SubName: Full=L-arabinose transporter permease {ECO:0000313|EMBL:EID62357.1};
InterProA0A0F6MDW9 
PFAMA0A0F6MDW9 
ProdomA0A0F6MDW9 
UniProtKBA0A0G3K6G6SubName: Full=Putative L-arabinose transmembrane ABC transporter protein {ECO:0000313|EMBL:AKK48614.1};
InterProA0A0G3K6G6 
PFAMA0A0G3K6G6 
ProdomA0A0G3K6G6 
UniProtKBF5NVW0SubName: Full=L-arabinose transport system permease protein araH {ECO:0000313|EMBL:EGK37077.1};EC=3.6.3.17 {ECO:0000313|EMBL:EGK37077.1};
InterProF5NVW0 
PFAMF5NVW0 
ProdomF5NVW0 
UniProtKBI4UQ65SubName: Full=L-arabinose transporter permease protein;EC=3.6.3.17;
InterProI4UQ65 
PFAMI4UQ65 
ProdomI4UQ65