University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P33013.3
Original Database ID ref NP_416514.4
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation dacd_ecoli recname: full=d-alanyl-d-alanine
carboxypeptidase dacd; short=dd-carb
oxypeptidase; short=dd-peptidase;
altname: full=penicillin-binding
pr ...
Sequence Length 388

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region21-367
Protein Length388
Template PDB Code5fsrA
Template Region-13-346
Sequence Identity99%
E-Value0
GA3411
MPQS1.94183
z-DOPE-0.78
TSVMod MethodMSALL
TSVMod RMSD1.303
TSVMod NO350.953
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB5fsr
DBALI5fsrA 
JenaImageLibrary5fsr 
Target Sequence
UniProtKBI4QMH8SubName: Full=D-alanyl-D-alanine carboxypeptidase;
InterProI4QMH8 
PFAMI4QMH8 
ProdomI4QMH8 
UniProtKBA0A029KPT6SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:EZJ75094.1};EC=3.4.16.4 {ECO:0000313|EMBL:EZJ75094.1};
InterProA0A029KPT6 
PFAMA0A029KPT6 
ProdomA0A029KPT6 
UniProtKBF9R558SubName: Full=D-alanyl-D-alanine carboxypeptidase;EC=3.4.16.4;
InterProF9R558 
PFAMF9R558 
ProdomF9R558 
UniProtKBT9A3G5SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProT9A3G5 
PFAMT9A3G5 
ProdomT9A3G5 
UniProtKBT8YUI5SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProT8YUI5 
PFAMT8YUI5 
ProdomT8YUI5 
UniProtKBT6XF00SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProT6XF00 
PFAMT6XF00 
ProdomT6XF00 
UniProtKBT5S1E9SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProT5S1E9 
PFAMT5S1E9 
ProdomT5S1E9 
UniProtKBS1IHB8SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:EOW22873.1};
InterProS1IHB8 
PFAMS1IHB8 
ProdomS1IHB8 
UniProtKBS1EIU1SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:EOV78444.1};
InterProS1EIU1 
PFAMS1EIU1 
ProdomS1EIU1 
UniProtKBP33013RecName: Full=D-alanyl-D-alanine carboxypeptidase DacD;Short=DD-carboxypeptidase;Short=DD-peptidase;EC=3.4.16.4;AltName: Full=Penicillin-binding protein 6b;Short=PBP-6b;Flags: Precursor;
InterProP33013 
PFAMP33013 
ProdomP33013 
UniProtKBC9QSH9SubName: Full=D-alanyl-D-alanine carboxypeptidase;SubName: Full=Serine-type D-Ala-D-Ala carboxypeptidase;EC=3.4.16.4;Flags: Precursor;
InterProC9QSH9 
PFAMC9QSH9 
ProdomC9QSH9 
UniProtKBM2PJR9SubName: Full=D-alanyl-D-alanine carboxypeptidase;EC=3.4.16.4;
InterProM2PJR9 
PFAMM2PJR9 
ProdomM2PJR9 
UniProtKBL3CX71SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProL3CX71 
PFAML3CX71 
ProdomL3CX71 
UniProtKBA0A029MFF3SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:EZJ96334.1};EC=3.4.16.4 {ECO:0000313|EMBL:EZJ96334.1};
InterProA0A029MFF3 
PFAMA0A029MFF3 
ProdomA0A029MFF3 
UniProtKBA0A061KNA3SubName: Full=D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:AKO57542.1};EC=3.4.16.4 {ECO:0000313|EMBL:AKO57542.1};SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:CEE05
InterProA0A061KNA3 
PFAMA0A061KNA3 
ProdomA0A061KNA3 
UniProtKBK4V8Q6SubName: Full=D-alanyl-D-alanine carboxypeptidase;
InterProK4V8Q6 
PFAMK4V8Q6 
ProdomK4V8Q6 
UniProtKBI4P0C3SubName: Full=D-alanyl-D-alanine carboxypeptidase;
InterProI4P0C3 
PFAMI4P0C3 
ProdomI4P0C3 
UniProtKBB1X6U6SubName: Full=D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 6b);
InterProB1X6U6 
PFAMB1X6U6 
ProdomB1X6U6 
UniProtKBC4ZS98SubName: Full=D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 6b);
InterProC4ZS98 
PFAMC4ZS98 
ProdomC4ZS98 
UniProtKBF4M0R8SubName: Full=D-alanyl-D-alanine carboxypeptidase DacD;
InterProF4M0R8 
PFAMF4M0R8 
ProdomF4M0R8 
UniProtKBF7MY00SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProF7MY00 
PFAMF7MY00 
ProdomF7MY00 
UniProtKBA0A0G3KAJ8SubName: Full=D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:AKK48721.1};
InterProA0A0G3KAJ8 
PFAMA0A0G3KAJ8 
ProdomA0A0G3KAJ8 
UniProtKBA0A0G3I3L6SubName: Full=D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 6b) protein {ECO:0000313|EMBL:AKK18012.1};
InterProA0A0G3I3L6 
PFAMA0A0G3I3L6 
ProdomA0A0G3I3L6 
UniProtKBA0A073TIG7SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:KEL28694.1};EC=3.4.16.4 {ECO:0000313|EMBL:KEL28694.1};
InterProA0A073TIG7 
PFAMA0A073TIG7 
ProdomA0A073TIG7 
UniProtKBA0A071AUT1SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:KDY59368.1};EC=3.4.16.4 {ECO:0000313|EMBL:KDY59368.1};
InterProA0A071AUT1 
PFAMA0A071AUT1 
ProdomA0A071AUT1 
UniProtKBA0A069ZEC1SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:KDU55766.1};EC=3.4.16.4 {ECO:0000313|EMBL:KDU55766.1};
InterProA0A069ZEC1 
PFAMA0A069ZEC1 
ProdomA0A069ZEC1 
UniProtKBA0A069XSP8SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:KDU33266.1};EC=3.4.16.4 {ECO:0000313|EMBL:KDU33266.1};
InterProA0A069XSP8 
PFAMA0A069XSP8 
ProdomA0A069XSP8 
UniProtKBG2F8P9SubName: Full=D-alanyl-D-alanine carboxypeptidase;EC=3.4.16.4;
InterProG2F8P9 
PFAMG2F8P9 
ProdomG2F8P9 
UniProtKBH0Q8N4SubName: Full=D-alanyl-D-alanine carboxypeptidase;
InterProH0Q8N4 
PFAMH0Q8N4 
ProdomH0Q8N4 
UniProtKBK4W341SubName: Full=D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EJE74762.1};
InterProK4W341 
PFAMK4W341 
ProdomK4W341 
UniProtKBH5PM32SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH5PM32 
PFAMH5PM32 
ProdomH5PM32 
UniProtKBA0A0E0U0G6SubName: Full=D-alanyl-D-alanine carboxypeptidase DacD {ECO:0000313|EMBL:AEE57127.1};
InterProA0A0E0U0G6 
PFAMA0A0E0U0G6 
ProdomA0A0E0U0G6 
UniProtKBH5Q2R6SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH5Q2R6 
PFAMH5Q2R6 
ProdomH5Q2R6 
UniProtKBT8DLV8SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProT8DLV8 
PFAMT8DLV8 
ProdomT8DLV8 
UniProtKBH5QGB0SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH5QGB0 
PFAMH5QGB0 
ProdomH5QGB0 
UniProtKBL2YG40SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProL2YG40 
PFAML2YG40 
ProdomL2YG40 
UniProtKBH5RBV1SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH5RBV1 
PFAMH5RBV1 
ProdomH5RBV1 
UniProtKBT6ZHU8SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProT6ZHU8 
PFAMT6ZHU8 
ProdomT6ZHU8 
UniProtKBM5I212SubName: Full=D-alanyl-D-alanine carboxypeptidase;EC=3.4.16.4;
InterProM5I212 
PFAMM5I212 
ProdomM5I212 
UniProtKBL4XWF4SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProL4XWF4 
PFAML4XWF4 
ProdomL4XWF4 
UniProtKBL3UG72SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProL3UG72 
PFAML3UG72 
ProdomL3UG72 
UniProtKBH4ZY93SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b {ECO:0000313|EMBL:EHW16498.1};EC=3.4.16.4 {ECO:0000313|EMBL:EHW16498.1};
InterProH4ZY93 
PFAMH4ZY93 
ProdomH4ZY93 
UniProtKBH4WD21SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH4WD21 
PFAMH4WD21 
ProdomH4WD21 
UniProtKBV6FM31SubName: Full=D-alanyl-D-alanine carboxypeptidase DacD {ECO:0000313|EMBL:EIH14827.1};EC=3.4.16.4 {ECO:0000313|EMBL:EIH14827.1};
InterProV6FM31 
PFAMV6FM31 
ProdomV6FM31 
UniProtKBT9CZH4SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:EQY20429.1};
InterProT9CZH4 
PFAMT9CZH4 
ProdomT9CZH4 
UniProtKBT8GE58SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProT8GE58 
PFAMT8GE58 
ProdomT8GE58 
UniProtKBS1JUX2SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProS1JUX2 
PFAMS1JUX2 
ProdomS1JUX2 
UniProtKBS1D564SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:EOV61271.1};
InterProS1D564 
PFAMS1D564 
ProdomS1D564 
UniProtKBH4VI41SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;EC=3.4.16.4;
InterProH4VI41 
PFAMH4VI41 
ProdomH4VI41 
UniProtKBH4V2S2SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b {ECO:0000313|EMBL:EHV56002.1};EC=3.4.16.4 {ECO:0000313|EMBL:EHV56002.1};
InterProH4V2S2 
PFAMH4V2S2 
ProdomH4V2S2 
UniProtKBC9QSH9SubName: Full=D-alanyl-D-alanine carboxypeptidase;SubName: Full=Serine-type D-Ala-D-Ala carboxypeptidase;EC=3.4.16.4;Flags: Precursor;
InterProC9QSH9 
PFAMC9QSH9 
ProdomC9QSH9 
UniProtKBC4ZS98SubName: Full=D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 6b);
InterProC4ZS98 
PFAMC4ZS98 
ProdomC4ZS98 
UniProtKBH4VI41SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;EC=3.4.16.4;
InterProH4VI41 
PFAMH4VI41 
ProdomH4VI41 
UniProtKBB1X6U6SubName: Full=D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 6b);
InterProB1X6U6 
PFAMB1X6U6 
ProdomB1X6U6 
UniProtKBI4P0C3SubName: Full=D-alanyl-D-alanine carboxypeptidase;
InterProI4P0C3 
PFAMI4P0C3 
ProdomI4P0C3 
UniProtKBH4V2S2SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH4V2S2 
PFAMH4V2S2 
ProdomH4V2S2 
UniProtKBG2F8P9SubName: Full=D-alanyl-D-alanine carboxypeptidase;EC=3.4.16.4;
InterProG2F8P9 
PFAMG2F8P9 
ProdomG2F8P9 
UniProtKBF4M0R8SubName: Full=D-alanyl-D-alanine carboxypeptidase DacD;
InterProF4M0R8 
PFAMF4M0R8 
ProdomF4M0R8 
UniProtKBF7MY00SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
InterProF7MY00 
PFAMF7MY00 
ProdomF7MY00 
UniProtKBH5RBV1SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH5RBV1 
PFAMH5RBV1 
ProdomH5RBV1 
UniProtKBH4ZY93SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH4ZY93 
PFAMH4ZY93 
ProdomH4ZY93 
UniProtKBF9R558SubName: Full=D-alanyl-D-alanine carboxypeptidase;EC=3.4.16.4;
InterProF9R558 
PFAMF9R558 
ProdomF9R558 
UniProtKBH5QGB0SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH5QGB0 
PFAMH5QGB0 
ProdomH5QGB0 
UniProtKBH5Q2R6SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH5Q2R6 
PFAMH5Q2R6 
ProdomH5Q2R6 
UniProtKBH5PM32SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH5PM32 
PFAMH5PM32 
ProdomH5PM32 
UniProtKBH0Q8N4SubName: Full=D-alanyl-D-alanine carboxypeptidase;
InterProH0Q8N4 
PFAMH0Q8N4 
ProdomH0Q8N4 
UniProtKBI4QMH8SubName: Full=D-alanyl-D-alanine carboxypeptidase;
InterProI4QMH8 
PFAMI4QMH8 
ProdomI4QMH8 
UniProtKBH4WD21SubName: Full=DD-carboxypeptidase, penicillin-binding protein 6b;EC=3.4.16.4;
InterProH4WD21 
PFAMH4WD21 
ProdomH4WD21 
UniProtKBA0A1X3INV6Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000256|ARBA:ARBA00012448}EC=3.4.16.4 {ECO:0000256|ARBA:ARBA00012448}
InterProA0A1X3INV6 
PFAMA0A1X3INV6 
ProdomA0A1X3INV6 
UniProtKBA0A5Q3TB09Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000256|ARBA:ARBA00012448}EC=3.4.16.4 {ECO:0000256|ARBA:ARBA00012448}
InterProA0A5Q3TB09 
PFAMA0A5Q3TB09 
ProdomA0A5Q3TB09 
UniProtKBA0A7L7X4J4SubName: Full=Serine-type D-Ala-D-Ala carboxypeptidase DacD {ECO:0000313|EMBL:QOD17877.1}EC=3.4.16.4 {ECO:0000313|EMBL:QOD17877.1}
InterProA0A7L7X4J4 
PFAMA0A7L7X4J4 
ProdomA0A7L7X4J4 
UniProtKBA0A7U8XJU3SubName: Full=Serine-type D-Ala-D-Ala carboxypeptidase DacD {ECO:0000313|EMBL:EFB5450240.1}EC=3.4.16.4 {ECO:0000313|EMBL:EFB5450240.1}
InterProA0A7U8XJU3 
PFAMA0A7U8XJU3 
ProdomA0A7U8XJU3 
UniProtKBA0A7W4KLH3SubName: Full=Serine-type D-Ala-D-Ala carboxypeptidase DacD {ECO:0000313|EMBL:MBB2252812.1}EC=3.4.16.4 {ECO:0000313|EMBL:MBB2252812.1}
InterProA0A7W4KLH3 
PFAMA0A7W4KLH3 
ProdomA0A7W4KLH3 
UniProtKBA0A829AJT9SubName: Full=D-alanyl-D-alanine carboxypeptidase dacD {ECO:0000313|EMBL:ELF08457.1}
InterProA0A829AJT9 
PFAMA0A829AJT9 
ProdomA0A829AJT9 
UniProtKBA0A8A5IIA3SubName: Full=Serine-type D-Ala-D-Ala carboxypeptidase DacD {ECO:0000313|EMBL:QTF42425.1}EC=3.4.16.4 {ECO:0000313|EMBL:QTF42425.1}
InterProA0A8A5IIA3 
PFAMA0A8A5IIA3 
ProdomA0A8A5IIA3 
UniProtKBA0A8F2TPX4SubName: Full=Serine-type D-Ala-D-Ala carboxypeptidase DacD {ECO:0000313|EMBL:QWV75280.1}EC=3.4.16.4 {ECO:0000313|EMBL:QWV75280.1}
InterProA0A8F2TPX4 
PFAMA0A8F2TPX4 
ProdomA0A8F2TPX4 
UniProtKBA0A8F8DIS8SubName: Full=Serine-type D-Ala-D-Ala carboxypeptidase DacD {ECO:0000313|EMBL:QXZ38523.1}EC=3.4.16.4 {ECO:0000313|EMBL:QXZ38523.1}
InterProA0A8F8DIS8 
PFAMA0A8F8DIS8 
ProdomA0A8F8DIS8 
UniProtKBA0A8F9HDU9SubName: Full=Serine-type D-Ala-D-Ala carboxypeptidase DacD {ECO:0000313|EMBL:QYE27303.1}EC=3.4.16.4 {ECO:0000313|EMBL:QYE27303.1}
InterProA0A8F9HDU9 
PFAMA0A8F9HDU9 
ProdomA0A8F9HDU9 
UniProtKBP33013.3DACD_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 6b; Short=PBP-6b; Flags: Precursor
InterProP33013.3 
PFAMP33013.3 
ProdomP33013.3 
UniProtKBP33013RecName: Full=D-alanyl-D-alanine carboxypeptidase DacD;Short=DD-carboxypeptidase;Short=DD-peptidase;EC=3.4.16.4;AltName: Full=Penicillin-binding protein 6b;Short=PBP-6b;Flags: Precursor;
InterProP33013 
PFAMP33013 
ProdomP33013 
RefSeqYP_002926996.1 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli BW2952]
RefSeqNP_416514.4 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_001730960.1 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli str. K-12 substr. DH10B]
RefSeqAP_002610.1 D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12 substr. W3110]
GenPept687672859DD-carboxypeptidase, penicillin-binding protein 6b
GenPept682119501D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
GenPept557272311D-alanyl-D-alanine carboxypeptidase
GenPept315136643D-alanyl-D-alanine carboxypeptidase
GenPept260448889Serine-type D-Ala-D-Ala carboxypeptidase
GenPept808700732D-alanyl-D-alanine carboxypeptidase
GenPept808705108D-alanyl-D-alanine carboxypeptidase
GenPept808709470D-alanyl-D-alanine carboxypeptidase
GenPept817579418D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 6b
GenPept817575276D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 6b
GenPept808735346D-alanyl-D-alanine carboxypeptidase
GenPept808730929D-alanyl-D-alanine carboxypeptidase
GenPept808722611D-alanyl-D-alanine carboxypeptidase
GenPept808718241D-alanyl-D-alanine carboxypeptidase
GenPept808713829D-alanyl-D-alanine carboxypeptidase
GenPept664684320D-alanyl-D-alanine carboxypeptidase