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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link O75533.2
Original Database ID P68254
Organism Homo sapiens
Annotation sf3b1_human recname: full=splicing
factor 3b subunit 1; altname:
full=pre-mrna-s plicing factor
sf3b 155 kda subunit; short=sf3b155;
altname: full=spl ...
Sequence Length 1304

Dataset Information:

The newest dataset for this sequence was created on 2012-11-07. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region497-1279
Protein Length1304
Template PDB Code4adyA
Template Region6-708
Sequence Identity13%
E-Value0
GA3411
MPQS0.58796
z-DOPE0.75
TSVMod MethodMSALL
TSVMod RMSD6.482
TSVMod NO350.608
DatasetMW-update_D95
ModPipe VersionSVN.r1340:1348M
Model Date2012-11-07

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Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-Mut Somatic mutation found in advanced pancreatic tumor for NP_036565 K700E
LS-Mut Somatic mutation found in advanced pancreatic tumor for NP_036565 Q699H
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB4ady
DBALI4adyA 
JenaImageLibrary4ady 
Target Sequence
UniProtKBO75533RecName: Full=Splicing factor 3B subunit 1;AltName: Full=Pre-mRNA-splicing factor SF3b 155 kDa subunit;Short=SF3b155;AltName: Full=Spliceosome-associated protein 155;Short=SAP 155;
InterProO75533 
PFAMO75533 
ProdomO75533 
UniProtKBO75533.2SF3B1_HUMAN RecName: Full=Splicing factor 3B subunit 1; AltName: Full=Pre-mRNA-splicing factor SF3b 155 kDa subunit; Short=SF3b155; AltName: Full=Spliceosome-associated protein 155; Short=SAP 155
InterProO75533.2 
PFAMO75533.2 
ProdomO75533.2 
GenPept15214275SF3B1_HUMAN RecName: Full=Splicing factor 3B subunit 1; AltName: Full=Pre-mRNA-splicing factor SF3b 155 kDa subunit; Short=SF3b155; AltName: Full=Spliceosome-associated protein 155; Short=SAP 155
GenPept314880827Sequence 1069 from patent US 7842467
GenPept4033735spliceosomal protein SAP 155
GenPept6912654 splicing factor 3b, subunit 1, 155kD; spliceosome-associated factor 155 [Homo sapiens]
GenBankAAC97189.1 spliceosomal protein SAP 155 [Homo sapiens]
UCSCGenomeBrowserO75533