University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P77215
Original Database ID sp C4ZU89
Organism Escherichia coli, Shigella boydii, etc.
Annotation recname: full=l-rhamnonate dehydratase;short=rhamd;ec=4.2.1.90;
Sequence Length 405

Dataset Information:

The newest dataset for this sequence was created on 2011-04-22. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region5-405
Protein Length405
Template PDB Code3ekgA
Template Region3-396
Sequence Identity64%
E-Value0
GA3411
MPQS1.82812
z-DOPE-1.26
Datasetecolb
ModPipe VersionSVN.r1278
Model Date2010-02-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3ekgcrystal structure of l-rhamnonate dehydratase from azotobacter vinelandii complexed with mg and l-tartrate
DBALI3ekgA 
JenaImageLibrary3ekg 
Target Sequence
SFLD417975441Structure Function Linkage Database entry: Member of the Enolase superfamily.
UniProtKBA0A0H3XAX9SubName: Full=Enolase {ECO:0000313|EMBL:AKM35821.1};
InterProA0A0H3XAX9 
PFAMA0A0H3XAX9 
ProdomA0A0H3XAX9 
UniProtKBE3PDU9RecName: Full=L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288};Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288};EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288};
InterProE3PDU9 
PFAME3PDU9 
ProdomE3PDU9 
UniProtKBE1HSU1RecName: Full=L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288};Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288};EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288};
InterProE1HSU1 
PFAME1HSU1 
ProdomE1HSU1 
UniProtKBD7ZXU5RecName: Full=L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288};Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288};EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288};
InterProD7ZXU5 
PFAMD7ZXU5 
ProdomD7ZXU5 
UniProtKBC6VH14RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProC6VH14 
PFAMC6VH14 
ProdomC6VH14 
UniProtKBC6ULQ8RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProC6ULQ8 
PFAMC6ULQ8 
ProdomC6ULQ8 
UniProtKBC5W6Y5RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProC5W6Y5 
PFAMC5W6Y5 
ProdomC5W6Y5 
UniProtKBB2N5M4RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProB2N5M4 
PFAMB2N5M4 
ProdomB2N5M4 
UniProtKBB1X8W0RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProB1X8W0 
PFAMB1X8W0 
ProdomB1X8W0 
UniProtKBB1IXU0RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProB1IXU0 
PFAMB1IXU0 
ProdomB1IXU0 
UniProtKBA0A024L1E7RecName: Full=L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288};Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288};EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288};
InterProA0A024L1E7 
PFAMA0A024L1E7 
ProdomA0A024L1E7 
UniProtKBA0A0E1SW46RecName: Full=L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288};Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288};EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288};
InterProA0A0E1SW46 
PFAMA0A0E1SW46 
ProdomA0A0E1SW46 
UniProtKBH0QAQ5RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProH0QAQ5 
PFAMH0QAQ5 
ProdomH0QAQ5 
UniProtKBF4SGH6RecName: Full=L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288};Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288};EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288};
InterProF4SGH6 
PFAMF4SGH6 
ProdomF4SGH6 
UniProtKBH9UUJ2RecName: Full=L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288};Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288};EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288};
InterProH9UUJ2 
PFAMH9UUJ2 
ProdomH9UUJ2 
UniProtKBI0ZUH3RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProI0ZUH3 
PFAMI0ZUH3 
ProdomI0ZUH3 
UniProtKBG2EZQ0RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProG2EZQ0 
PFAMG2EZQ0 
ProdomG2EZQ0 
UniProtKBF9R4W1RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProF9R4W1 
PFAMF9R4W1 
ProdomF9R4W1 
UniProtKBI2I7U6RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProI2I7U6 
PFAMI2I7U6 
ProdomI2I7U6 
UniProtKBW0FTS6SubName: Full=Mandelate racemase / muconate lactonizing enzyme protein {ECO:0000313|EMBL:AHF26994.1};
InterProW0FTS6 
PFAMW0FTS6 
ProdomW0FTS6 
UniProtKBC4ZU89RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProC4ZU89 
PFAMC4ZU89 
ProdomC4ZU89 
UniProtKBI0ZUH3SubName: Full=Mandelate racemase / muconate lactonizing enzyme protein;
InterProI0ZUH3 
PFAMI0ZUH3 
ProdomI0ZUH3 
UniProtKBB1X8W0SubName: Full=Predicted enolase;
InterProB1X8W0 
PFAMB1X8W0 
ProdomB1X8W0 
UniProtKBE3PDU9RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProE3PDU9 
PFAME3PDU9 
ProdomE3PDU9 
UniProtKBA2UDC9Mandelate racemase/muconate lactonizing enzyme, C-terminal domainprotein.
InterProA2UDC9 
PFAMA2UDC9 
ProdomA2UDC9 
UniProtKBA0A8E2P397SubName: Full=L-rhamnonate dehydratase {ECO:0000313|EMBL:PAY98238.1}
InterProA0A8E2P397 
PFAMA0A8E2P397 
ProdomA0A8E2P397 
UniProtKBA0A854NTM3SubName: Full=L-rhamnonate dehydratase {ECO:0000313|EMBL:OWR18113.1}
InterProA0A854NTM3 
PFAMA0A854NTM3 
ProdomA0A854NTM3 
UniProtKBI2I7U6SubName: Full=L-rhamnonate dehydratase;
InterProI2I7U6 
PFAMI2I7U6 
ProdomI2I7U6 
UniProtKBF4SGH6RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProF4SGH6 
PFAMF4SGH6 
ProdomF4SGH6 
UniProtKBB2N5M4RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProB2N5M4 
PFAMB2N5M4 
ProdomB2N5M4 
UniProtKBC4ZU89SubName: Full=Predicted enolase;
InterProC4ZU89 
PFAMC4ZU89 
ProdomC4ZU89 
UniProtKBF9R4W1RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProF9R4W1 
PFAMF9R4W1 
ProdomF9R4W1 
UniProtKBE1HSU1RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProE1HSU1 
PFAME1HSU1 
ProdomE1HSU1 
UniProtKBD7ZXU5RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProD7ZXU5 
PFAMD7ZXU5 
ProdomD7ZXU5 
UniProtKBG2EZQ0RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProG2EZQ0 
PFAMG2EZQ0 
ProdomG2EZQ0 
UniProtKBC6VH14RecName: Full=L-rhamnonate dehydratase 2;Short=RhamD 2;EC=4.2.1.90;
InterProC6VH14 
PFAMC6VH14 
ProdomC6VH14 
UniProtKBH0QAQ5RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProH0QAQ5 
PFAMH0QAQ5 
ProdomH0QAQ5 
UniProtKBC6ULQ8RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProC6ULQ8 
PFAMC6ULQ8 
ProdomC6ULQ8 
UniProtKBH9UUJ2SubName: Full=Uncharacterized protein;
InterProH9UUJ2 
PFAMH9UUJ2 
ProdomH9UUJ2 
UniProtKBC5W6Y5RecName: Full=L-rhamnonate dehydratase 2;Short=RhamD 2;EC=4.2.1.90;
InterProC5W6Y5 
PFAMC5W6Y5 
ProdomC5W6Y5 
UniProtKBA0A5E8FNV0L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288}Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288}EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288}
InterProA0A5E8FNV0 
PFAMA0A5E8FNV0 
ProdomA0A5E8FNV0 
UniProtKBA0A1X3JEC6L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288}Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288}EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288}
InterProA0A1X3JEC6 
PFAMA0A1X3JEC6 
ProdomA0A1X3JEC6 
UniProtKBC4ZU89RecName: Full=L-rhamnonate dehydratase {ECO:0000255|HAMAP-Rule:MF_01288};Short=RhamD {ECO:0000255|HAMAP-Rule:MF_01288};EC=4.2.1.90 {ECO:0000255|HAMAP-Rule:MF_01288};
InterProC4ZU89 
PFAMC4ZU89 
ProdomC4ZU89 
UniProtKBB1IXU0.2RHAMD_ECOLC RecName: Full=L-rhamnonate dehydratase; Short=RhamD
InterProB1IXU0.2 
PFAMB1IXU0.2 
ProdomB1IXU0.2 
UniProtKBB1IXU0RecName: Full=L-rhamnonate dehydratase {ECO:0000255|HAMAP-Rule:MF_01288};Short=RhamD {ECO:0000255|HAMAP-Rule:MF_01288};EC=4.2.1.90 {ECO:0000255|HAMAP-Rule:MF_01288};
InterProB1IXU0 
PFAMB1IXU0 
ProdomB1IXU0 
UniProtKBP77215RecName: Full=L-rhamnonate dehydratase;Short=RhamD;EC=4.2.1.90;
InterProP77215 
PFAMP77215 
ProdomP77215 
UniProtKBP77215.1RHAMD_ECOLI RecName: Full=L-rhamnonate dehydratase; Short=RhamD
InterProP77215.1 
PFAMP77215.1 
ProdomP77215.1 
UniProtKBB1X8W0RecName: Full=L-rhamnonate dehydratase {ECO:0000255|HAMAP-Rule:MF_01288};Short=RhamD {ECO:0000255|HAMAP-Rule:MF_01288};EC=4.2.1.90 {ECO:0000255|HAMAP-Rule:MF_01288};
InterProB1X8W0 
PFAMB1X8W0 
ProdomB1X8W0 
UniProtKBC4ZU89.1RHAMD_ECOBW RecName: Full=L-rhamnonate dehydratase; Short=RhamD
InterProC4ZU89.1 
PFAMC4ZU89.1 
ProdomC4ZU89.1 
UniProtKBB1X8W0.1RHAMD_ECODH RecName: Full=L-rhamnonate dehydratase; Short=RhamD
InterProB1X8W0.1 
PFAMB1X8W0.1 
ProdomB1X8W0.1 
RefSeqZP_01698369.1 Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein [Escherichia coli B]
RefSeqYP_002927217.1 putative enolase [Escherichia coli BW2952]
RefSeqYP_002999912.1 hypothetical protein B21_02132 [Escherichia coli BL21]
RefSeqAP_002844.1 predicted enolase [Escherichia coli str. K-12 substr. W3110]
RefSeqZP_07146732.1 mandelate racemase / muconate lactonizing enzyme protein [Escherichia coli MS 187-1]
RefSeqZP_03000751.1 mandelate racemase/muconate lactonizing enzyme [Escherichia coli 53638]
RefSeqZP_00735225.1 COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Escherichia coli 53638]
RefSeqYP_003045366.1 putative enolase [Escherichia coli B str. REL606]
RefSeqYP_003054767.1 predicted enolase [Escherichia coli BL21(DE3)]
RefSeqZP_07247454.1 mandelate racemase / muconate lactonizing enzyme protein [Escherichia coli MS 146-1]
RefSeqNP_416750.1 predicted enolase [Escherichia coli K12]
RefSeqYP_001731185.1 enolase [Escherichia coli str. K-12 substr. DH10B]
GenPept251785608 hypothetical protein B21_02132 [Escherichia coli BL21]
GenPept188493481 mandelate racemase/muconate lactonizing enzyme [Escherichia coli 53638]
GenPept359332590predicted enolase
GenPept242377881L-rhamnonate dehydratase
GenPept238862347predicted enolase
GenPept124501887 Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein [Escherichia coli B]
GenPept209573754RHAMD_ECOLC RecName: Full=L-rhamnonate dehydratase; Short=RhamD
GenPept209573533RHAMD_ECODH RecName: Full=L-rhamnonate dehydratase; Short=RhamD
GenPept169889700predicted enolase
GenPept188488680 mandelate racemase/muconate lactonizing enzyme [Escherichia coli 53638]
GenPept238901421 putative enolase [Escherichia coli BW2952]
GenPept124526416 Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein [Escherichia coli B]
GenPept1799600predicted enolase
GenPept16130182 (NC_000913) putative racemase [Escherichia coli K12]
GenPept170081865 enolase [Escherichia coli str. K-12 substr. DH10B]
GenPept1788580predicted enolase
GenPept253974159predicted enolase
GenPept557272531putative enolase
GenPept571053502mandelate racemase / muconate lactonizing enzyme protein
GenPept6226793RHAMD_ECOLI RecName: Full=L-rhamnonate dehydratase; Short=RhamD
GenPept665442104L-rhamnonate dehydratase
GenPept687673095L-rhamnonate dehydratase
GenPept687677388L-rhamnonate dehydratase
GenPept7466305E64995 hypothetical protein b2247 - Escherichia coli (strain K-12)
GenPept75512723 COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Escherichia coli 53638]
GenPept383103676hypothetical protein P12B_c2341
GenPept331039681putative racemase
GenPept309702557predicted mandelate racemase
GenPept253978326predicted enolase
GenPept254162258 putative enolase [Escherichia coli B str. REL606]
GenPept254289019 predicted enolase [Escherichia coli BL21(DE3)]
GenPept259585602RHAMD_ECOBW RecName: Full=L-rhamnonate dehydratase; Short=RhamD
GenPept300460773 mandelate racemase / muconate lactonizing enzyme protein [Escherichia coli MS 187-1]
GenPept300931403 mandelate racemase / muconate lactonizing enzyme protein [Escherichia coli MS 187-1]
GenPept301074190 mandelate racemase / muconate lactonizing enzyme protein [Escherichia coli MS 146-1]
GenPept301647660 mandelate racemase / muconate lactonizing enzyme protein [Escherichia coli MS 146-1]
GenPept89109064 predicted enolase [Escherichia coli str. K-12 substr. W3110]
GenBankACT39830.1 predicted enolase [Escherichia coli B str. REL606]