University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P76102.1
Original Database ID tr C6UH59
Organism Escherichia coli, Shigella sp., etc.
Annotation ydcm_ecoli recname: full=uncharacterized
protein ydcm
Sequence Length 402

Dataset Information:

The newest dataset for this sequence was created on 2010-02-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region49-386
Protein Length402
Template PDB Code2vycA
Template Region398-755
Sequence Identity11%
E-Value0
GA3410.77
MPQS0.406996
z-DOPE1.57
Datasetecolb
ModPipe VersionSVN.r1278
Model Date2010-02-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2vyccrystal structure of acid induced arginine decarboxylase from e. coli
DBALI2vycA 
JenaImageLibrary2vyc 
Target Sequence
UniProtKBW8SZ71SubName: Full=Transposase, IS605 OrfB family {ECO:0000313|EMBL:CEE04844.1};EC=2.1.1.37 {ECO:0000313|EMBL:CEE04844.1};
InterProW8SZ71 
PFAMW8SZ71 
ProdomW8SZ71 
UniProtKBF9R2U7SubName: Full=Putative transposase;
InterProF9R2U7 
PFAMF9R2U7 
ProdomF9R2U7 
UniProtKBE2WUC5SubName: Full=Transposase, IS605 OrfB family;
InterProE2WUC5 
PFAME2WUC5 
ProdomE2WUC5 
UniProtKBC6UH59SubName: Full=Predicted transposase;
InterProC6UH59 
PFAMC6UH59 
ProdomC6UH59 
UniProtKBA0A080IFH1SubName: Full=Transposase, IS605 OrfB family {ECO:0000313|EMBL:KEO25608.1};
InterProA0A080IFH1 
PFAMA0A080IFH1 
ProdomA0A080IFH1 
UniProtKBC6EET1SubName: Full=Transposase, IS605 OrfB family {ECO:0000313|EMBL:ACT29239.1};
InterProC6EET1 
PFAMC6EET1 
ProdomC6EET1 
UniProtKBA0A074IG02SubName: Full=Transposase, IS605 OrfB family {ECO:0000313|EMBL:KEN99479.1};
InterProA0A074IG02 
PFAMA0A074IG02 
ProdomA0A074IG02 
UniProtKBC5W3M0SubName: Full=Transposase, IS605 OrfB family {ECO:0000313|EMBL:ACT29239.1};
InterProC5W3M0 
PFAMC5W3M0 
ProdomC5W3M0 
UniProtKBC4ZVH1SubName: Full=Predicted transposase;
InterProC4ZVH1 
PFAMC4ZVH1 
ProdomC4ZVH1 
UniProtKBB3XAJ3SubName: Full=IS605 family transposase orfB;
InterProB3XAJ3 
PFAMB3XAJ3 
ProdomB3XAJ3 
UniProtKBG2AUD2SubName: Full=Transposase, IS605 OrfB family;
InterProG2AUD2 
PFAMG2AUD2 
ProdomG2AUD2 
UniProtKBB1XDE3SubName: Full=Predicted transposase;
InterProB1XDE3 
PFAMB1XDE3 
ProdomB1XDE3 
UniProtKBM2NWB7SubName: Full=Transposase;
InterProM2NWB7 
PFAMM2NWB7 
ProdomM2NWB7 
UniProtKBI2HZH7SubName: Full=Putative transposase;
InterProI2HZH7 
PFAMI2HZH7 
ProdomI2HZH7 
UniProtKBH0QCN3SubName: Full=Predicted transposase;
InterProH0QCN3 
PFAMH0QCN3 
ProdomH0QCN3 
UniProtKBG2F6V4SubName: Full=Putative transposase;
InterProG2F6V4 
PFAMG2F6V4 
ProdomG2F6V4 
UniProtKBA0A140NBX7SubName: Full=IS200/IS605 family element transposase accessory protein TnpB {ECO:0000313|EMBL:QJZ12111.1}SubName: Full=Transposase, IS605 OrfB family {ECO:0000313|EMBL:ACT29239.1}
InterProA0A140NBX7 
PFAMA0A140NBX7 
ProdomA0A140NBX7 
UniProtKBA0A8F9HZI3SubName: Full=Transposase {ECO:0000313|EMBL:QYE37346.1}
InterProA0A8F9HZI3 
PFAMA0A8F9HZI3 
ProdomA0A8F9HZI3 
UniProtKBB1XDE3SubName: Full=Predicted transposase;
InterProB1XDE3 
PFAMB1XDE3 
ProdomB1XDE3 
UniProtKBA0A8F9H7G8SubName: Full=Transposase {ECO:0000313|EMBL:QYE23859.1}
InterProA0A8F9H7G8 
PFAMA0A8F9H7G8 
ProdomA0A8F9H7G8 
UniProtKBA0A5Q3T8J8SubName: Full=IS200/IS605 family element transposase accessory protein TnpB {ECO:0000313|EMBL:QGL40818.1}
InterProA0A5Q3T8J8 
PFAMA0A5Q3T8J8 
ProdomA0A5Q3T8J8 
UniProtKBA0A6M6P130SubName: Full=IS200/IS605 family element transposase accessory protein TnpB {ECO:0000313|EMBL:QJZ03843.1}
InterProA0A6M6P130 
PFAMA0A6M6P130 
ProdomA0A6M6P130 
UniProtKBA0A8F8GY25SubName: Full=Transposase {ECO:0000313|EMBL:QXZ35067.1}
InterProA0A8F8GY25 
PFAMA0A8F8GY25 
ProdomA0A8F8GY25 
UniProtKBA0A1V2FYI5SubName: Full=IS200/IS605 family element transposase accessory protein TnpB {ECO:0000313|EMBL:KAE9952320.1}SubName: Full=Transposase {ECO:0000313|EMBL:ONG27512.1}
InterProA0A1V2FYI5 
PFAMA0A1V2FYI5 
ProdomA0A1V2FYI5 
UniProtKBA0A8A5GV99SubName: Full=Transposase {ECO:0000313|EMBL:QTF22492.1}
InterProA0A8A5GV99 
PFAMA0A8A5GV99 
ProdomA0A8A5GV99 
UniProtKBA0A656P5B9SubName: Full=Transposase {ECO:0000313|EMBL:HAV85805.1}
InterProA0A656P5B9 
PFAMA0A656P5B9 
ProdomA0A656P5B9 
UniProtKBB3XAJ3SubName: Full=IS605 family transposase orfB;
InterProB3XAJ3 
PFAMB3XAJ3 
ProdomB3XAJ3 
UniProtKBI2HZH7SubName: Full=Putative transposase;
InterProI2HZH7 
PFAMI2HZH7 
ProdomI2HZH7 
UniProtKBH0QCN3SubName: Full=Predicted transposase;
InterProH0QCN3 
PFAMH0QCN3 
ProdomH0QCN3 
UniProtKBG2F6V4SubName: Full=Putative transposase;
InterProG2F6V4 
PFAMG2F6V4 
ProdomG2F6V4 
UniProtKBC5W3M0SubName: Full=Predicted transposase;SubName: Full=Transposase, IS605 OrfB family;
InterProC5W3M0 
PFAMC5W3M0 
ProdomC5W3M0 
UniProtKBG2AUD2SubName: Full=Transposase, IS605 OrfB family;
InterProG2AUD2 
PFAMG2AUD2 
ProdomG2AUD2 
UniProtKBF9R2U7SubName: Full=Putative transposase;
InterProF9R2U7 
PFAMF9R2U7 
ProdomF9R2U7 
UniProtKBE2WUC5SubName: Full=Transposase, IS605 OrfB family;
InterProE2WUC5 
PFAME2WUC5 
ProdomE2WUC5 
UniProtKBC6UH59SubName: Full=Predicted transposase;
InterProC6UH59 
PFAMC6UH59 
ProdomC6UH59 
UniProtKBC6EET1SubName: Full=Predicted transposase;SubName: Full=Transposase, IS605 OrfB family;
InterProC6EET1 
PFAMC6EET1 
ProdomC6EET1 
UniProtKBC4ZVH1SubName: Full=Predicted transposase;
InterProC4ZVH1 
PFAMC4ZVH1 
ProdomC4ZVH1 
UniProtKBP76102.1YDCM_ECOLI RecName: Full=Uncharacterized protein ydcM
InterProP76102.1 
PFAMP76102.1 
ProdomP76102.1 
UniProtKBP77144RecName: Full=Uncharacterized protein ydcM;
InterProP77144 
PFAMP77144 
ProdomP77144 
UniProtKBP76102RecName: Full=Uncharacterized protein ydcM;
InterProP76102 
PFAMP76102 
ProdomP76102 
RefSeqAP_002055.1 predicted transposase [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_001730426.1 transposase [Escherichia coli str. K-12 substr. DH10B]
RefSeqZP_03068598.1 IS605 family transposase orfB [Escherichia coli 101-1]
RefSeqYP_002999216.1 hypothetical protein B21_01400 [Escherichia coli BL21]
RefSeqYP_002926454.1 putative transposase [Escherichia coli BW2952]
RefSeqYP_003036424.1 transposase, IS605 OrfB family [Escherichia coli BL21-Gold(DE3)pLysS AG]
RefSeqYP_003044599.1 putative transposase [Escherichia coli B str. REL606]
RefSeqYP_003054044.1 predicted transposase [Escherichia coli BL21(DE3)]
RefSeqNP_415949.1 predicted transposase [Escherichia coli str. K-12 substr. MG1655]
GenPept20140523YDCM_ECOLI RecName: Full=Uncharacterized protein ydcM
GenPept238863251predicted transposase
GenPept238900658 putative transposase [Escherichia coli BW2952]
GenPept242377185predicted transposase
GenPept253324637transposase, IS605 OrfB family
GenPept194436497 IS605 family transposase orfB [Escherichia coli 101-1]
GenPept194424529 IS605 family transposase orfB [Escherichia coli 101-1]
GenPept1787702 predicted transposase [Escherichia coli str. K-12 substr. MG1655]
GenPept170081106 transposase [Escherichia coli str. K-12 substr. DH10B]
GenPept169888941predicted transposase
GenPept16129391 predicted transposase [Escherichia coli str. K-12 substr. MG1655]
GenPept687672310predicted transposase
GenPept251784912 hypothetical protein B21_01400 [Escherichia coli BL21]
GenPept253773593 transposase, IS605 OrfB family [Escherichia coli BL21-Gold(DE3)pLysS AG]
GenPept253973392predicted transposase
GenPept253977603predicted transposase
GenPept7449753C64895 hypothetical protein b1432 - Escherichia coli
GenPept687676585predicted transposase
GenPept89108275 predicted transposase [Escherichia coli str. K-12 substr. W3110]
GenPept664683776transposase
GenPept595595376transposase
GenPept595590777transposase
GenPept595587465transposase
GenPept557271769putative transposase
GenPept359331962predicted transposase
GenPept254288296 predicted transposase [Escherichia coli BL21(DE3)]
GenPept254161491 putative transposase [Escherichia coli B str. REL606]
GenPept85674960predicted transposase
GenBankACT43273.1 predicted transposase [Escherichia coli BL21(DE3)]
GenBankACT39063.1 predicted transposase [Escherichia coli B str. REL606]
GenBankAAC74514.1 predicted transposase [Escherichia coli str. K-12 substr. MG1655]
GenBankACB02648.1 predicted transposase [Escherichia coli str. K-12 substr. DH10B]
GenBankACT29239.1 transposase, IS605 OrfB family [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
GenBankEDX40515.1 IS605 family transposase orfB [Escherichia coli 101-1]
GenBankACR65249.1 predicted transposase [Escherichia coli BW2952]
EMBLCAQ31917.1