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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link P76628
Original Database ID UP P76628
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation from bases 2796594 to 2807377
(section 242 of 400) of the completede
genome (s ection 242 of 400)
Sequence Length 88

Dataset Information:

The newest dataset for this sequence was created on 2014-01-02. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region1-88
Protein Length88
Template PDB Code2prxA
Template Region44-140
Sequence Identity30%
E-Value0.81
GA3410.32
MPQS0.9376
z-DOPE1.97
TSVMod MethodMSALL
TSVMod RMSD14.484
TSVMod NO350.05
DatasetMW-EFI_update_D22
ModPipe VersionSVN.r1515M
Model Date2014-01-02

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2prxcrystal structure of thioesterase superfamily protein (zp_00837258.1) from shewanella loihica pv-4 at 1.65 a resolution
DBALI2prxA 
CATH3.10.129.10 Domain: 2prxA00 Thiol Ester Dehydrase; Chain A (55%)
JenaImageLibrary2prx 
Target Sequence
UniProtKBF9QWN5SubName: Full=Permease;
InterProF9QWN5 
PFAMF9QWN5 
ProdomF9QWN5 
UniProtKBE6P5H2SubName: Full=Transporter ygaY;
InterProE6P5H2 
PFAME6P5H2 
ProdomE6P5H2 
UniProtKBG2EZX7SubName: Full=Permease;
InterProG2EZX7 
PFAMG2EZX7 
ProdomG2EZX7 
UniProtKBA0A090HRL0SubName: Full=Permease domain protein {ECO:0000313|EMBL:CEE08676.1};SubName: Full=Putative uncharacterized transporter ygaY {ECO:0000313|EMBL:KGM70862.1};
InterProA0A090HRL0 
PFAMA0A090HRL0 
ProdomA0A090HRL0 
UniProtKBH0Q991SubName: Full=Predicted transporter;
InterProH0Q991 
PFAMH0Q991 
ProdomH0Q991 
UniProtKBH4FHN2SubName: Full=Permease;
InterProH4FHN2 
PFAMH4FHN2 
ProdomH4FHN2 
UniProtKBI0ZWI9SubName: Full=Putative transport protein;
InterProI0ZWI9 
PFAMI0ZWI9 
ProdomI0ZWI9 
UniProtKBM2NJQ0SubName: Full=Putative transport protein;
InterProM2NJQ0 
PFAMM2NJQ0 
ProdomM2NJQ0 
UniProtKBH4FHN2SubName: Full=Permease;
InterProH4FHN2 
PFAMH4FHN2 
ProdomH4FHN2 
UniProtKBI0ZWI9SubName: Full=Putative transport protein;
InterProI0ZWI9 
PFAMI0ZWI9 
ProdomI0ZWI9 
UniProtKBH0Q991SubName: Full=Predicted transporter;
InterProH0Q991 
PFAMH0Q991 
ProdomH0Q991 
UniProtKBP76628FROM BASES 2796594 TO 2807377 (SECTION 242 OF 400) OF THE COMPLETEDE GENOME (SECTION 242 OF 400)
InterProP76628 
PFAMP76628 
ProdomP76628 
UniProtKBG2EZX7SubName: Full=Permease;
InterProG2EZX7 
PFAMG2EZX7 
ProdomG2EZX7 
UniProtKBQ2MAC3Predicted transporter
InterProQ2MAC3 
PFAMQ2MAC3 
ProdomQ2MAC3 
UniProtKBF9QWN5SubName: Full=Permease;
InterProF9QWN5 
PFAMF9QWN5 
ProdomF9QWN5 
UniProtKBE6P5H2SubName: Full=Transporter ygaY;
InterProE6P5H2 
PFAME6P5H2 
ProdomE6P5H2 
RefSeqAP_003253.1 predicted transporter [Escherichia coli str. K-12 substr. W3110]
GenPept315137293transporter ygaY
GenPept359332943predicted transporter
GenPept687673513predicted transporter
GenPept687677800predicted transporter
GenPept7466429A65048 hypothetical protein b2680 - Escherichia coli (strain K-12)
GenPept85675521predicted transporter
GenPept89109473 predicted transporter [Escherichia coli str. K-12 substr. W3110]
GenPept932860748MFS permease protein
GenPept1789035predicted transporter