University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A0E1LAY0
Original Database ID ref NP_416491.2
Organism Escherichia coli, Shigella sonnei, etc.
Annotation subname: full=multidrug efflux
system {eco:0000313|embl:aje56496.1};
Sequence Length 495

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region39-475
Protein Length495
Template PDB Code3vvrA
Template Region17-451
Sequence Identity20%
E-Value0
GA3411
MPQS1.10433
z-DOPE0.09
TSVMod MethodMSALL
TSVMod RMSD14.284
TSVMod NO350.062
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3vvr
DBALI3vvrA 
JenaImageLibrary3vvr 
Target Sequence
UniProtKBD8B339SubName: Full=MATE efflux family protein {ECO:0000313|EMBL:EFJ66479.1};
InterProD8B339 
PFAMD8B339 
ProdomD8B339 
UniProtKBD7ZXB0SubName: Full=MATE efflux family protein {ECO:0000313|EMBL:EFK24467.1};
InterProD7ZXB0 
PFAMD7ZXB0 
ProdomD7ZXB0 
UniProtKBC9QSK0SubName: Full=MATE efflux family protein;
InterProC9QSK0 
PFAMC9QSK0 
ProdomC9QSK0 
UniProtKBA0A0E1LAY0SubName: Full=Multidrug efflux system {ECO:0000313|EMBL:AJE56496.1};
InterProA0A0E1LAY0 
PFAMA0A0E1LAY0 
ProdomA0A0E1LAY0 
UniProtKBE6B2P8SubName: Full=Uncharacterized transporter yeeO {ECO:0000313|EMBL:EFU98631.1};
InterProE6B2P8 
PFAME6B2P8 
ProdomE6B2P8 
UniProtKBD7YCG9SubName: Full=MATE efflux family protein {ECO:0000313|EMBL:EFK05009.1};
InterProD7YCG9 
PFAMD7YCG9 
ProdomD7YCG9 
UniProtKBU5BD33SubName: Full=MATE family multidrug exporter;
InterProU5BD33 
PFAMU5BD33 
ProdomU5BD33 
UniProtKBP76352RecName: Full=Uncharacterized transporter YeeO;
InterProP76352 
PFAMP76352 
ProdomP76352 
UniProtKBD7XBZ1SubName: Full=MATE efflux family protein {ECO:0000313|EMBL:EFJ72215.1};
InterProD7XBZ1 
PFAMD7XBZ1 
ProdomD7XBZ1 
UniProtKBC6EB85SubName: Full=MATE efflux family protein {ECO:0000313|EMBL:ACT28717.1};
InterProC6EB85 
PFAMC6EB85 
ProdomC6EB85 
UniProtKBV0U0R6SubName: Full=MATE efflux family protein {ECO:0000313|EMBL:ESD25536.1};
InterProV0U0R6 
PFAMV0U0R6 
ProdomV0U0R6 
UniProtKBV0AL64SubName: Full=MATE efflux family protein {ECO:0000313|EMBL:ESA98481.1};
InterProV0AL64 
PFAMV0AL64 
ProdomV0AL64 
UniProtKBU9YFL0SubName: Full=MATE efflux family protein {ECO:0000313|EMBL:ESA68165.1};
InterProU9YFL0 
PFAMU9YFL0 
ProdomU9YFL0 
UniProtKBP94752RecName: Full=Uncharacterized transporter YeeO;
InterProP94752 
PFAMP94752 
ProdomP94752 
UniProtKBA0A2U8YD87SubName: Full=MATE family multidrug exporter {ECO:0000313|EMBL:AWN78493.1}
InterProA0A2U8YD87 
PFAMA0A2U8YD87 
ProdomA0A2U8YD87 
UniProtKBA0A4P8BYR1SubName: Full=MATE family multidrug exporter {ECO:0000313|EMBL:QCH93284.1}
InterProA0A4P8BYR1 
PFAMA0A4P8BYR1 
ProdomA0A4P8BYR1 
UniProtKBA0A656P5J4SubName: Full=MATE family multidrug exporter {ECO:0000313|EMBL:HAV85401.1}
InterProA0A656P5J4 
PFAMA0A656P5J4 
ProdomA0A656P5J4 
UniProtKBA0A140N5Y5SubName: Full=MATE efflux family protein {ECO:0000313|EMBL:ACT28717.1}
InterProA0A140N5Y5 
PFAMA0A140N5Y5 
ProdomA0A140N5Y5 
UniProtKBC9QSK0SubName: Full=MATE efflux family protein;
InterProC9QSK0 
PFAMC9QSK0 
ProdomC9QSK0 
UniProtKBA0A7Z1DG64SubName: Full=MATE family multidrug exporter {ECO:0000313|EMBL:OYG22496.1}
InterProA0A7Z1DG64 
PFAMA0A7Z1DG64 
ProdomA0A7Z1DG64 
UniProtKBC6EB85SubName: Full=MATE efflux family protein;
InterProC6EB85 
PFAMC6EB85 
ProdomC6EB85 
UniProtKBA0A828RB61SubName: Full=Uncharacterized transporter yeeO {ECO:0000313|EMBL:EFU98631.1}
InterProA0A828RB61 
PFAMA0A828RB61 
ProdomA0A828RB61 
UniProtKBD7XBZ1SubName: Full=MATE efflux family protein;
InterProD7XBZ1 
PFAMD7XBZ1 
ProdomD7XBZ1 
UniProtKBD7YCG9SubName: Full=MATE efflux family protein;
InterProD7YCG9 
PFAMD7YCG9 
ProdomD7YCG9 
UniProtKBD7ZXB0SubName: Full=MATE efflux family protein;
InterProD7ZXB0 
PFAMD7ZXB0 
ProdomD7ZXB0 
UniProtKBC4W5P7SubName: Full=MATE efflux family protein;
InterProC4W5P7 
PFAMC4W5P7 
ProdomC4W5P7 
UniProtKBD8B339SubName: Full=MATE efflux family protein;
InterProD8B339 
PFAMD8B339 
ProdomD8B339 
UniProtKBE6B2P8SubName: Full=Uncharacterized transporter yeeO;
InterProE6B2P8 
PFAME6B2P8 
ProdomE6B2P8 
UniProtKBA0A1X3L0I2SubName: Full=MATE efflux family protein {ECO:0000313|EMBL:OSL62276.1}
InterProA0A1X3L0I2 
PFAMA0A1X3L0I2 
ProdomA0A1X3L0I2 
UniProtKBP94752RecName: Full=Uncharacterized transporter YeeO;
InterProP94752 
PFAMP94752 
ProdomP94752 
UniProtKBP76352.3YEEO_ECOLI RecName: Full=Uncharacterized transporter yeeO
InterProP76352.3 
PFAMP76352.3 
ProdomP76352.3 
UniProtKBP76352RecName: Full=Uncharacterized transporter YeeO;
InterProP76352 
PFAMP76352 
ProdomP76352 
RefSeqNP_416491.2 predicted multdrug exporter, MATE family [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_003035902.1 hypothetical protein ECBD_1662 [Escherichia coli BL21-Gold(DE3)pLysS AG]
RefSeqZP_07118324.1 MATE efflux family protein [Escherichia coli MS 198-1]
RefSeqZP_07138076.1 MATE efflux family protein [Escherichia coli MS 182-1]
RefSeqZP_07146547.1 MATE efflux family protein [Escherichia coli MS 187-1]
RefSeqZP_07168761.1 MATE efflux family protein [Escherichia coli MS 175-1]
GenPept300956474 MATE efflux family protein [Escherichia coli MS 175-1]
GenPept300931203 MATE efflux family protein [Escherichia coli MS 187-1]
GenPept300921922 MATE efflux family protein [Escherichia coli MS 182-1]
GenPept300900131 MATE efflux family protein [Escherichia coli MS 198-1]
GenPept300460974 MATE efflux family protein [Escherichia coli MS 187-1]
GenPept300356345 MATE efflux family protein [Escherichia coli MS 198-1]
GenPept300421698 MATE efflux family protein [Escherichia coli MS 182-1]
GenPept300316695 MATE efflux family protein [Escherichia coli MS 175-1]
GenPept269849726YEEO_ECOLI RecName: Full=Uncharacterized transporter yeeO
GenPept260448910MATE efflux family protein
GenPept253773071 hypothetical protein ECBD_1662 [Escherichia coli BL21-Gold(DE3)pLysS AG]
GenPept253324115MATE efflux family protein
GenPept226524727 predicted multdrug exporter, MATE family [Escherichia coli str. K-12 substr. MG1655]
GenPept226510954putative multdrug exporter, MATE family
GenPept549813433putative multdrug exporter, MATE family
GenPept817575257putative multdrug exporter, MATE family
GenPept817587679putative multdrug exporter, MATE family
GenPept817579399putative multdrug exporter, MATE family
GenPept817591819putative multdrug exporter, MATE family
GenPept802135440putative multdrug exporter, MATE family
GenPept748270062multidrug efflux system
GenPept731470920putative multdrug exporter, MATE family
GenPept730583191putative multdrug exporter, MATE family
GenPept682119482putative multdrug exporter, MATE family
GenPept817583538putative multdrug exporter, MATE family
GenBankAAC75048.2 predicted multdrug exporter, MATE family [Escherichia coli str. K-12 substr. MG1655]
GenBankACT28717.1 MATE efflux family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
GenBankACX39332.1 MATE efflux family protein [Escherichia coli DH1]
GenBankEFJ72215.1 MATE efflux family protein [Escherichia coli MS 198-1]
GenBankEFJ66479.1 MATE efflux family protein [Escherichia coli MS 175-1]
GenBankEFK24467.1 MATE efflux family protein [Escherichia coli MS 187-1]
GenBankEFK05009.1 MATE efflux family protein [Escherichia coli MS 182-1]