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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link Q15116
Original Database ID gi 4826890
Organism Homo sapiens
Annotation programmed cell death protein
1 precursor (protein pd-1) (hpd-1)de
(cd279 anti gen)
Sequence Length 288

Dataset Information:

The newest dataset for this sequence was created on 2008-11-05. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region36-147
Protein Length288
Template PDB Code3bp5A
Template Region3-114
Sequence Identity67%
E-Value 0
GA3411
MPQS1.28
z-DOPE-1.5
TSVMod MethodNO3.5S
TSVMod RMSD
TSVMod NO350.933792
Datasethuman_2008
ModPipe Version2.0.2
Model Date2008-11-05

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Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB3bp5crystal structure of the mouse pd-1 and pd-l2 complex
DBALI3bp5A 
CATH2.60.40.10 Domain: 3bp5A00 Immunoglobulins (98%)
JenaImageLibrary3bp5 
Target Sequence
UniProtKBQ15116Programmed cell death protein 1 precursor (Protein PD-1) (hPD-1)DE (CD279 antigen)
InterProQ15116 
PFAMQ15116 
ProdomQ15116 
RefSeqNP_005009.1 programmed cell death 1 precursor [Homo sapiens]
GenPept757931781Sequence 19 from patent US 8609089
GenPept756393719Sequence 19 from patent US 8709416
GenPept568493545Sequence 48 from patent US 8586386
GenPept4826890 programmed cell death 1 [Homo sapiens]
GenPept378522507Sequence 19 from patent US 8114845
GenPept375662491Sequence 41 from patent US 8088905
GenPept331467147Sequence 2448 from patent US 7892745
GenPept331402037Sequence 2448 from patent US 7879556
GenPept294588690Sequence 2448 from patent US 7691569
GenPept239638784Sequence 41 from patent US 7521051
GenPept223629095Sequence 41 from patent US 7488802
GenPept223088563Sequence 6579 from patent US 6812339
GenPept2149003hPD-1
GenPept13959699PCD1_HUMAN PROGRAMED CELL DEATH PROTEIN 1 PRECURSOR (PROTEIN PD-1) (HPD-1)
GenBankAAC51773.1 hPD-1 [Homo sapiens]
UCSCGenomeBrowserQ15116