University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link O00517
Original Database ID EN ENSP00000335062.5
Organism Homo sapiens
Annotation recname: full=programmed cell
death protein 1;short=protein
pd-1;short=hpd-1;alt name: cd_antigen=cd279;flags:
precursor;
Sequence Length 288

Dataset Information:

The newest dataset for this sequence was created on 2020-05-15. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region33-147
Protein Length288
Template PDB Code6higB
Template Region33-147
Sequence Identity99%
E-Value0
GA3411
MPQS1.14021
z-DOPE-0.45
TSVMod MethodMSALL
TSVMod RMSD2.09
TSVMod NO351
DatasetMW-Human_D15
ModPipe VersionSVN.r1693
Model Date2020-05-15

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB6hig
DBALI6higB 
JenaImageLibrary6hig 
Target Sequence
UniProtKBO00517RecName: Full=Programmed cell death protein 1;Short=Protein PD-1;Short=hPD-1;AltName: CD_antigen=CD279;Flags: Precursor;
InterProO00517 
PFAMO00517 
ProdomO00517 
UniProtKBQ8IX89RecName: Full=Programmed cell death protein 1;Short=Protein PD-1;Short=hPD-1;AltName: CD_antigen=CD279;Flags: Precursor;
InterProQ8IX89 
PFAMQ8IX89 
ProdomQ8IX89 
UniProtKBQ15116RecName: Full=Programmed cell death protein 1;Short=Protein PD-1;Short=hPD-1;AltName: CD_antigen=CD279;Flags: Precursor;
InterProQ15116 
PFAMQ15116 
ProdomQ15116 
UniProtKBQ8IX89SubName: Full=Programmed cell death 1;SubName: Full=cDNA, FLJ94476, highly similar to Homo sapiens programmed cell death 1 (PDCD1), mRNA;
InterProQ8IX89 
PFAMQ8IX89 
ProdomQ8IX89 
UniProtKBA0A0M3M0G7SubName: Full=Programmed cell death 1 protein {ECO:0000313|EMBL:AJS10359.1}
InterProA0A0M3M0G7 
PFAMA0A0M3M0G7 
ProdomA0A0M3M0G7 
UniProtKBO00517RecName: Full=Programmed cell death protein 1;Short=Protein PD-1;Short=hPD-1;AltName: CD_antigen=CD279;Flags: Precursor;
InterProO00517 
PFAMO00517 
ProdomO00517 
UniProtKBQ8IX89RecName: Full=Programmed cell death protein 1;Short=Protein PD-1;Short=hPD-1;AltName: CD_antigen=CD279;Flags: Precursor;
InterProQ8IX89 
PFAMQ8IX89 
ProdomQ8IX89 
UniProtKBQ15116RecName: Full=Programmed cell death protein 1;Short=Protein PD-1;Short=hPD-1;AltName: CD_antigen=CD279;Flags: Precursor;
InterProQ15116 
PFAMQ15116 
ProdomQ15116 
UniProtKBQ15116.3PDCD1_HUMAN RecName: Full=Programmed cell death protein 1; Short=Protein PD-1; Short=hPD-1; AltName: CD_antigen=CD279; Flags: Precursor
InterProQ15116.3 
PFAMQ15116.3 
ProdomQ15116.3 
RefSeqNP_005009.2 programmed cell death protein 1 precursor [Homo sapiens]
GenPept915683968Sequence 92 from patent US 8993524
GenPept765526773programmed cell death 1 protein
GenPept765526771programmed cell death 1 protein
GenPept765526769programmed cell death 1 protein
GenPept649120360PDCD1, partial
GenPept119591704programmed cell death 1
GenPept145559515PDCD1_HUMAN RecName: Full=Programmed cell death protein 1; Short=Protein PD-1; Short=hPD-1; AltName: CD_antigen=CD279; Flags: Precursor
GenPept167857792 programmed cell death protein 1 precursor [Homo sapiens]
GenPept189054070unnamed protein product
GenPept24753745programmed cell death 1
GenPept29124993programmed cell death 1
GenPept307686347programmed cell death 1, partial
GenPept310906305unnamed protein product
GenPept117606484programmed cell death 1
GenPept389928837Sequence 1 from patent US 8168757
GenPept49902307Programmed cell death 1
GenPept550870095Sequence 2 from patent US 8552154
GenBankEAW71298.1 programmed cell death 1 [Homo sapiens]
GenBankABK41899.1 programmed cell death 1 [Homo sapiens]
GenBankAAO63583.1 programmed cell death 1 [Homo sapiens]
GenBankAAN64003.1 programmed cell death 1 [Homo sapiens]
GenBankAAH74740.1 Programmed cell death 1 [Homo sapiens]
ENSEMBLENSP00000335062Programmed cell death protein 1 precursor (Protein PD-1) (hPD-1). [Homo sapiens]
ENSEMBLENSP00000335062 
ENSEMBLENSP00000335062TDI sequence
ENSEMBLENSP00000335062