University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link 146620
Original Database ID GI 146620
Organism Escherichia coli, Escherichia coli str. K-12 substr.
W3110
Annotation d-alanine carboxypeptidase, partial
Sequence Length 180

Dataset Information:

The newest dataset for this sequence was created on 2013-06-24. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region3-133
Protein Length180
Template PDB Code1tvfA
Template Region240-382
Sequence Identity22%
E-Value5e-25
GA3410.03
Datasetnysgxrc_1tvf_3-06
ModPipe VersionModPipe1.0
Model Date2006-04-14

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1tvfcrystal structure of penicillin-binding protein 4 (pbp4) from staphylococcus aureus
DBALI1tvfA 
CATH2.30.140.20 Domain: 1tvfA02 Penicillin-binding protein associated domain; domain 2 (99%)
JenaImageLibrary1tvf 
Target Sequence
GenPept146620D-alanine carboxypeptidase, partial
GenBankAAA66340.1 D-alanine carboxypeptidase [Escherichia coli str. K-12 substr. W3110]