University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A090NEA9
Original Database ID
Organism Escherichia coli, Shigella flexneri, etc.
Annotation subname: full=chain length regulator
(capsular polysaccharide biosynthesis)
{eco :0000313|embl:esu78061.1};
Sequence Length 349

Dataset Information:

Only Template based calculation have been performed for this sequence. Template based calculations don't use all available PDB structures. To ensure that the most optimal template is used for this sequence, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region154-293
Protein Length349
Template PDB Code1nfnA
Template Region26-162
Sequence Identity16%
E-Value0
GA3410.08
MPQS0.461046
z-DOPE-0.55
Datasetcsmp_9-09
ModPipe VersionSVNx.x
Model Date2009-10-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1nfnapolipoprotein e3 (apoe3) ; PFAM: PF01442 ; SCOP: 16523
DBALI1nfnA 
CATH1.20.120.20 Domain: 1nfnA00 Apolipoprotein (APOA1 / APOA4 / APOE FAMILY) (96%)
JenaImageLibrary1nfn 
Target Sequence
UniProtKBQ3YVH8SubName: Full=Putative transport protein {ECO:0000313|EMBL:AAZ90484.1};
InterProQ3YVH8 
PFAMQ3YVH8 
ProdomQ3YVH8 
UniProtKBF4V8A8SubName: Full=Lipopolysaccharide biosynthesis protein WzzE {ECO:0000313|EMBL:EGI38945.1};
InterProF4V8A8 
PFAMF4V8A8 
ProdomF4V8A8 
UniProtKBF4TME4SubName: Full=Lipopolysaccharide biosynthesis protein WzzE {ECO:0000313|EMBL:EGI18874.1};
InterProF4TME4 
PFAMF4TME4 
ProdomF4TME4 
UniProtKBA0A0F6FEP2SubName: Full=Regulator of length of O-antigen component of lipopolysaccharide chains {ECO:0000313|EMBL:AJA28882.1};
InterProA0A0F6FEP2 
PFAMA0A0F6FEP2 
ProdomA0A0F6FEP2 
UniProtKBF4SRJ1SubName: Full=Lipopolysaccharide biosynthesis protein WzzE {ECO:0000313|EMBL:EGI08426.1};
InterProF4SRJ1 
PFAMF4SRJ1 
ProdomF4SRJ1 
UniProtKBD3QX79SubName: Full=Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:ADD59035.1};
InterProD3QX79 
PFAMD3QX79 
ProdomD3QX79 
UniProtKBD3H3Z4SubName: Full=Enterobacterial common antigen (ECA) polysaccharide chain length modulation protein {ECO:0000313|EMBL:CBG36989.1};
InterProD3H3Z4 
PFAMD3H3Z4 
ProdomD3H3Z4 
UniProtKBC3SKP2SubName: Full=Putative transport protein {ECO:0000313|EMBL:CCJ46415.1};SubName: Full=UDP-N-acetyl glucosamine-2-epimerase {ECO:0000313|EMBL:ACI75041.1};
InterProC3SKP2 
PFAMC3SKP2 
ProdomC3SKP2 
UniProtKBC1NGA1SubName: Full=Lipopolysaccharide biosynthesis protein WzzE;
InterProC1NGA1 
PFAMC1NGA1 
ProdomC1NGA1 
UniProtKBA0A090NEA9SubName: Full=Chain length regulator (Capsular polysaccharide biosynthesis) {ECO:0000313|EMBL:ESU78061.1};
InterProA0A090NEA9 
PFAMA0A090NEA9 
ProdomA0A090NEA9 
UniProtKBA0A0A7A298SubName: Full=Chain length regulator (Capsular polysaccharide biosynthesis) {ECO:0000313|EMBL:AHA68021.1};
InterProA0A0A7A298 
PFAMA0A0A7A298 
ProdomA0A0A7A298 
UniProtKBA0A0F6CBA1SubName: Full=Lipopolysaccharide biosynthesis protein WzzE {ECO:0000313|EMBL:AFJ31507.1};
InterProA0A0F6CBA1 
PFAMA0A0F6CBA1 
ProdomA0A0F6CBA1 
UniProtKBI1BBW4SubName: Full=Lipopolysaccharide biosynthesis protein;
InterProI1BBW4 
PFAMI1BBW4 
ProdomI1BBW4 
UniProtKBI2A2I3SubName: Full=Lipopolysaccharide biosynthesis protein WzzE;
InterProI2A2I3 
PFAMI2A2I3 
ProdomI2A2I3 
UniProtKBD2ABV5SubName: Full=Lipopolysaccharide biosynthesis protein wzzE {ECO:0000313|EMBL:ADA76159.1};
InterProD2ABV5 
PFAMD2ABV5 
ProdomD2ABV5 
UniProtKBJ7RYN5SubName: Full=Putative transport protein {ECO:0000313|EMBL:CCK49095.1};
InterProJ7RYN5 
PFAMJ7RYN5 
ProdomJ7RYN5 
UniProtKBQ329W4SubName: Full=Putative transport protein {ECO:0000313|EMBL:ABB63891.1};
InterProQ329W4 
PFAMQ329W4 
ProdomQ329W4 
UniProtKBQ31UJ9SubName: Full=Putative transport protein {ECO:0000313|EMBL:ABB68259.1};
InterProQ31UJ9 
PFAMQ31UJ9 
ProdomQ31UJ9 
UniProtKBI2A2I3SubName: Full=Lipopolysaccharide biosynthesis protein WzzE;
InterProI2A2I3 
PFAMI2A2I3 
ProdomI2A2I3 
UniProtKBC3SKP2SubName: Full=UDP-N-acetyl glucosamine-2-epimerase;
InterProC3SKP2 
PFAMC3SKP2 
ProdomC3SKP2 
UniProtKBC1NGA1SubName: Full=Lipopolysaccharide biosynthesis protein WzzE;
InterProC1NGA1 
PFAMC1NGA1 
ProdomC1NGA1 
UniProtKBA0A1X3KW30ECA polysaccharide chain length modulation protein {ECO:0000256|HAMAP-Rule:MF_02025}
InterProA0A1X3KW30 
PFAMA0A1X3KW30 
ProdomA0A1X3KW30 
UniProtKBA0A1X3JA10ECA polysaccharide chain length modulation protein {ECO:0000256|HAMAP-Rule:MF_02025}
InterProA0A1X3JA10 
PFAMA0A1X3JA10 
ProdomA0A1X3JA10 
UniProtKBA0A1X3IUK6ECA polysaccharide chain length modulation protein {ECO:0000256|HAMAP-Rule:MF_02025}
InterProA0A1X3IUK6 
PFAMA0A1X3IUK6 
ProdomA0A1X3IUK6 
UniProtKBQ329W4SubName: Full=Putative transport protein;
InterProQ329W4 
PFAMQ329W4 
ProdomQ329W4 
UniProtKBQ3YVH8SubName: Full=Putative transport protein;
InterProQ3YVH8 
PFAMQ3YVH8 
ProdomQ3YVH8 
UniProtKBQ31UJ9SubName: Full=Putative transport protein;
InterProQ31UJ9 
PFAMQ31UJ9 
ProdomQ31UJ9 
UniProtKBD2ABV5SubName: Full=Lipopolysaccharide biosynthesis protein wzzE;
InterProD2ABV5 
PFAMD2ABV5 
ProdomD2ABV5 
UniProtKBD3H3Z4SubName: Full=Enterobacterial common antigen (ECA) polysaccharide chain length modulation protein;
InterProD3H3Z4 
PFAMD3H3Z4 
ProdomD3H3Z4 
UniProtKBI1BBW4SubName: Full=Lipopolysaccharide biosynthesis protein;
InterProI1BBW4 
PFAMI1BBW4 
ProdomI1BBW4 
UniProtKBF4V8A8SubName: Full=Lipopolysaccharide biosynthesis protein WzzE;
InterProF4V8A8 
PFAMF4V8A8 
ProdomF4V8A8 
UniProtKBF4TME4SubName: Full=Lipopolysaccharide biosynthesis protein WzzE;
InterProF4TME4 
PFAMF4TME4 
ProdomF4TME4 
UniProtKBF4SRJ1SubName: Full=Lipopolysaccharide biosynthesis protein WzzE;
InterProF4SRJ1 
PFAMF4SRJ1 
ProdomF4SRJ1 
UniProtKBD3QX79SubName: Full=Lipopolysaccharide biosynthesis protein;
InterProD3QX79 
PFAMD3QX79 
ProdomD3QX79 
UniProtKBP76752Lipopolysaccharide biosynthesis protein wzzE
InterProP76752 
PFAMP76752 
ProdomP76752 
UniProtKBP25905Lipopolysaccharide biosynthesis protein wzzE
InterProP25905 
PFAMP25905 
ProdomP25905 
UniProtKBP0AG01Lipopolysaccharide biosynthesis protein wzzE
InterProP0AG01 
PFAMP0AG01 
ProdomP0AG01 
UniProtKBP0AG00Lipopolysaccharide biosynthesis protein wzzE
InterProP0AG00 
PFAMP0AG00 
ProdomP0AG00 
UniProtKBQ2M893Lipopolysaccharide biosynthesis protein wzzE
InterProQ2M893 
PFAMQ2M893 
ProdomQ2M893 
UniProtKBP0AG02Lipopolysaccharide biosynthesis protein wzzE
InterProP0AG02 
PFAMP0AG02 
ProdomP0AG02 
RefSeqZP_04873049.1 lipopolysaccharide biosynthesis protein WzzE [Escherichia sp. 1_1_43]
RefSeqNP_290416.1 lipopolysaccharide biosynthesis protein WzzE [Escherichia coli O157:H7 EDL933]
RefSeqNP_312745.1 lipopolysaccharide biosynthesis protein WzzE [Escherichia coli O157:H7 str. Sakai]
RefSeqYP_003502019.1 Lipopolysaccharide biosynthesis protein [Escherichia coli O55:H7 str. CB9615]
RefSeqYP_312719.1 lipopolysaccharide biosynthesis protein WzzE [Shigella sonnei Ss046]
RefSeqYP_405382.1 lipopolysaccharide biosynthesis protein WzzE [Shigella dysenteriae Sd197]
RefSeqYP_410087.1 lipopolysaccharide biosynthesis protein WzzE [Shigella boydii Sb227]
GenPept226838689lipopolysaccharide biosynthesis protein WzzE
GenPept24054345putative transport protein
GenPept254038998 lipopolysaccharide biosynthesis protein WzzE [Escherichia sp. 1_1_43]
GenPept281603175Lipopolysaccharide biosynthesis protein wzzE
GenPept284923890enterobacterial common antigen (ECA) polysaccharide chain length modulation protein
GenPept290765074Lipopolysaccharide biosynthesis protein
GenPept291285201 Lipopolysaccharide biosynthesis protein [Escherichia coli O55:H7 str. CB9615]
GenPept331036191lipopolysaccharide biosynthesis protein WzzE
GenPept209753476UDP-N-acetyl glucosamine -2-epimerase
GenPept209753474UDP-N-acetyl glucosamine -2-epimerase
GenPept12518649AE005610_4 putative transport protein
GenPept13364193putative transport protein
GenPept140869WZZE_ECOLI LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN WZZE
GenPept15804376 lipopolysaccharide biosynthesis protein WzzE [Escherichia coli O157:H7 EDL933]
GenPept15833972 lipopolysaccharide biosynthesis protein WzzE [Escherichia coli O157:H7 str. Sakai]
GenPept16131641 (NC_000913) putative transport protein [Escherichia coli K12]
GenPept209753468UDP-N-acetyl glucosamine -2-epimerase
GenPept2367281putative transport protein; modulator of enterobacterial common antigen (ECA
GenPept209753470UDP-N-acetyl glucosamine -2-epimerase
GenPept209753472UDP-N-acetyl glucosamine -2-epimerase
GenPept331046790lipopolysaccharide biosynthesis protein WzzE
GenPept331067541lipopolysaccharide biosynthesis protein WzzE
GenPept82546140 lipopolysaccharide biosynthesis protein WzzE [Shigella boydii Sb227]
GenPept81247551putative transport protein
GenPept802137078Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein
GenPept81243181putative transport protein
GenPept82779033 lipopolysaccharide biosynthesis protein WzzE [Shigella dysenteriae Sd197]
GenPept7465990D65182 hypothetical 39.5K protein (rfe 5' region) - Escherichia coli
GenPept74314300 lipopolysaccharide biosynthesis protein WzzE [Shigella sonnei Ss046]
GenPept73857777putative transport protein
GenPept412965165putative transport protein
GenPept734591681regulator of length of O-antigen component of lipopolysaccharide chains
GenPept386798473lipopolysaccharide biosynthesis protein WzzE
GenPept666006554regulator of length of O-antigen component of lipopolysaccharide chains
GenPept412971750putative transport protein
GenPept558575883Chain length regulator (capsular polysaccharide biosynthesis)
GenBankABB68259.1 putative transport protein [Shigella boydii Sb227]
GenBankABB63891.1 putative transport protein [Shigella dysenteriae Sd197]
GenBankAAZ90484.1 putative transport protein [Shigella sonnei Ss046]
GenBankAAG58980.1AE005610_4 putative transport protein [Escherichia coli O157:H7 EDL933]
GenBankEEH70717.1 lipopolysaccharide biosynthesis protein WzzE [Escherichia sp. 1_1_43]
GenBankADD59035.1 Lipopolysaccharide biosynthesis protein [Escherichia coli O55:H7 str. CB9615]
GenBankACI75043.1 UDP-N-acetyl glucosamine -2-epimerase [Escherichia coli]
GenBankACI75044.1 UDP-N-acetyl glucosamine -2-epimerase [Escherichia coli]
GenBankACI75045.1 UDP-N-acetyl glucosamine -2-epimerase [Escherichia coli]
GenBankADA76159.1 Lipopolysaccharide biosynthesis protein wzzE [Shigella flexneri 2002017]
GenBankACI75041.1 UDP-N-acetyl glucosamine -2-epimerase [Escherichia coli]
GenBankACI75042.1 UDP-N-acetyl glucosamine -2-epimerase [Escherichia coli]
EMBLCBG36989.1