University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P76268.1
Original Database ID ref NP_416341.1
Organism Escherichia coli, Shigella sonnei, etc.
Annotation kdgr_ecoli recname: full=transcriptional
regulator kdgr
Sequence Length 263

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region22-73
Protein Length263
Template PDB Code4lb6B
Template Region14-68
Sequence Identity23%
E-Value0
GA3410.98
MPQS0.632319
z-DOPE-1.89
TSVMod MethodMSALL
TSVMod RMSD2.798
TSVMod NO350.849
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB4lb6
DBALI4lb6B 
JenaImageLibrary4lb6 
Target Sequence
SFLD16129781Structure Function Linkage Database entry: Member of the Nucleophilic Attack 6-bladed Beta-Propeller (N6P) superfamily.
UniProtKBK3HTV1SubName: Full=Transcriptional regulator KdgR;
InterProK3HTV1 
PFAMK3HTV1 
ProdomK3HTV1 
UniProtKBA0A069XFG6SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KDU28804.1};
InterProA0A069XFG6 
PFAMA0A069XFG6 
ProdomA0A069XFG6 
UniProtKBA0A069Z7Q1SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KDU54934.1};
InterProA0A069Z7Q1 
PFAMA0A069Z7Q1 
ProdomA0A069Z7Q1 
UniProtKBA0A070YC77SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KDX88069.1};
InterProA0A070YC77 
PFAMA0A070YC77 
ProdomA0A070YC77 
UniProtKBA0A071AJS8SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KDY61684.1};
InterProA0A071AJS8 
PFAMA0A071AJS8 
ProdomA0A071AJS8 
UniProtKBA0A071BXG6SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KDY88599.1};
InterProA0A071BXG6 
PFAMA0A071BXG6 
ProdomA0A071BXG6 
UniProtKBA0A071CQN1SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KDZ16952.1};
InterProA0A071CQN1 
PFAMA0A071CQN1 
ProdomA0A071CQN1 
UniProtKBA0A071D9D7SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KDZ37653.1};
InterProA0A071D9D7 
PFAMA0A071D9D7 
ProdomA0A071D9D7 
UniProtKBA0A073GUC8SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KEJ68506.1};
InterProA0A073GUC8 
PFAMA0A073GUC8 
ProdomA0A073GUC8 
UniProtKBA0A073TQC1SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KEL22291.1};
InterProA0A073TQC1 
PFAMA0A073TQC1 
ProdomA0A073TQC1 
UniProtKBS0Z5V2SubName: Full=Transcriptional regulator kdgR;
InterProS0Z5V2 
PFAMS0Z5V2 
ProdomS0Z5V2 
UniProtKBO07975RecName: Full=Transcriptional regulator KdgR;
InterProO07975 
PFAMO07975 
ProdomO07975 
UniProtKBS1CCW4SubName: Full=Transcriptional regulator kdgR;
InterProS1CCW4 
PFAMS1CCW4 
ProdomS1CCW4 
UniProtKBK5FXD2SubName: Full=Transcriptional regulator KdgR;
InterProK5FXD2 
PFAMK5FXD2 
ProdomK5FXD2 
UniProtKBL2ZAG7SubName: Full=Transcriptional regulator kdgR;
InterProL2ZAG7 
PFAML2ZAG7 
ProdomL2ZAG7 
UniProtKBL3KPD1SubName: Full=Transcriptional regulator kdgR {ECO:0000313|EMBL:ELE00247.1};
InterProL3KPD1 
PFAML3KPD1 
ProdomL3KPD1 
UniProtKBL3VE39SubName: Full=Transcriptional regulator kdgR;
InterProL3VE39 
PFAML3VE39 
ProdomL3VE39 
UniProtKBL3VSJ0SubName: Full=Transcriptional regulator kdgR;
InterProL3VSJ0 
PFAML3VSJ0 
ProdomL3VSJ0 
UniProtKBL3ZZN9SubName: Full=Transcriptional regulator kdgR;
InterProL3ZZN9 
PFAML3ZZN9 
ProdomL3ZZN9 
UniProtKBL4P2G0SubName: Full=Transcriptional regulator kdgR;
InterProL4P2G0 
PFAML4P2G0 
ProdomL4P2G0 
UniProtKBM7UHK9SubName: Full=DNA-binding transcriptional repressor KdgR;
InterProM7UHK9 
PFAMM7UHK9 
ProdomM7UHK9 
UniProtKBN2KYS3SubName: Full=Pectin degradation repressor protein kdgR;
InterProN2KYS3 
PFAMN2KYS3 
ProdomN2KYS3 
UniProtKBA0A074HVW9SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KEN98644.1};
InterProA0A074HVW9 
PFAMA0A074HVW9 
ProdomA0A074HVW9 
UniProtKBA0A079FEB3SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KDY53009.1};
InterProA0A079FEB3 
PFAMA0A079FEB3 
ProdomA0A079FEB3 
UniProtKBW1BM41SubName: Full=Transcriptional regulator KdgR, KDG operon repressor {ECO:0000313|EMBL:CDK81706.1};
InterProW1BM41 
PFAMW1BM41 
ProdomW1BM41 
UniProtKBT8Z213SubName: Full=Transcriptional regulator kdgR;
InterProT8Z213 
PFAMT8Z213 
ProdomT8Z213 
UniProtKBE9WX75SubName: Full=Transcriptional regulator;
InterProE9WX75 
PFAME9WX75 
ProdomE9WX75 
UniProtKBS1K5H9SubName: Full=Transcriptional regulator kdgR;
InterProS1K5H9 
PFAMS1K5H9 
ProdomS1K5H9 
UniProtKBS0UZ56SubName: Full=Transcriptional regulator kdgR {ECO:0000313|EMBL:EOU60643.1};
InterProS0UZ56 
PFAMS0UZ56 
ProdomS0UZ56 
UniProtKBB1XH95SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProB1XH95 
PFAMB1XH95 
ProdomB1XH95 
UniProtKBC4ZZI4SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC4ZZI4 
PFAMC4ZZI4 
ProdomC4ZZI4 
UniProtKBD8AVA0SubName: Full=Transcriptional regulator KdgR {ECO:0000313|EMBL:EFK12935.1};
InterProD8AVA0 
PFAMD8AVA0 
ProdomD8AVA0 
UniProtKBD8BT85SubName: Full=Transcriptional regulator KdgR {ECO:0000313|EMBL:EFI90137.1};
InterProD8BT85 
PFAMD8BT85 
ProdomD8BT85 
UniProtKBU0CR13SubName: Full=Transcriptional regulator kdgR;
InterProU0CR13 
PFAMU0CR13 
ProdomU0CR13 
UniProtKBT9MUE7SubName: Full=Transcriptional regulator kdgR;
InterProT9MUE7 
PFAMT9MUE7 
ProdomT9MUE7 
UniProtKBT9J632SubName: Full=Transcriptional regulator kdgR;
InterProT9J632 
PFAMT9J632 
ProdomT9J632 
UniProtKBA0A079FXT0SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KDY64275.1};
InterProA0A079FXT0 
PFAMA0A079FXT0 
ProdomA0A079FXT0 
UniProtKBA0A079GWZ5SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KDY96847.1};
InterProA0A079GWZ5 
PFAMA0A079GWZ5 
ProdomA0A079GWZ5 
UniProtKBA0A080GMF8SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KEN90591.1};
InterProA0A080GMF8 
PFAMA0A080GMF8 
ProdomA0A080GMF8 
UniProtKBA0A080I224SubName: Full=Pectin degradation repressor protein kdgR {ECO:0000313|EMBL:KEO24099.1};
InterProA0A080I224 
PFAMA0A080I224 
ProdomA0A080I224 
UniProtKBA0A090KYP6SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:AJB51949.1};SubName: Full=Transcriptional regulator KdgR {ECO:0000313|EMBL:KGM69667.1};SubName: Full=Transcriptional regulator kdgR {ECO:00003
InterProA0A090KYP6 
PFAMA0A090KYP6 
ProdomA0A090KYP6 
UniProtKBA0A0E3H359SubName: Full=Transcriptional regulator KdgR {ECO:0000313|EMBL:AKA90846.1};
InterProA0A0E3H359 
PFAMA0A0E3H359 
ProdomA0A0E3H359 
UniProtKBA0A0G3HN04SubName: Full=DNA-binding transcriptional regulator f kdgK, kdgT, eda protein {ECO:0000313|EMBL:AKK12527.1};
InterProA0A0G3HN04 
PFAMA0A0G3HN04 
ProdomA0A0G3HN04 
UniProtKBT8X6Q4SubName: Full=Transcriptional regulator kdgR {ECO:0000313|EMBL:EQX52527.1};
InterProT8X6Q4 
PFAMT8X6Q4 
ProdomT8X6Q4 
UniProtKBT9I0X1SubName: Full=Transcriptional regulator kdgR;
InterProT9I0X1 
PFAMT9I0X1 
ProdomT9I0X1 
UniProtKBE1HMH4SubName: Full=Transcriptional regulator KdgR {ECO:0000313|EMBL:EFK90894.1};
InterProE1HMH4 
PFAME1HMH4 
ProdomE1HMH4 
UniProtKBI0ZSR2SubName: Full=Transcriptional regulator, IclR family protein;
InterProI0ZSR2 
PFAMI0ZSR2 
ProdomI0ZSR2 
UniProtKBF9QV94SubName: Full=DNA-binding transcriptional regulator KdgR;
InterProF9QV94 
PFAMF9QV94 
ProdomF9QV94 
UniProtKBT7ZBI7SubName: Full=Transcriptional regulator kdgR;
InterProT7ZBI7 
PFAMT7ZBI7 
ProdomT7ZBI7 
UniProtKBT8SF57SubName: Full=Transcriptional regulator kdgR;
InterProT8SF57 
PFAMT8SF57 
ProdomT8SF57 
UniProtKBG2EXS9SubName: Full=DNA-binding transcriptional regulator KdgR;
InterProG2EXS9 
PFAMG2EXS9 
ProdomG2EXS9 
UniProtKBH4VH34SubName: Full=Transcriptional regulator kdgR;
InterProH4VH34 
PFAMH4VH34 
ProdomH4VH34 
UniProtKBI2R2C9SubName: Full=Transcriptional regulator kdgR;
InterProI2R2C9 
PFAMI2R2C9 
ProdomI2R2C9 
UniProtKBK3H644SubName: Full=Transcriptional regulator KdgR;
InterProK3H644 
PFAMK3H644 
ProdomK3H644 
UniProtKBK5HVJ2SubName: Full=Pectin degradation repressor protein kdgR;
InterProK5HVJ2 
PFAMK5HVJ2 
ProdomK5HVJ2 
UniProtKBS0ZX05SubName: Full=Transcriptional regulator kdgR;
InterProS0ZX05 
PFAMS0ZX05 
ProdomS0ZX05 
UniProtKBL8BVF1SubName: Full=Transcriptional regulator KdgR, KDG operon repressor;
InterProL8BVF1 
PFAML8BVF1 
ProdomL8BVF1 
UniProtKBL3QXP6SubName: Full=Transcriptional regulator kdgR;
InterProL3QXP6 
PFAML3QXP6 
ProdomL3QXP6 
UniProtKBI2YMC4SubName: Full=Transcriptional regulator KdgR;
InterProI2YMC4 
PFAMI2YMC4 
ProdomI2YMC4 
UniProtKBF4SKY1SubName: Full=Transcriptional regulator KdgR {ECO:0000313|EMBL:EGI11456.1};
InterProF4SKY1 
PFAMF4SKY1 
ProdomF4SKY1 
UniProtKBL4WHY4SubName: Full=Transcriptional regulator kdgR;
InterProL4WHY4 
PFAML4WHY4 
ProdomL4WHY4 
UniProtKBS1LH64SubName: Full=Transcriptional regulator kdgR;
InterProS1LH64 
PFAMS1LH64 
ProdomS1LH64 
UniProtKBG2BA94SubName: Full=Transcriptional regulator kdgR;
InterProG2BA94 
PFAMG2BA94 
ProdomG2BA94 
UniProtKBV1APJ0SubName: Full=Transcriptional regulator KdgR {ECO:0000313|EMBL:ESD98818.1};
InterProV1APJ0 
PFAMV1APJ0 
ProdomV1APJ0 
UniProtKBI2P6U4SubName: Full=Transcriptional regulator kdgR;
InterProI2P6U4 
PFAMI2P6U4 
ProdomI2P6U4 
UniProtKBI2ZP80SubName: Full=Transcriptional regulator KdgR;
InterProI2ZP80 
PFAMI2ZP80 
ProdomI2ZP80 
UniProtKBL3RI39SubName: Full=Transcriptional regulator kdgR;
InterProL3RI39 
PFAML3RI39 
ProdomL3RI39 
UniProtKBL3WXC9SubName: Full=Transcriptional regulator kdgR;
InterProL3WXC9 
PFAML3WXC9 
ProdomL3WXC9 
UniProtKBS1PEG4SubName: Full=Transcriptional regulator kdgR;
InterProS1PEG4 
PFAMS1PEG4 
ProdomS1PEG4 
UniProtKBT9MK82SubName: Full=Transcriptional regulator kdgR;
InterProT9MK82 
PFAMT9MK82 
ProdomT9MK82 
UniProtKBH0QAB6SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProH0QAB6 
PFAMH0QAB6 
ProdomH0QAB6 
UniProtKBU0D9N0SubName: Full=Transcriptional regulator kdgR;
InterProU0D9N0 
PFAMU0D9N0 
ProdomU0D9N0 
UniProtKBH4VWV3SubName: Full=Transcriptional regulator kdgR;
InterProH4VWV3 
PFAMH4VWV3 
ProdomH4VWV3 
UniProtKBI2Y8D2SubName: Full=Transcriptional regulator KdgR;
InterProI2Y8D2 
PFAMI2Y8D2 
ProdomI2Y8D2 
UniProtKBI2XD59SubName: Full=Transcriptional regulator KdgR {ECO:0000313|EMBL:EII46929.1};
InterProI2XD59 
PFAMI2XD59 
ProdomI2XD59 
UniProtKBH4WC31SubName: Full=KdgR transcriptional repressor;
InterProH4WC31 
PFAMH4WC31 
ProdomH4WC31 
UniProtKBG2CKU8SubName: Full=Transcriptional regulator kdgR;
InterProG2CKU8 
PFAMG2CKU8 
ProdomG2CKU8 
UniProtKBM2P5R3SubName: Full=DNA-binding transcriptional regulator KdgR;
InterProM2P5R3 
PFAMM2P5R3 
ProdomM2P5R3 
UniProtKBG2AVU9SubName: Full=Transcriptional regulator kdgR;
InterProG2AVU9 
PFAMG2AVU9 
ProdomG2AVU9 
UniProtKBG0F6U5SubName: Full=Transcriptional regulator kdgR {ECO:0000313|EMBL:AEJ56866.1};
InterProG0F6U5 
PFAMG0F6U5 
ProdomG0F6U5 
UniProtKBS1KGQ2SubName: Full=Transcriptional regulator kdgR;
InterProS1KGQ2 
PFAMS1KGQ2 
ProdomS1KGQ2 
UniProtKBS0USS9SubName: Full=Transcriptional regulator kdgR;
InterProS0USS9 
PFAMS0USS9 
ProdomS0USS9 
UniProtKBS0Y955SubName: Full=Transcriptional regulator kdgR;
InterProS0Y955 
PFAMS0Y955 
ProdomS0Y955 
UniProtKBP76268RecName: Full=Transcriptional regulator KdgR;
InterProP76268 
PFAMP76268 
ProdomP76268 
UniProtKBT7JUR0SubName: Full=Transcriptional regulator kdgR;
InterProT7JUR0 
PFAMT7JUR0 
ProdomT7JUR0 
UniProtKBC4ZZI4SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC4ZZI4 
PFAMC4ZZI4 
ProdomC4ZZI4 
UniProtKBI2XD59SubName: Full=Transcriptional regulator KdgR;
InterProI2XD59 
PFAMI2XD59 
ProdomI2XD59 
UniProtKBI2P6U4SubName: Full=Transcriptional regulator kdgR;
InterProI2P6U4 
PFAMI2P6U4 
ProdomI2P6U4 
UniProtKBD8AVA0SubName: Full=Transcriptional regulator, IclR family protein;
InterProD8AVA0 
PFAMD8AVA0 
ProdomD8AVA0 
UniProtKBD8BT85SubName: Full=Transcriptional regulator, IclR family protein;
InterProD8BT85 
PFAMD8BT85 
ProdomD8BT85 
UniProtKBB1XH95SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProB1XH95 
PFAMB1XH95 
ProdomB1XH95 
UniProtKBI2ZP80SubName: Full=Transcriptional regulator KdgR;
InterProI2ZP80 
PFAMI2ZP80 
ProdomI2ZP80 
UniProtKBI2Y8D2SubName: Full=Transcriptional regulator KdgR;
InterProI2Y8D2 
PFAMI2Y8D2 
ProdomI2Y8D2 
UniProtKBH4WC31SubName: Full=KdgR transcriptional repressor;
InterProH4WC31 
PFAMH4WC31 
ProdomH4WC31 
UniProtKBI2YMC4SubName: Full=Transcriptional regulator KdgR;
InterProI2YMC4 
PFAMI2YMC4 
ProdomI2YMC4 
UniProtKBE1HMH4SubName: Full=Transcriptional regulator, IclR family protein;
InterProE1HMH4 
PFAME1HMH4 
ProdomE1HMH4 
UniProtKBA0A8F8DP70SubName: Full=DNA-binding transcriptional regulator KdgR {ECO:0000313|EMBL:QXZ38677.1}
InterProA0A8F8DP70 
PFAMA0A8F8DP70 
ProdomA0A8F8DP70 
UniProtKBA0A8F9N3F3SubName: Full=DNA-binding transcriptional regulator KdgR {ECO:0000313|EMBL:QYE41369.1}
InterProA0A8F9N3F3 
PFAMA0A8F9N3F3 
ProdomA0A8F9N3F3 
UniProtKBI0ZSR2SubName: Full=Transcriptional regulator, IclR family protein;
InterProI0ZSR2 
PFAMI0ZSR2 
ProdomI0ZSR2 
UniProtKBI2R2C9SubName: Full=Transcriptional regulator kdgR;
InterProI2R2C9 
PFAMI2R2C9 
ProdomI2R2C9