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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link A0A0H4IE38
Original Database ID UP P21420
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation subname: full=porin {eco:0000313|embl:ako56065.1};
Sequence Length 365

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region24-365
Protein Length365
Template PDB Code2j1nA
Template Region1-346
Sequence Identity67%
E-Value0
GA3411
MPQS1.60509
z-DOPE0.44
TSVMod MethodMTALL
TSVMod RMSD1.652
TSVMod NO350.951
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2j1nosmoporin ompc
DBALI2j1nA 
CATH2.40.160.10 Domain: 2j1nA00 Porin (100%)
JenaImageLibrary2j1n 
Target Sequence
UniProtKBT7HEG9SubName: Full=Outer membrane porin OmpD;
InterProT7HEG9 
PFAMT7HEG9 
ProdomT7HEG9 
UniProtKBF4VSV0SubName: Full=Outer membrane porin protein NmpC {ECO:0000313|EMBL:EGI51826.1};
InterProF4VSV0 
PFAMF4VSV0 
ProdomF4VSV0 
UniProtKBM2PF03SubName: Full=Outer membrane porin protein {ECO:0000313|EMBL:EMD14334.1};
InterProM2PF03 
PFAMM2PF03 
ProdomM2PF03 
UniProtKBA0A0H4IE38SubName: Full=Porin {ECO:0000313|EMBL:AKO56065.1};
InterProA0A0H4IE38 
PFAMA0A0H4IE38 
ProdomA0A0H4IE38 
UniProtKBM9ACE7SubName: Full=Outer membrane porin protein ompD;
InterProM9ACE7 
PFAMM9ACE7 
ProdomM9ACE7 
UniProtKBP21420RecName: Full=Putative outer membrane porin protein NmpC;Flags: Precursor;
InterProP21420 
PFAMP21420 
ProdomP21420 
UniProtKBP77189RecName: Full=Putative outer membrane porin protein NmpC;Flags: Precursor;
InterProP77189 
PFAMP77189 
ProdomP77189 
UniProtKBT6JUC7SubName: Full=Outer membrane porin OmpD;
InterProT6JUC7 
PFAMT6JUC7 
ProdomT6JUC7 
UniProtKBE3PHI5SubName: Full=Outer membrane porin protein {ECO:0000313|EMBL:CBJ00316.1};
InterProE3PHI5 
PFAME3PHI5 
ProdomE3PHI5 
UniProtKBF4VSV0SubName: Full=Outer membrane porin protein NmpC;
InterProF4VSV0 
PFAMF4VSV0 
ProdomF4VSV0 
UniProtKBE3PHI5SubName: Full=Outer membrane porin protein;
InterProE3PHI5 
PFAME3PHI5 
ProdomE3PHI5 
UniProtKBA0A8F9I1B6SubName: Full=Porin {ECO:0000313|EMBL:QYE38289.1}
InterProA0A8F9I1B6 
PFAMA0A8F9I1B6 
ProdomA0A8F9I1B6 
UniProtKBA0A7U9GBF4SubName: Full=Outer membrane porin protein NmpC {ECO:0000313|EMBL:EGI51826.1}
InterProA0A7U9GBF4 
PFAMA0A7U9GBF4 
ProdomA0A7U9GBF4 
UniProtKBA0A138KXY9SubName: Full=Outer membrane porin DLP12 prophage {ECO:0000313|EMBL:STI36769.1}SubName: Full=Outer membrane porin protein {ECO:0000313|EMBL:GDO46764.1}SubName: Full=Phosphoporin PhoE {ECO:0000313|EMBL
InterProA0A138KXY9 
PFAMA0A138KXY9 
ProdomA0A138KXY9 
UniProtKBP21420RecName: Full=Putative outer membrane porin protein NmpC;Flags: Precursor;
InterProP21420 
PFAMP21420 
ProdomP21420 
UniProtKBP21420.2NMPC_ECOLI RecName: Full=Putative outer membrane porin protein nmpC; Flags: Precursor
InterProP21420.2 
PFAMP21420.2 
ProdomP21420.2 
UniProtKBP77189RecName: Full=Putative outer membrane porin protein NmpC;Flags: Precursor;
InterProP77189 
PFAMP77189 
ProdomP77189 
GenPept331080650outer membrane porin protein NmpC
GenPept33112659NMPC_ECOLI RecName: Full=Putative outer membrane porin protein nmpC; Flags: Precursor
GenPept378428536Sequence 1447 from patent US 8119147
GenPept817147201porin
GenPept309701018outer membrane porin protein