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Sequence Information

Primary Database Link P00579.2
Original Database ID RpoD
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation rpod_ecoli recname: full=rna polymerase
sigma factor rpod; altname: full=sigma-7
0
Sequence Length 613

Dataset Information:

The newest dataset for this sequence was created on 2020-12-09. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region5-612
Protein Length613
Template PDB Code4lk1F
Template Region5-612
Sequence Identity100%
E-Value0
GA3411
MPQS1.91754
z-DOPE0.43
TSVMod MethodMSRED
TSVMod RMSD8.676
TSVMod NO350.384
DatasetMW-ModWeb20201209
ModPipe VersionSVN.r1703
Model Date2020-12-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB4lk1
DBALI4lk1F 
JenaImageLibrary4lk1 
Target Sequence
UniProtKBA0A0G3I620RecName: Full=RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963};AltName: Full=Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963};
InterProA0A0G3I620 
PFAMA0A0G3I620 
ProdomA0A0G3I620 
UniProtKBI0ZVD9RecName: Full=RNA polymerase sigma factor;
InterProI0ZVD9 
PFAMI0ZVD9 
ProdomI0ZVD9 
UniProtKBM2P4A6RecName: Full=RNA polymerase sigma factor;
InterProM2P4A6 
PFAMM2P4A6 
ProdomM2P4A6 
UniProtKBC9QYU5RecName: Full=RNA polymerase sigma factor;
InterProC9QYU5 
PFAMC9QYU5 
ProdomC9QYU5 
UniProtKBF9R4S1RecName: Full=RNA polymerase sigma factor;
InterProF9R4S1 
PFAMF9R4S1 
ProdomF9R4S1 
UniProtKBG2F5U1RecName: Full=RNA polymerase sigma factor;
InterProG2F5U1 
PFAMG2F5U1 
ProdomG2F5U1 
UniProtKBC4ZQY4RecName: Full=RNA polymerase sigma factor;
InterProC4ZQY4 
PFAMC4ZQY4 
ProdomC4ZQY4 
UniProtKBH0QEM0RecName: Full=RNA polymerase sigma factor;
InterProH0QEM0 
PFAMH0QEM0 
ProdomH0QEM0 
UniProtKBQ0P6L9RecName: Full=RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963};AltName: Full=Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963};
InterProQ0P6L9 
PFAMQ0P6L9 
ProdomQ0P6L9 
UniProtKBQ2M9D8RecName: Full=RNA polymerase sigma factor RpoD;AltName: Full=Sigma-70;
InterProQ2M9D8 
PFAMQ2M9D8 
ProdomQ2M9D8 
UniProtKBB1XG72RecName: Full=RNA polymerase sigma factor;
InterProB1XG72 
PFAMB1XG72 
ProdomB1XG72 
UniProtKBP00579RecName: Full=RNA polymerase sigma factor RpoD;AltName: Full=Sigma-70;
InterProP00579 
PFAMP00579 
ProdomP00579 
UniProtKBQ2M9D8RNA polymerase, sigma 70 (Sigma D) factor
InterProQ2M9D8 
PFAMQ2M9D8 
ProdomQ2M9D8 
UniProtKBC9QYU5RecName: Full=RNA polymerase sigma factor;
InterProC9QYU5 
PFAMC9QYU5 
ProdomC9QYU5 
UniProtKBF9R4S1RecName: Full=RNA polymerase sigma factor;
InterProF9R4S1 
PFAMF9R4S1 
ProdomF9R4S1 
UniProtKBG2F5U1RecName: Full=RNA polymerase sigma factor;
InterProG2F5U1 
PFAMG2F5U1 
ProdomG2F5U1 
UniProtKBC4ZQY4RecName: Full=RNA polymerase sigma factor;
InterProC4ZQY4 
PFAMC4ZQY4 
ProdomC4ZQY4 
UniProtKBH0QEM0RecName: Full=RNA polymerase sigma factor;
InterProH0QEM0 
PFAMH0QEM0 
ProdomH0QEM0 
UniProtKBB1XG72RecName: Full=RNA polymerase sigma factor;
InterProB1XG72 
PFAMB1XG72 
ProdomB1XG72 
UniProtKBA0A5Q3TCZ7RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}AltName: Full=Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}
InterProA0A5Q3TCZ7 
PFAMA0A5Q3TCZ7 
ProdomA0A5Q3TCZ7 
UniProtKBA0A8F9HCD3SubName: Full=RNA polymerase sigma factor RpoD {ECO:0000313|EMBL:QYE26344.1}
InterProA0A8F9HCD3 
PFAMA0A8F9HCD3 
ProdomA0A8F9HCD3 
UniProtKBQ0P6L9RecName: Full=RNA polymerase sigma factor;
InterProQ0P6L9 
PFAMQ0P6L9 
ProdomQ0P6L9 
UniProtKBI0ZVD9RecName: Full=RNA polymerase sigma factor;
InterProI0ZVD9 
PFAMI0ZVD9 
ProdomI0ZVD9 
UniProtKBP00579RecName: Full=RNA polymerase sigma factor RpoD {ECO:0000255|HAMAP-Rule:MF_00963};AltName: Full=Sigma-70 {ECO:0000255|HAMAP-Rule:MF_00963};
InterProP00579 
PFAMP00579 
ProdomP00579 
UniProtKBP00579.2RPOD_ECOLI RecName: Full=RNA polymerase sigma factor rpoD; AltName: Full=Sigma-70
InterProP00579.2 
PFAMP00579.2 
ProdomP00579.2 
UniProtKBQ2M9D8RecName: Full=RNA polymerase sigma factor RpoD {ECO:0000255|HAMAP-Rule:MF_00963};AltName: Full=Sigma-70 {ECO:0000255|HAMAP-Rule:MF_00963};
InterProQ2M9D8 
PFAMQ2M9D8 
ProdomQ2M9D8 
RefSeqNP_417539.1 RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_002927974.1 RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli BW2952]
RefSeqYP_001731930.1 RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli str. K-12 substr. DH10B]
RefSeqAP_003617.1 RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli str. K-12 substr. W3110]
PDB4YG2FChain F, X-ray Crystal Structur Of Escherichia Coli Rna Polymerase Sigma70 Holoenzyme
PDB4YG2LChain L, X-ray Crystal Structur Of Escherichia Coli Rna Polymerase Sigma70 Holoenzyme
PDB4ZH2FChain F, Crystal Structure Of Escherichia Coli Rna Polymerase In Complex With Cbr703
PDB4ZH2LChain L, Crystal Structure Of Escherichia Coli Rna Polymerase In Complex With Cbr703
PDB4ZH3FChain F, Crystal Structure Of Escherichia Coli Rna Polymerase In Complex With Cbrh16-br
PDB4ZH3LChain L, Crystal Structure Of Escherichia Coli Rna Polymerase In Complex With Cbrh16-br
PDB4ZH4FChain F, Crystal Structure Of Escherichia Coli Rna Polymerase In Complex With Cbrp18
PDB4ZH4LChain L, Crystal Structure Of Escherichia Coli Rna Polymerase In Complex With Cbrp18
PDB4JK2XChain X, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme In Complex With Guanosine Pentaphosphate (pppgpp)
PDB4YFXLChain L, Escherichia Coli Rna Polymerase In Complex With Myxopyronin B
PDB4YFXFChain F, Escherichia Coli Rna Polymerase In Complex With Myxopyronin B
PDB4YFNLChain L, Escherichia Coli Rna Polymerase In Complex With Squaramide Compound 14 (n-[3,4-dioxo-2-(4-{[4-(trifluoromethyl)benzyl]amino}piperidin-1-yl) Cyclobut-1-en-1-yl]-3,5-dimethyl-1,2-oxazole-4-sulf
PDB4LK1LChain L, Crystal Structure Analysis Of The E.coli Holoenzyme
PDB4LK1FChain F, Crystal Structure Analysis Of The E.coli Holoenzyme
PDB4KN7YChain Y, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Benzoxazinorifamycin-2c
PDB4KN7XChain X, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Benzoxazinorifamycin-2c
PDB4KN4YChain Y, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Benzoxazinorifamycin-2b
PDB4KMUYChain Y, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Rifampin
PDB4KMUXChain X, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Rifampin
PDB4JK2YChain Y, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme In Complex With Guanosine Pentaphosphate (pppgpp)
PDB4JK1YChain Y, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme In Complex With Guanosine Tetraphosphate (ppgpp)
PDB4JK1XChain X, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme In Complex With Guanosine Tetraphosphate (ppgpp)
PDB4IGCYChain Y, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme
PDB4IGCXChain X, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme
PDB4KN4XChain X, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Benzoxazinorifamycin-2b
PDB4LLGFChain F, Crystal Structure Analysis Of The E.coli Holoenzyme/gp2 Complex
PDB4MEYFChain F, Crystal Structure Of Escherichia Coli Rna Polymerase Holoenzyme
PDB4MEYLChain L, Crystal Structure Of Escherichia Coli Rna Polymerase Holoenzyme
PDB4MEXLChain L, Crystal Structure Of Escherichia Coli Rna Polymerase In Complex With Salinamide A
PDB4MEXFChain F, Crystal Structure Of Escherichia Coli Rna Polymerase In Complex With Salinamide A
PDB4LLGLChain L, Crystal Structure Analysis Of The E.coli Holoenzyme/gp2 Complex
PDB4YFKFChain F, Escherichia Coli Rna Polymerase In Complex With Squaramide Compound 8.
PDB4YFKLChain L, Escherichia Coli Rna Polymerase In Complex With Squaramide Compound 8.
PDB4YFNFChain F, Escherichia Coli Rna Polymerase In Complex With Squaramide Compound 14 (n-[3,4-dioxo-2-(4-{[4-(trifluoromethyl)benzyl]amino}piperidin-1-yl) Cyclobut-1-en-1-yl]-3,5-dimethyl-1,2-oxazole-4-sulf
GenPept817584545RNA polymerase, sigma 70 (sigma D) factor
GenPept817588686RNA polymerase, sigma 70 (sigma D) factor
GenPept817592826RNA polymerase, sigma 70 (sigma D) factor
GenPept827623118RNA polymerase, sigma 70 (sigma D) factor protein
GenPept85675868RNA polymerase, sigma 70 (sigma D) factor
GenPept808710453RNA polymerase sigma factor RpoD
GenPept827619109RNA polymerase, sigma 70 (sigma D) factor protein
GenPept808706098RNA polymerase sigma factor RpoD
GenPept808714821RNA polymerase sigma factor RpoD
GenPept808719231RNA polymerase sigma factor RpoD
GenPept808723601RNA polymerase sigma factor RpoD
GenPept808731918RNA polymerase sigma factor RpoD
GenPept808736350RNA polymerase sigma factor RpoD
GenPept817576264RNA polymerase, sigma 70 (sigma D) factor
GenPept817580406RNA polymerase, sigma 70 (sigma D) factor
GenPept882590CG Site No. 231; alternate gene name alt
GenPept636666380F Chain F, Crystal Structure Of Escherichia Coli Rna Polymerase In Complex With Salinamide A
GenPept507043517X Chain X, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Rifampin
GenPept478247515X Chain X, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme In Complex With Guanosine Tetraphosphate (ppgpp)
GenPept480312302X Chain X, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme In Complex With Guanosine Pentaphosphate (pppgpp)
GenPept478247521Y Chain Y, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme In Complex With Guanosine Tetraphosphate (ppgpp)
GenPept448262664Y Chain Y, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme
GenPept448262658X Chain X, X-ray Crystal Structure Of Escherichia Coli Sigma70 Holoenzyme
GenPept238902178 RNA polymerase, sigma 70 (sigma D) factor [Escherichia coli BW2952]
GenPept238863501RNA polymerase, sigma 70 (sigma D) factor
GenPept507043523Y Chain Y, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Rifampin
GenPept507043529X Chain X, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Benzoxazinorifamycin-2b
GenPept507043535Y Chain Y, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Benzoxazinorifamycin-2b
GenPept557805075L Chain L, Crystal Structure Analysis Of The E.coli Holoenzyme/gp2 Complex
GenPept557805069F Chain F, Crystal Structure Analysis Of The E.coli Holoenzyme/gp2 Complex
GenPept557805063L Chain L, Crystal Structure Analysis Of The E.coli Holoenzyme
GenPept557805057F Chain F, Crystal Structure Analysis Of The E.coli Holoenzyme
GenPept557273717RNA polymerase sigma factor RpoD
GenPept549814431RNA polymerase, sigma 70 (sigma D) factor
GenPept507043549Y Chain Y, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Benzoxazinorifamycin-2c
GenPept507043543X Chain X, X-ray Crystal Structure Of The Escherichia Coli Rna Polymerase In Complex With Benzoxazinorifamycin-2c