University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P05719.1
Original Database ID ref NP_418768.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation t1sk_ecoli recname: full=type-1
restriction enzyme ecoki specificity
protein; sh ort=s.ecoki; altname:
full=type i restriction enzyme
ecoki specificit ...
Sequence Length 464

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region5-422
Protein Length464
Template PDB Code3okgA
Template Region7-398
Sequence Identity19%
E-Value0
GA3411
MPQS1.01276
z-DOPE0.59
TSVMod MethodMSALL
TSVMod RMSD8.582
TSVMod NO350.444
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3okg
DBALI3okgA 
JenaImageLibrary3okg 
Target Sequence
UniProtKBT7UE64SubName: Full=Type-1 restriction enzyme EcoKI specificity protein;
InterProT7UE64 
PFAMT7UE64 
ProdomT7UE64 
UniProtKBA0A0H4ICI6SubName: Full=Restriction endonuclease EcoKI subunit S {ECO:0000313|EMBL:AKO55493.1};
InterProA0A0H4ICI6 
PFAMA0A0H4ICI6 
ProdomA0A0H4ICI6 
UniProtKBI0ZMN5SubName: Full=Type I restriction enzyme EcoKI specificity protein;
InterProI0ZMN5 
PFAMI0ZMN5 
ProdomI0ZMN5 
UniProtKBL5VD10SubName: Full=EcoKI restriction-modification system protein HsdS;
InterProL5VD10 
PFAML5VD10 
ProdomL5VD10 
UniProtKBL5FAR9SubName: Full=Type-1 restriction enzyme EcoKI specificity protein;
InterProL5FAR9 
PFAML5FAR9 
ProdomL5FAR9 
UniProtKBL4T2W3SubName: Full=Type-1 restriction enzyme EcoKI specificity protein;
InterProL4T2W3 
PFAML4T2W3 
ProdomL4T2W3 
UniProtKBL4KDV3SubName: Full=Type-1 restriction enzyme EcoKI specificity protein;
InterProL4KDV3 
PFAML4KDV3 
ProdomL4KDV3 
UniProtKBF9R0D7SubName: Full=EcoKI restriction-modification system protein HsdS;
InterProF9R0D7 
PFAMF9R0D7 
ProdomF9R0D7 
UniProtKBF4T9A9SubName: Full=Type I restriction enzyme EcoKI specificity protein (S protein)(S.EcoKI) {ECO:0000313|EMBL:EGI23332.1};
InterProF4T9A9 
PFAMF4T9A9 
ProdomF4T9A9 
UniProtKBC4ZT31SubName: Full=Specificity determinant for hsdM and hsdR;
InterProC4ZT31 
PFAMC4ZT31 
ProdomC4ZT31 
UniProtKBC9QSX0SubName: Full=EcoKI restriction-modification system protein HsdS;SubName: Full=Restriction modification system DNA specificity domain protein;
InterProC9QSX0 
PFAMC9QSX0 
ProdomC9QSX0 
UniProtKBP05719RecName: Full=Type-1 restriction enzyme EcoKI specificity protein;Short=S.EcoKI;AltName: Full=Type I restriction enzyme EcoKI specificity protein;Short=S protein;
InterProP05719 
PFAMP05719 
ProdomP05719 
UniProtKBT6KNF2SubName: Full=Type-1 restriction enzyme EcoKI specificity protein;
InterProT6KNF2 
PFAMT6KNF2 
ProdomT6KNF2 
UniProtKBA0A024KMK8SubName: Full=EcoKI restriction-modification system protein HsdS {ECO:0000313|EMBL:CDP65284.1};
InterProA0A024KMK8 
PFAMA0A024KMK8 
ProdomA0A024KMK8 
UniProtKBW1ANQ0SubName: Full=Type I restriction-modification system,specificity subunit S {ECO:0000313|EMBL:CDK69442.1};EC=3.1.21.3 {ECO:0000313|EMBL:CDK69442.1};
InterProW1ANQ0 
PFAMW1ANQ0 
ProdomW1ANQ0 
UniProtKBU9Z476SubName: Full=Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:ESA76405.1};
InterProU9Z476 
PFAMU9Z476 
ProdomU9Z476 
UniProtKBQ2M5W8RecName: Full=Type-1 restriction enzyme EcoKI specificity protein;Short=S.EcoKI;AltName: Full=Type I restriction enzyme EcoKI specificity protein;Short=S protein;
InterProQ2M5W8 
PFAMQ2M5W8 
ProdomQ2M5W8 
UniProtKBT8I114SubName: Full=Type-1 restriction enzyme EcoKI specificity protein;
InterProT8I114 
PFAMT8I114 
ProdomT8I114 
UniProtKBA0A0G3HL30SubName: Full=Specificity determinant for hsdM and hsdR protein {ECO:0000313|EMBL:AKK14026.1};
InterProA0A0G3HL30 
PFAMA0A0G3HL30 
ProdomA0A0G3HL30 
UniProtKBF9R0D7SubName: Full=EcoKI restriction-modification system protein HsdS;
InterProF9R0D7 
PFAMF9R0D7 
ProdomF9R0D7 
UniProtKBQ2M5W8Specificity determinant for hsdM and hsdR
InterProQ2M5W8 
PFAMQ2M5W8 
ProdomQ2M5W8 
UniProtKBI0ZMN5SubName: Full=Type I restriction enzyme EcoKI specificity protein;
InterProI0ZMN5 
PFAMI0ZMN5 
ProdomI0ZMN5 
UniProtKBC4ZT31SubName: Full=Specificity determinant for hsdM and hsdR;
InterProC4ZT31 
PFAMC4ZT31 
ProdomC4ZT31 
UniProtKBF4T9A9SubName: Full=Type I restriction enzyme EcoKI specificity protein (S protein)(S.EcoKI);
InterProF4T9A9 
PFAMF4T9A9 
ProdomF4T9A9 
UniProtKBA0A0L6Y0N6SubName: Full=Restriction endonuclease subunit S {ECO:0000313|EMBL:AWS64302.1}SubName: Full=Restriction-modification system protein HsdS {ECO:0000313|EMBL:GCP01005.1}SubName: Full=Type I restriction m
InterProA0A0L6Y0N6 
PFAMA0A0L6Y0N6 
ProdomA0A0L6Y0N6 
UniProtKBA0A5E8G2C5SubName: Full=EcoKI restriction-modification system protein HsdS {ECO:0000313|EMBL:CDU33059.1}
InterProA0A5E8G2C5 
PFAMA0A5E8G2C5 
ProdomA0A5E8G2C5 
UniProtKBA0A5Q3TFZ2SubName: Full=Type I restriction-modification system specificity subunit {ECO:0000313|EMBL:QGL43474.1}
InterProA0A5Q3TFZ2 
PFAMA0A5Q3TFZ2 
ProdomA0A5Q3TFZ2 
UniProtKBA0A8F9HA36SubName: Full=Type I restriction-modification system specificity subunit {ECO:0000313|EMBL:QYE25173.1}
InterProA0A8F9HA36 
PFAMA0A8F9HA36 
ProdomA0A8F9HA36 
UniProtKBC9QSX0SubName: Full=EcoKI restriction-modification system protein HsdS;SubName: Full=Restriction modification system DNA specificity domain protein;
InterProC9QSX0 
PFAMC9QSX0 
ProdomC9QSX0 
UniProtKBP05719.1T1SK_ECOLI RecName: Full=Type-1 restriction enzyme EcoKI specificity protein; Short=S.EcoKI; AltName: Full=Type I restriction enzyme EcoKI specificity protein; Short=S protein
InterProP05719.1 
PFAMP05719.1 
ProdomP05719.1 
UniProtKBP05719RecName: Full=Type-1 restriction enzyme EcoKI specificity protein;Short=S.EcoKI;AltName: Full=Type I restriction enzyme EcoKI specificity protein;Short=S protein;
InterProP05719 
PFAMP05719 
ProdomP05719 
UniProtKBQ2M5W8RecName: Full=Type-1 restriction enzyme EcoKI specificity protein;Short=S.EcoKI;AltName: Full=Type I restriction enzyme EcoKI specificity protein;Short=S protein;
InterProQ2M5W8 
PFAMQ2M5W8 
ProdomQ2M5W8 
RefSeqNP_418768.1 specificity determinant for hsdM and hsdR [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_002929232.1 specificity determinant for hsdM and hsdR [Escherichia coli BW2952]
RefSeqZP_07505839.1 EcoKI restriction-modification system protein HsdS [Escherichia coli M718]
RefSeqAP_004837.1 specificity determinant for hsdM and hsdR [Escherichia coli str. K-12 substr. W3110]
PDB2Y7CAChain A, Atomic Model Of The Ocr-bound Methylase Complex From The Type I Restriction-modification Enzyme Ecoki (m2s1). Based On Fitting Into Em Map 1534.
PDB2Y7HAChain A, Atomic Model Of The Dna-bound Methylase Complex From The Type I Restriction-modification Enzyme Ecoki (m2s1). Based On Fitting Into Em Map 1534
GenPept322812244A Chain A, Atomic Model Of The Ocr-bound Methylase Complex From The Type I Restriction-modification Enzyme Ecoki (m2s1). Based On Fitting Into Em Map 1534.
GenPept899734062restriction endonuclease EcoKI subunit S
GenPept899729542restriction endonuclease EcoKI subunit S
GenPept899725190restriction endonuclease EcoKI subunit S
GenPept89111057 specificity determinant for hsdM and hsdR [Escherichia coli str. K-12 substr. W3110]
GenPept135209T1SK_ECOLI RecName: Full=Type-1 restriction enzyme EcoKI specificity protein; Short=S.EcoKI; AltName: Full=Type I restriction enzyme EcoKI specificity protein; Short=S protein
GenPept537190CG Site No. 619; alternate gene name hss
GenPept549815619specificity determinant for hsdM and hsdR
GenPept557274488EcoKI restriction-modification system protein HsdS
GenPept63089095unnamed protein product
GenPept664686640restriction endonuclease EcoKI subunit S
GenPept665439139EcoKI restriction-modification system protein HsdS
GenPept67289NDECKS type I site-specific deoxyribonuclease (EC 3.1.21.3) EcoK chain S [validated] - Escherichia coli
GenPept682121691specificity determinant for hsdM and hsdR
GenPept687675104specificity determinant for hsdM and hsdR, subunit of EcoKI restriction-modification system
GenPept41746hsdS
GenPept33757452Sequence 430 from patent US 6589738
GenPept16132169 specificity determinant for hsdM and hsdR [Escherichia coli str. K-12 substr. MG1655]
GenPept1790807specificity determinant for hsdM and hsdR
GenPept238863570specificity determinant for hsdM and hsdR
GenPept238903436 specificity determinant for hsdM and hsdR [Escherichia coli BW2952]
GenPept260450839restriction modification system DNA specificity domain protein
GenPept307219415 EcoKI restriction-modification system protein HsdS [Escherichia coli M718]
GenPept315138903EcoKI restriction-modification system protein HsdS
GenPept322812249A Chain A, Atomic Model Of The Dna-bound Methylase Complex From The Type I Restriction-modification Enzyme Ecoki (m2s1). Based On Fitting Into Em Map 1534
GenPept331051283type I restriction enzyme EcoKI specificity protein (S protein)(S.EcoKI)
GenPept687679414specificity determinant for hsdM and hsdR, subunit of EcoKI restriction-modification system
GenPept732686077restriction endonuclease EcoKI subunit S
GenPept808728962restriction endonuclease EcoKI subunit S
GenPept808733374restriction endonuclease EcoKI subunit S
GenPept817577465specificity determinant for hsdM and hsdR
GenPept817581606specificity determinant for hsdM and hsdR
GenPept817585746specificity determinant for hsdM and hsdR
GenPept817589887specificity determinant for hsdM and hsdR
GenPept817594026specificity determinant for hsdM and hsdR
GenPept827618043specificity determinant for hsdM and hsdR protein
GenPept827620637specificity determinant for hsdM and hsdR protein
GenPept85677088specificity determinant for hsdM and hsdR
GenPept808711857restriction endonuclease EcoKI subunit S
GenPept802137578specificity determinant for hsdM and hsdR
GenPept808698745restriction endonuclease EcoKI subunit S
GenPept808720640restriction endonuclease EcoKI subunit S
GenPept808716269restriction endonuclease EcoKI subunit S
GenPept808707497restriction endonuclease EcoKI subunit S
GenBankAAC77304.1 specificity determinant for hsdM and hsdR [Escherichia coli str. K-12 substr. MG1655]
GenBankACX41261.1 restriction modification system DNA specificity domain protein [Escherichia coli DH1]
GenBankACR65568.1 specificity determinant for hsdM and hsdR [Escherichia coli BW2952]
GenBankAAA97245.1 CG Site No. 619; alternate gene name hss [Escherichia coli str. K-12 substr. MG1655]
EMBLCAA23554.1