University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A023YU82
Original Database ID ref NP_415440.1
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation subname: full=membrane protein
functionally coupled to the mukbef
chromosome par titioning mechanism
{eco:0000313|embl:ahy69537.1};
Sequence Length 259

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region70-249
Protein Length259
Template PDB Code3ca8A
Template Region6-212
Sequence Identity19%
E-Value0
GA3410.66
MPQS0.792881
z-DOPE-0.59
TSVMod MethodMSALL
TSVMod RMSD5.155
TSVMod NO350.604
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3ca8crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine utilizing enzyme
DBALI3ca8A 
CATH1.10.3620.10 Domain: 3ca8A01 YdcF like domain (50%)
CATH3.40.50.620 Domain: 3ca8A02 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 (100%)
JenaImageLibrary3ca8 
Target Sequence
UniProtKBE8IJE3SubName: Full=Uncharacterized protein;
InterProE8IJE3 
PFAME8IJE3 
ProdomE8IJE3 
UniProtKBA0A071DAA9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ37963.1};
InterProA0A071DAA9 
PFAMA0A071DAA9 
ProdomA0A071DAA9 
UniProtKBA0A073GXF7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEJ69869.1};
InterProA0A073GXF7 
PFAMA0A073GXF7 
ProdomA0A073GXF7 
UniProtKBA0A074IMN3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO13825.1};
InterProA0A074IMN3 
PFAMA0A074IMN3 
ProdomA0A074IMN3 
UniProtKBA0A079DKP0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY23399.1};
InterProA0A079DKP0 
PFAMA0A079DKP0 
ProdomA0A079DKP0 
UniProtKBA0A079FQM1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY62583.1};
InterProA0A079FQM1 
PFAMA0A079FQM1 
ProdomA0A079FQM1 
UniProtKBA0A079YHB6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEJ61503.1};
InterProA0A079YHB6 
PFAMA0A079YHB6 
ProdomA0A079YHB6 
UniProtKBA0A0E1T736SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EDU65247.1};
InterProA0A0E1T736 
PFAMA0A0E1T736 
ProdomA0A0E1T736 
UniProtKBA0A0E2L866SubName: Full=Inner membrane protein {ECO:0000313|EMBL:EQX30793.1};
InterProA0A0E2L866 
PFAMA0A0E2L866 
ProdomA0A0E2L866 
UniProtKBA0A0F6C1B8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFJ28024.1};
InterProA0A0F6C1B8 
PFAMA0A0F6C1B8 
ProdomA0A0F6C1B8 
UniProtKBA0A0F6F3H9SubName: Full=Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism {ECO:0000313|EMBL:AJA24969.1};
InterProA0A0F6F3H9 
PFAMA0A0F6F3H9 
ProdomA0A0F6F3H9 
UniProtKBA0A070YHZ3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX90074.1};
InterProA0A070YHZ3 
PFAMA0A070YHZ3 
ProdomA0A070YHZ3 
UniProtKBA0A070V2M4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX48044.1};
InterProA0A070V2M4 
PFAMA0A070V2M4 
ProdomA0A070V2M4 
UniProtKBD8A7Y9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK20735.1};
InterProD8A7Y9 
PFAMD8A7Y9 
ProdomD8A7Y9 
UniProtKBE7TLL0SubName: Full=Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism;
InterProE7TLL0 
PFAME7TLL0 
ProdomE7TLL0 
UniProtKBE9VK34SubName: Full=Putative uncharacterized protein;
InterProE9VK34 
PFAME9VK34 
ProdomE9VK34 
UniProtKBE9WCX8SubName: Full=Putative uncharacterized protein;
InterProE9WCX8 
PFAME9WCX8 
ProdomE9WCX8 
UniProtKBE9WR97SubName: Full=Putative uncharacterized protein;
InterProE9WR97 
PFAME9WR97 
ProdomE9WR97 
UniProtKBE9UM12SubName: Full=Putative uncharacterized protein;
InterProE9UM12 
PFAME9UM12 
ProdomE9UM12 
UniProtKBF4SM34SubName: Full=Putative KicA protein {ECO:0000313|EMBL:EGI10464.1};
InterProF4SM34 
PFAMF4SM34 
ProdomF4SM34 
UniProtKBF1YC67SubName: Full=Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism;
InterProF1YC67 
PFAMF1YC67 
ProdomF1YC67 
UniProtKBA7ZYM2SubName: Full=Putative uncharacterized protein;
InterProA7ZYM2 
PFAMA7ZYM2 
ProdomA7ZYM2 
UniProtKBB1LJU3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACB17000.1};
InterProB1LJU3 
PFAMB1LJU3 
ProdomB1LJU3 
UniProtKBB1IW11SubName: Full=Putative uncharacterized protein;Flags: Precursor;
InterProB1IW11 
PFAMB1IW11 
ProdomB1IW11 
UniProtKBA0A0G3J8F6SubName: Full=Membrane protein {ECO:0000313|EMBL:AKK36949.1};
InterProA0A0G3J8F6 
PFAMA0A0G3J8F6 
ProdomA0A0G3J8F6 
UniProtKBA0A0G3K281SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKK47583.1};
InterProA0A0G3K281 
PFAMA0A0G3K281 
ProdomA0A0G3K281 
UniProtKBD7XFX7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ70813.1};
InterProD7XFX7 
PFAMD7XFX7 
ProdomD7XFX7 
UniProtKBD2NGB2SubName: Full=Uncharacterized protein;
InterProD2NGB2 
PFAMD2NGB2 
ProdomD2NGB2 
UniProtKBC1HFH9SubName: Full=Uncharacterized protein;
InterProC1HFH9 
PFAMC1HFH9 
ProdomC1HFH9 
UniProtKBB1X8M4SubName: Full=Conserved inner membrane protein;
InterProB1X8M4 
PFAMB1X8M4 
ProdomB1X8M4 
UniProtKBE1HGH5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK92960.1};
InterProE1HGH5 
PFAME1HGH5 
ProdomE1HGH5 
UniProtKBD8BV48SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFI89466.1};
InterProD8BV48 
PFAMD8BV48 
ProdomD8BV48 
UniProtKBE4PBS5SubName: Full=Uncharacterized protein;
InterProE4PBS5 
PFAME4PBS5 
ProdomE4PBS5 
UniProtKBE3PIU1SubName: Full=Putative membrane protein {ECO:0000313|EMBL:CBJ00496.1};
InterProE3PIU1 
PFAME3PIU1 
ProdomE3PIU1 
UniProtKBE6AZG7SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFU99694.1};
InterProE6AZG7 
PFAME6AZG7 
ProdomE6AZG7 
UniProtKBE8HS27SubName: Full=Uncharacterized protein;
InterProE8HS27 
PFAME8HS27 
ProdomE8HS27 
UniProtKBD3H0E9SubName: Full=Putative membrane protein {ECO:0000313|EMBL:CBG33834.1};
InterProD3H0E9 
PFAMD3H0E9 
ProdomD3H0E9 
UniProtKBD3QPB7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ADD55755.1};
InterProD3QPB7 
PFAMD3QPB7 
ProdomD3QPB7 
UniProtKBC3TG72SubName: Full=Inner membrane protein {ECO:0000313|EMBL:KLX01135.1};SubName: Full=Probable membrane protein {ECO:0000313|EMBL:CDP72094.1};SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AJB5107
InterProC3TG72 
PFAMC3TG72 
ProdomC3TG72 
UniProtKBA0A0H3EGY2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ADR26267.1};
InterProA0A0H3EGY2 
PFAMA0A0H3EGY2 
ProdomA0A0H3EGY2 
UniProtKBA0A0H3PNG6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EDU91116.1};
InterProA0A0H3PNG6 
PFAMA0A0H3PNG6 
ProdomA0A0H3PNG6 
UniProtKBB2PAF2SubName: Full=Putative uncharacterized protein;
InterProB2PAF2 
PFAMB2PAF2 
ProdomB2PAF2 
UniProtKBB3C1D7SubName: Full=Putative uncharacterized protein;
InterProB3C1D7 
PFAMB3C1D7 
ProdomB3C1D7 
UniProtKBB3BHQ2SubName: Full=Putative uncharacterized protein;
InterProB3BHQ2 
PFAMB3BHQ2 
ProdomB3BHQ2 
UniProtKBB6ZTV2SubName: Full=Uncharacterized protein;
InterProB6ZTV2 
PFAMB6ZTV2 
ProdomB6ZTV2 
UniProtKBB3B549SubName: Full=Putative uncharacterized protein;
InterProB3B549 
PFAMB3B549 
ProdomB3B549 
UniProtKBB2NV37SubName: Full=Putative uncharacterized protein;
InterProB2NV37 
PFAMB2NV37 
ProdomB2NV37 
UniProtKBC6EI62SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT29697.1};
InterProC6EI62 
PFAMC6EI62 
ProdomC6EI62 
UniProtKBC4ZQ46SubName: Full=Conserved inner membrane protein;
InterProC4ZQ46 
PFAMC4ZQ46 
ProdomC4ZQ46 
UniProtKBE8I641SubName: Full=Uncharacterized protein;
InterProE8I641 
PFAME8I641 
ProdomE8I641 
UniProtKBE8HD78SubName: Full=Uncharacterized protein;
InterProE8HD78 
PFAME8HD78 
ProdomE8HD78 
UniProtKBA0A023YU82SubName: Full=Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism {ECO:0000313|EMBL:AHY69537.1};
InterProA0A023YU82 
PFAMA0A023YU82 
ProdomA0A023YU82 
UniProtKBA7ZK09SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABV17349.1};
InterProA7ZK09 
PFAMA7ZK09 
ProdomA7ZK09 
UniProtKBA0A069ZDH7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU55376.1};
InterProA0A069ZDH7 
PFAMA0A069ZDH7 
ProdomA0A069ZDH7 
UniProtKBA0A073TYK3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEL27556.1};
InterProA0A073TYK3 
PFAMA0A073TYK3 
ProdomA0A073TYK3 
UniProtKBA0A080IAB1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO26884.1};
InterProA0A080IAB1 
PFAMA0A080IAB1 
ProdomA0A080IAB1 
UniProtKBA0A0F6GLU1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAI54381.1};
InterProA0A0F6GLU1 
PFAMA0A0F6GLU1 
ProdomA0A0F6GLU1 
UniProtKBB3AR78SubName: Full=Putative uncharacterized protein;
InterProB3AR78 
PFAMB3AR78 
ProdomB3AR78 
UniProtKBB7N386SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CAR12322.1};
InterProB7N386 
PFAMB7N386 
ProdomB7N386 
UniProtKBC9QZT2SubName: Full=Uncharacterized protein;Flags: Precursor;
InterProC9QZT2 
PFAMC9QZT2 
ProdomC9QZT2 
UniProtKBD7ZT40SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK25945.1};
InterProD7ZT40 
PFAMD7ZT40 
ProdomD7ZT40 
UniProtKBE2KX33SubName: Full=Uncharacterized protein;
InterProE2KX33 
PFAME2KX33 
ProdomE2KX33 
UniProtKBE9XXA9SubName: Full=Putative uncharacterized protein;
InterProE9XXA9 
PFAME9XXA9 
ProdomE9XXA9 
UniProtKBE8IXH8SubName: Full=Uncharacterized protein;
InterProE8IXH8 
PFAME8IXH8 
ProdomE8IXH8 
UniProtKBE2KEW7SubName: Full=Uncharacterized protein;
InterProE2KEW7 
PFAME2KEW7 
ProdomE2KEW7 
UniProtKBA0A025CHJ7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYV15129.1};
InterProA0A025CHJ7 
PFAMA0A025CHJ7 
ProdomA0A025CHJ7 
UniProtKBE1RVM7SubName: Full=Uncharacterized protein;
InterProE1RVM7 
PFAME1RVM7 
ProdomE1RVM7 
UniProtKBA0A029PT53SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZK24778.1};
InterProA0A029PT53 
PFAMA0A029PT53 
ProdomA0A029PT53 
UniProtKBA0A0H3X3I4SubName: Full=Inner membrane protein {ECO:0000313|EMBL:AKM34485.1};
InterProA0A0H3X3I4 
PFAMA0A0H3X3I4 
ProdomA0A0H3X3I4 
UniProtKBE0QXL0SubName: Full=Uncharacterized protein;
InterProE0QXL0 
PFAME0QXL0 
ProdomE0QXL0 
UniProtKBE9V506SubName: Full=Putative uncharacterized protein;
InterProE9V506 
PFAME9V506 
ProdomE9V506 
UniProtKBA0A069XQ02SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU32248.1};
InterProA0A069XQ02 
PFAMA0A069XQ02 
ProdomA0A069XQ02 
UniProtKBA0A080GUP3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN91684.1};
InterProA0A080GUP3 
PFAMA0A080GUP3 
ProdomA0A080GUP3 
UniProtKBB3AAR7SubName: Full=Putative uncharacterized protein;
InterProB3AAR7 
PFAMB3AAR7 
ProdomB3AAR7 
UniProtKBC6UNI5SubName: Full=Conserved inner membrane protein;
InterProC6UNI5 
PFAMC6UNI5 
ProdomC6UNI5 
UniProtKBE2WSX8SubName: Full=Putative uncharacterized protein;
InterProE2WSX8 
PFAME2WSX8 
ProdomE2WSX8 
UniProtKBE8JCJ9SubName: Full=Putative uncharacterized protein;
InterProE8JCJ9 
PFAME8JCJ9 
ProdomE8JCJ9 
UniProtKBB2PT89SubName: Full=Putative uncharacterized protein;
InterProB2PT89 
PFAMB2PT89 
ProdomB2PT89 
UniProtKBB3XGP5SubName: Full=Putative uncharacterized protein;
InterProB3XGP5 
PFAMB3XGP5 
ProdomB3XGP5 
UniProtKBB5YT54SubName: Full=Uncharacterized protein;
InterProB5YT54 
PFAMB5YT54 
ProdomB5YT54 
UniProtKBC5W2U0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT29697.1};
InterProC5W2U0 
PFAMC5W2U0 
ProdomC5W2U0 
UniProtKBC6UEQ5SubName: Full=Conserved inner membrane protein;
InterProC6UEQ5 
PFAMC6UEQ5 
ProdomC6UEQ5 
UniProtKBD6ILZ7SubName: Full=Putative uncharacterized protein;
InterProD6ILZ7 
PFAMD6ILZ7 
ProdomD6ILZ7 
UniProtKBD7JLT0SubName: Full=Putative uncharacterized protein;
InterProD7JLT0 
PFAMD7JLT0 
ProdomD7JLT0 
UniProtKBB2N5C0SubName: Full=Putative uncharacterized protein;
InterProB2N5C0 
PFAMB2N5C0 
ProdomB2N5C0 
UniProtKBE2JU83SubName: Full=Uncharacterized protein;
InterProE2JU83 
PFAME2JU83 
ProdomE2JU83 
UniProtKBE5ZTG6SubName: Full=Uncharacterized protein;
InterProE5ZTG6 
PFAME5ZTG6 
ProdomE5ZTG6 
UniProtKBA0A0H2YXG3SubName: Full=YcbC {ECO:0000313|EMBL:ABJ00337.1};
InterProA0A0H2YXG3 
PFAMA0A0H2YXG3 
ProdomA0A0H2YXG3 
UniProtKBA0A0G2S8V4SubName: Full=Membrane protein {ECO:0000313|EMBL:AJM73050.1};
InterProA0A0G2S8V4 
PFAMA0A0G2S8V4 
ProdomA0A0G2S8V4 
UniProtKBA0A0E3KEN7SubName: Full=Envelope biogenesis factor ElyC {ECO:0000313|EMBL:AKA89899.1};
InterProA0A0E3KEN7 
PFAMA0A0E3KEN7 
ProdomA0A0E3KEN7 
UniProtKBD8AQR6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK14518.1};
InterProD8AQR6 
PFAMD8AQR6 
ProdomD8AQR6 
UniProtKBE9YB44SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EGB68397.1};
InterProE9YB44 
PFAME9YB44 
ProdomE9YB44 
UniProtKBA1A9J7SubName: Full=YcbC;
InterProA1A9J7 
PFAMA1A9J7 
ProdomA1A9J7 
UniProtKBF1XLJ4SubName: Full=Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism;
InterProF1XLJ4 
PFAMF1XLJ4 
ProdomF1XLJ4 
UniProtKBA0A070STI3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX20715.1};
InterProA0A070STI3 
PFAMA0A070STI3 
ProdomA0A070STI3 
UniProtKBA0A071AL93SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY60150.1};
InterProA0A071AL93 
PFAMA0A071AL93 
ProdomA0A071AL93 
UniProtKBA0A074HWY2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO00544.1};
InterProA0A074HWY2 
PFAMA0A074HWY2 
ProdomA0A074HWY2 
UniProtKBA0A079F5Q0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY52098.1};
InterProA0A079F5Q0 
PFAMA0A079F5Q0 
ProdomA0A079F5Q0 
UniProtKBA0A0E1LX95SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AJF55688.1};
InterProA0A0E1LX95 
PFAMA0A0E1LX95 
ProdomA0A0E1LX95 
UniProtKBD8B0D4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ67439.1};
InterProD8B0D4 
PFAMD8B0D4 
ProdomD8B0D4