University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A0E3MYP9
Original Database ID ref NP_416315.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation subname: full=putative transporter
yeav {eco:0000313|embl:aka90819.1};
Sequence Length 481

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region1-447
Protein Length481
Template PDB Code3hfxA
Template Region59-504
Sequence Identity30%
E-Value0
GA3411
MPQS1.39381
z-DOPE-0.74
TSVMod MethodMSALL
TSVMod RMSD10.333
TSVMod NO350.132
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3hfxcrystal structure of carnitine transporter
DBALI3hfxA 
JenaImageLibrary3hfx 
Target Sequence
UniProtKBI0ZSU1SubName: Full=Transporter, betaine/carnitine/choline transporter family;
InterProI0ZSU1 
PFAMI0ZSU1 
ProdomI0ZSU1 
UniProtKBP0ABD2RecName: Full=Uncharacterized transporter YeaV;
InterProP0ABD2 
PFAMP0ABD2 
ProdomP0ABD2 
UniProtKBB7NSX5SubName: Full=Putative transporter;
InterProB7NSX5 
PFAMB7NSX5 
ProdomB7NSX5 
UniProtKBI1ZWH5SubName: Full=Putative transporter;
InterProI1ZWH5 
PFAMI1ZWH5 
ProdomI1ZWH5 
UniProtKBN4H9I3SubName: Full=Transporter, betaine/carnitine/choline transporter family protein;
InterProN4H9I3 
PFAMN4H9I3 
ProdomN4H9I3 
UniProtKBM2P7B0SubName: Full=Transporter;
InterProM2P7B0 
PFAMM2P7B0 
ProdomM2P7B0 
UniProtKBK3I2J7SubName: Full=Putative transport protein;
InterProK3I2J7 
PFAMK3I2J7 
ProdomK3I2J7 
UniProtKBC3SDG1SubName: Full=Putative transport protein {ECO:0000313|EMBL:ACI72518.1};SubName: Full=Transporter, betaine/carnitine/choline transporter family protein {ECO:0000313|EMBL:CEE07030.1};
InterProC3SDG1 
PFAMC3SDG1 
ProdomC3SDG1 
UniProtKBN4HMV9SubName: Full=Transporter, betaine/carnitine/choline transporter family protein;
InterProN4HMV9 
PFAMN4HMV9 
ProdomN4HMV9 
UniProtKBC5W545SubName: Full=Predicted transporter;
InterProC5W545 
PFAMC5W545 
ProdomC5W545 
UniProtKBP76252RecName: Full=Uncharacterized transporter YeaV;
InterProP76252 
PFAMP76252 
ProdomP76252 
UniProtKBB7M275SubName: Full=Putative transporter;
InterProB7M275 
PFAMB7M275 
ProdomB7M275 
UniProtKBH4FFY0SubName: Full=Putative transporter;
InterProH4FFY0 
PFAMH4FFY0 
ProdomH4FFY0 
UniProtKBH0Q8L1SubName: Full=Predicted transporter;
InterProH0Q8L1 
PFAMH0Q8L1 
ProdomH0Q8L1 
UniProtKBA0A0H3MFT7SubName: Full=Putative transporter {ECO:0000313|EMBL:CAR17386.1};
InterProA0A0H3MFT7 
PFAMA0A0H3MFT7 
ProdomA0A0H3MFT7 
UniProtKBA0A0F6C593SubName: Full=Putative transporter {ECO:0000313|EMBL:AFJ29399.1};
InterProA0A0F6C593 
PFAMA0A0F6C593 
ProdomA0A0F6C593 
UniProtKBA0A0E3MYP9SubName: Full=Putative transporter YeaV {ECO:0000313|EMBL:AKA90819.1};
InterProA0A0E3MYP9 
PFAMA0A0E3MYP9 
ProdomA0A0E3MYP9 
UniProtKBB1IPD1SubName: Full=Choline/carnitine/betaine transporter;
InterProB1IPD1 
PFAMB1IPD1 
ProdomB1IPD1 
UniProtKBB1XGR1SubName: Full=Predicted transporter;
InterProB1XGR1 
PFAMB1XGR1 
ProdomB1XGR1 
UniProtKBB3XJ79SubName: Full=Transporter, betaine/carnitine/choline transporter;
InterProB3XJ79 
PFAMB3XJ79 
ProdomB3XJ79 
UniProtKBB7L6S9SubName: Full=YeaV protein {ECO:0000313|EMBL:CAU97832.1};
InterProB7L6S9 
PFAMB7L6S9 
ProdomB7L6S9 
UniProtKBC6UJB6SubName: Full=Predicted transporter;
InterProC6UJB6 
PFAMC6UJB6 
ProdomC6UJB6 
UniProtKBK5H595SubName: Full=Transporter, betaine/carnitine/choline transporter family protein;
InterProK5H595 
PFAMK5H595 
ProdomK5H595 
UniProtKBI2Y8S6SubName: Full=Transporter, betaine/carnitine/choline family;
InterProI2Y8S6 
PFAMI2Y8S6 
ProdomI2Y8S6 
UniProtKBG2EXQ2SubName: Full=Putative transporter;
InterProG2EXQ2 
PFAMG2EXQ2 
ProdomG2EXQ2 
UniProtKBF9QV68SubName: Full=Putative transporter;
InterProF9QV68 
PFAMF9QV68 
ProdomF9QV68 
UniProtKBI2YMA8SubName: Full=Transporter, betaine/carnitine/choline family;
InterProI2YMA8 
PFAMI2YMA8 
ProdomI2YMA8 
UniProtKBN4H6A5SubName: Full=Transporter, betaine/carnitine/choline transporter family protein;
InterProN4H6A5 
PFAMN4H6A5 
ProdomN4H6A5 
UniProtKBC4ZZF7SubName: Full=Predicted transporter;
InterProC4ZZF7 
PFAMC4ZZF7 
ProdomC4ZZF7 
UniProtKBP0ABD1RecName: Full=Uncharacterized transporter YeaV;
InterProP0ABD1 
PFAMP0ABD1 
ProdomP0ABD1 
UniProtKBC6VER3SubName: Full=Predicted transporter;
InterProC6VER3 
PFAMC6VER3 
ProdomC6VER3 
UniProtKBP97208RecName: Full=Uncharacterized transporter YeaV;
InterProP97208 
PFAMP97208 
ProdomP97208 
UniProtKBI4TBY2SubName: Full=Putative transporter;
InterProI4TBY2 
PFAMI4TBY2 
ProdomI4TBY2 
UniProtKBI2ZS16SubName: Full=Transporter, betaine/carnitine/choline family;
InterProI2ZS16 
PFAMI2ZS16 
ProdomI2ZS16 
UniProtKBJ7RRY4SubName: Full=Putative transport protein {ECO:0000313|EMBL:CCK47031.1};
InterProJ7RRY4 
PFAMJ7RRY4 
ProdomJ7RRY4 
UniProtKBN4G459SubName: Full=Transporter, betaine/carnitine/choline transporter family protein;
InterProN4G459 
PFAMN4G459 
ProdomN4G459 
UniProtKBA0A7B5I5N1SubName: Full=Transporter {ECO:0000313|EMBL:HAJ6400876.1}
InterProA0A7B5I5N1 
PFAMA0A7B5I5N1 
ProdomA0A7B5I5N1 
UniProtKBA0A656NXN7SubName: Full=Transporter {ECO:0000313|EMBL:HAV83105.1}
InterProA0A656NXN7 
PFAMA0A656NXN7 
ProdomA0A656NXN7 
UniProtKBA0A236RB47SubName: Full=BCCT family transporter {ECO:0000313|EMBL:KAA1334313.1}SubName: Full=Putative transport protein {ECO:0000313|EMBL:ACI72518.1}SubName: Full=Transporter {ECO:0000313|EMBL:ARR35004.1}
InterProA0A236RB47 
PFAMA0A236RB47 
ProdomA0A236RB47 
UniProtKBA0A5Q3T9L1SubName: Full=BCCT family transporter {ECO:0000313|EMBL:QGL41168.1}
InterProA0A5Q3T9L1 
PFAMA0A5Q3T9L1 
ProdomA0A5Q3T9L1 
UniProtKBA0A7D4MG38SubName: Full=BCCT family transporter {ECO:0000313|EMBL:QKI52735.1}
InterProA0A7D4MG38 
PFAMA0A7D4MG38 
ProdomA0A7D4MG38 
UniProtKBB1IPD1SubName: Full=Choline/carnitine/betaine transporter;
InterProB1IPD1 
PFAMB1IPD1 
ProdomB1IPD1 
UniProtKBI1ZWH5SubName: Full=Putative transporter;
InterProI1ZWH5 
PFAMI1ZWH5 
ProdomI1ZWH5 
UniProtKBI0ZSU1SubName: Full=Transporter, betaine/carnitine/choline transporter family;
InterProI0ZSU1 
PFAMI0ZSU1 
ProdomI0ZSU1 
UniProtKBI2YMA8SubName: Full=Transporter, betaine/carnitine/choline family;
InterProI2YMA8 
PFAMI2YMA8 
ProdomI2YMA8 
UniProtKBH4FFY0SubName: Full=Putative transporter;
InterProH4FFY0 
PFAMH4FFY0 
ProdomH4FFY0 
UniProtKBF9QV68SubName: Full=Putative transporter;
InterProF9QV68 
PFAMF9QV68 
ProdomF9QV68 
UniProtKBI2Y8S6SubName: Full=Transporter, betaine/carnitine/choline family;
InterProI2Y8S6 
PFAMI2Y8S6 
ProdomI2Y8S6 
UniProtKBA0A8E2TD11SubName: Full=Transporter {ECO:0000313|EMBL:PAY97510.1}
InterProA0A8E2TD11 
PFAMA0A8E2TD11 
ProdomA0A8E2TD11 
UniProtKBB7M275SubName: Full=Putative transporter;
InterProB7M275 
PFAMB7M275 
ProdomB7M275 
UniProtKBA0A7Z8BBF7SubName: Full=BCCT family transporter {ECO:0000313|EMBL:TFB36586.1}
InterProA0A7Z8BBF7 
PFAMA0A7Z8BBF7 
ProdomA0A7Z8BBF7 
UniProtKBH0Q8L1SubName: Full=Predicted transporter;
InterProH0Q8L1 
PFAMH0Q8L1 
ProdomH0Q8L1 
UniProtKBB1XGR1SubName: Full=Predicted transporter;
InterProB1XGR1 
PFAMB1XGR1 
ProdomB1XGR1 
UniProtKBC5W545SubName: Full=Predicted transporter;
InterProC5W545 
PFAMC5W545 
ProdomC5W545 
UniProtKBC4ZZF7SubName: Full=Predicted transporter;
InterProC4ZZF7 
PFAMC4ZZF7 
ProdomC4ZZF7 
UniProtKBC3SDG1SubName: Full=Putative transport protein;
InterProC3SDG1 
PFAMC3SDG1 
ProdomC3SDG1 
UniProtKBI2ZS16SubName: Full=Transporter, betaine/carnitine/choline family;
InterProI2ZS16 
PFAMI2ZS16 
ProdomI2ZS16 
UniProtKBI4TBY2SubName: Full=Putative transporter;
InterProI4TBY2 
PFAMI4TBY2 
ProdomI4TBY2 
UniProtKBC6VER3SubName: Full=Predicted transporter;
InterProC6VER3 
PFAMC6VER3 
ProdomC6VER3 
UniProtKBG2EXQ2SubName: Full=Putative transporter;
InterProG2EXQ2 
PFAMG2EXQ2 
ProdomG2EXQ2 
UniProtKBA0A854NNA3SubName: Full=Transporter {ECO:0000313|EMBL:OWR12534.1}
InterProA0A854NNA3 
PFAMA0A854NNA3 
ProdomA0A854NNA3 
UniProtKBC6UJB6SubName: Full=Predicted transporter;
InterProC6UJB6 
PFAMC6UJB6 
ProdomC6UJB6 
UniProtKBB3XJ79SubName: Full=Transporter, betaine/carnitine/choline transporter;
InterProB3XJ79 
PFAMB3XJ79 
ProdomB3XJ79 
UniProtKBB7L6S9SubName: Full=Putative transporter;
InterProB7L6S9 
PFAMB7L6S9 
ProdomB7L6S9 
UniProtKBB7NSX5SubName: Full=Putative transporter;
InterProB7NSX5 
PFAMB7NSX5 
ProdomB7NSX5 
UniProtKBP97208RecName: Full=Uncharacterized transporter YeaV;
InterProP97208 
PFAMP97208 
ProdomP97208 
UniProtKBP0ABD1RecName: Full=Uncharacterized transporter YeaV;
InterProP0ABD1 
PFAMP0ABD1 
ProdomP0ABD1 
UniProtKBP0ABD1.1YEAV_ECOLI RecName: Full=Uncharacterized transporter yeaV
InterProP0ABD1.1 
PFAMP0ABD1.1 
ProdomP0ABD1.1 
UniProtKBP76252RecName: Full=Uncharacterized transporter YeaV;
InterProP76252 
PFAMP76252 
ProdomP76252 
UniProtKBP0ABD2.1YEAV_ECO57 RecName: Full=Uncharacterized transporter yeaV
InterProP0ABD2.1 
PFAMP0ABD2.1 
ProdomP0ABD2.1 
UniProtKBP0ABD2RecName: Full=Uncharacterized transporter YeaV;
InterProP0ABD2 
PFAMP0ABD2 
ProdomP0ABD2 
RefSeqZP_07497817.1 putative transporter [Escherichia coli H736]
RefSeqAP_002420.1 predicted transporter [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_003054396.1 predicted transporter [Escherichia coli BL21(DE3)]
RefSeqYP_003044968.1 putative transporter [Escherichia coli B str. REL606]
RefSeqYP_002387286.1 putative transporter [Escherichia coli IAI1]
RefSeqNP_288237.1 putative transporter [Escherichia coli O157:H7 EDL933]
RefSeqNP_310537.1 putative transporter [Escherichia coli O157:H7 str. Sakai]
RefSeqYP_001724808.1 putative transporter [Escherichia coli ATCC 8739]
RefSeqYP_001730777.1 transporter [Escherichia coli str. K-12 substr. DH10B]
RefSeqYP_002403030.1 putative transporter [Escherichia coli 55989]
RefSeqYP_002407260.1 putative transporter [Escherichia coli IAI39]
RefSeqYP_002999553.1 hypothetical protein B21_01759 [Escherichia coli BL21]
RefSeqZP_03071705.1 transporter, betaine/carnitine/choline transporter [Escherichia coli 101-1]
RefSeqYP_002926811.1 putative transporter [Escherichia coli BW2952]
RefSeqZP_05436400.1 putative transporter [Escherichia sp. 4_1_40B]
RefSeqNP_416315.1 predicted transporter [Escherichia coli str. K-12 substr. MG1655]
GenPept169889292predicted transporter
GenPept218361141putative transporter
GenPept218352095putative transporter
GenPept209748422putative transport protein
GenPept254161860 putative transporter [Escherichia coli B str. REL606]
GenPept89108640 predicted transporter [Escherichia coli str. K-12 substr. W3110]
GenPept85675128predicted transporter
GenPept817587511putative transporter
GenPept359332278predicted transporter
GenPept307138461 putative transporter [Escherichia coli H736]
GenPept3025147YEAV_ECOLI PROBABLE TRANSPORT PROTEIN YEAV
GenPept256022535 putative transporter [Escherichia sp. 4_1_40B]
GenPept254288648 predicted transporter [Escherichia coli BL21(DE3)]