University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A017KCT1
Original Database ID ref NP_418813.1
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation subname: full=right origin-binding
protein {eco:0000313|embl:eye08315.1};
Sequence Length 289

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region3-289
Protein Length289
Template PDB Code1d5yA
Template Region3-289
Sequence Identity100%
E-Value0
GA3411
MPQS2.18868
z-DOPE-1.12
TSVMod MethodMSALL
TSVMod RMSD1.567
TSVMod NO350.954
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1d5ycrystal structure of the e. coli rob transcription factor in complex with dna ; PFAM: PF00165 ; SCOP: 16055 16056 39532
DBALI1d5yA 
CATH1.10.10.60 Domain: 1d5yA01 Homeodomain-like (100%)
CATH1.10.10.60 Domain: 1d5yA02 Homeodomain-like (100%)
CATH3.20.80.10 Domain: 1d5yA03 Multidrug-efflux Transporter 1 Regulator Bmrr; Chain (97%)
JenaImageLibrary1d5y 
Target Sequence
UniProtKBB2P9W3SubName: Full=Right origin-binding protein;
InterProB2P9W3 
PFAMB2P9W3 
ProdomB2P9W3 
UniProtKBA0A027U2H9SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZD31821.1};
InterProA0A027U2H9 
PFAMA0A027U2H9 
ProdomA0A027U2H9 
UniProtKBA0A028AHJ1SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZE10284.1};
InterProA0A028AHJ1 
PFAMA0A028AHJ1 
ProdomA0A028AHJ1 
UniProtKBA0A029JXV1SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:EZJ65312.1};
InterProA0A029JXV1 
PFAMA0A029JXV1 
ProdomA0A029JXV1 
UniProtKBA0A029L5K3SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:EZJ80709.1};
InterProA0A029L5K3 
PFAMA0A029L5K3 
ProdomA0A029L5K3 
UniProtKBA0A062XW71SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDA55113.1};
InterProA0A062XW71 
PFAMA0A062XW71 
ProdomA0A062XW71 
UniProtKBA0A064SQB8SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDG86501.1};
InterProA0A064SQB8 
PFAMA0A064SQB8 
ProdomA0A064SQB8 
UniProtKBA0A070F8E5SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:KDV62050.1};
InterProA0A070F8E5 
PFAMA0A070F8E5 
ProdomA0A070F8E5 
UniProtKBA0A070KTR3SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDW35159.1};
InterProA0A070KTR3 
PFAMA0A070KTR3 
ProdomA0A070KTR3 
UniProtKBA0A070Q3R2SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDW84118.1};
InterProA0A070Q3R2 
PFAMA0A070Q3R2 
ProdomA0A070Q3R2 
UniProtKBA0A070SR91SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDX20522.1};
InterProA0A070SR91 
PFAMA0A070SR91 
ProdomA0A070SR91 
UniProtKBA0A026S459SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZA00106.1};
InterProA0A026S459 
PFAMA0A026S459 
ProdomA0A026S459 
UniProtKBA0A026H1A0SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EYY75584.1};
InterProA0A026H1A0 
PFAMA0A026H1A0 
ProdomA0A026H1A0 
UniProtKBB1LEK3SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:ACB17704.1};
InterProB1LEK3 
PFAMB1LEK3 
ProdomB1LEK3 
UniProtKBB2NW45SubName: Full=Right origin-binding protein;
InterProB2NW45 
PFAMB2NW45 
ProdomB2NW45 
UniProtKBB3B4M8SubName: Full=Right origin-binding protein;
InterProB3B4M8 
PFAMB3B4M8 
ProdomB3B4M8 
UniProtKBB3BBP9SubName: Full=Right origin-binding protein;
InterProB3BBP9 
PFAMB3BBP9 
ProdomB3BBP9 
UniProtKBB3BSV4SubName: Full=Right origin-binding protein;
InterProB3BSV4 
PFAMB3BSV4 
ProdomB3BSV4 
UniProtKBB3AA91SubName: Full=Right origin-binding protein;
InterProB3AA91 
PFAMB3AA91 
ProdomB3AA91 
UniProtKBB3XIA5SubName: Full=Right origin-binding protein;
InterProB3XIA5 
PFAMB3XIA5 
ProdomB3XIA5 
UniProtKBB3WQP3SubName: Full=Right origin-binding protein;
InterProB3WQP3 
PFAMB3WQP3 
ProdomB3WQP3 
UniProtKBB5Z4S8SubName: Full=Right origin-binding protein;
InterProB5Z4S8 
PFAMB5Z4S8 
ProdomB5Z4S8 
UniProtKBB3IPI6SubName: Full=Right origin-binding protein;
InterProB3IPI6 
PFAMB3IPI6 
ProdomB3IPI6 
UniProtKBB1XFK6SubName: Full=DNA-binding transcriptional activator;
InterProB1XFK6 
PFAMB1XFK6 
ProdomB1XFK6 
UniProtKBA0A070YS63SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDX89843.1};
InterProA0A070YS63 
PFAMA0A070YS63 
ProdomA0A070YS63 
UniProtKBA0A071AZI2SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDY62702.1};
InterProA0A071AZI2 
PFAMA0A071AZI2 
ProdomA0A071AZI2 
UniProtKBA0A0E0Y7R3SubName: Full=Right oriC-binding transcriptional activator {ECO:0000313|EMBL:AFS76176.1};
InterProA0A0E0Y7R3 
PFAMA0A0E0Y7R3 
ProdomA0A0E0Y7R3 
UniProtKBA0A0E2A5C9SubName: Full=Right oriC-binding transcriptional activator {ECO:0000313|EMBL:EIL43471.1};
InterProA0A0E2A5C9 
PFAMA0A0E2A5C9 
ProdomA0A0E2A5C9 
UniProtKBA0A0E2TSL2SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EYV12701.1};
InterProA0A0E2TSL2 
PFAMA0A0E2TSL2 
ProdomA0A0E2TSL2 
UniProtKBA0A0E3MZC7SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:AKA93560.1};
InterProA0A0E3MZC7 
PFAMA0A0E3MZC7 
ProdomA0A0E3MZC7 
UniProtKBA0A0F6CCX7SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:AFJ32083.1};
InterProA0A0F6CCX7 
PFAMA0A0F6CCX7 
ProdomA0A0F6CCX7 
UniProtKBA0A0G3HKX0SubName: Full=Right oriC-binding transcriptional activator, AraC family protein {ECO:0000313|EMBL:AKK13984.1};
InterProA0A0G3HKX0 
PFAMA0A0G3HKX0 
ProdomA0A0G3HKX0 
UniProtKBA0A0G3J7Z9SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:AKK37388.1};
InterProA0A0G3J7Z9 
PFAMA0A0G3J7Z9 
ProdomA0A0G3J7Z9 
UniProtKBA0A0G3KS10SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:AKK56805.1};
InterProA0A0G3KS10 
PFAMA0A0G3KS10 
ProdomA0A0G3KS10 
UniProtKBA0A0G4JNL1SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:CFW93270.1};
InterProA0A0G4JNL1 
PFAMA0A0G4JNL1 
ProdomA0A0G4JNL1 
UniProtKBA0A0H3XDA3SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:AKM38007.1};
InterProA0A0H3XDA3 
PFAMA0A0H3XDA3 
ProdomA0A0H3XDA3 
UniProtKBA0A0E0VE82SubName: Full=Right oriC-binding transcriptional activator, AraC family {ECO:0000313|EMBL:AEQ15859.1};
InterProA0A0E0VE82 
PFAMA0A0E0VE82 
ProdomA0A0E0VE82 
UniProtKBA0A0A8UIK0SubName: Full=DNA-binding transcriptional activator {ECO:0000313|EMBL:CEK08612.1};
InterProA0A0A8UIK0 
PFAMA0A0A8UIK0 
ProdomA0A0A8UIK0 
UniProtKBA0A094NHE5SubName: Full=Right origin-binding protein,Right origin-binding protein,right oriC-binding transcriptional activator,DNA gyrase inhibitor,YSIRK-targeted surface antigen transcriptional regulator,Helix
InterProA0A094NHE5 
PFAMA0A094NHE5 
ProdomA0A094NHE5 
UniProtKBA0A071CMZ8SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDZ15401.1};
InterProA0A071CMZ8 
PFAMA0A071CMZ8 
ProdomA0A071CMZ8 
UniProtKBA0A071D6H1SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDZ36056.1};
InterProA0A071D6H1 
PFAMA0A071D6H1 
ProdomA0A071D6H1 
UniProtKBA0A073UFW0SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEL67155.1};
InterProA0A073UFW0 
PFAMA0A073UFW0 
ProdomA0A073UFW0 
UniProtKBA0A073WM87SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEL87529.1};
InterProA0A073WM87 
PFAMA0A073WM87 
ProdomA0A073WM87 
UniProtKBA0A074I5R0SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEO02842.1};
InterProA0A074I5R0 
PFAMA0A074I5R0 
ProdomA0A074I5R0 
UniProtKBA0A077ZDY8SubName: Full=GyrI-like and HTH 18 domain containing protein {ECO:0000313|EMBL:CDW58054.1};
InterProA0A077ZDY8 
PFAMA0A077ZDY8 
ProdomA0A077ZDY8 
UniProtKBA0A079GXT5SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDY95857.1};
InterProA0A079GXT5 
PFAMA0A079GXT5 
ProdomA0A079GXT5 
UniProtKBA0A079Y304SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEJ53275.1};
InterProA0A079Y304 
PFAMA0A079Y304 
ProdomA0A079Y304 
UniProtKBA0A080FJV7SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEN62003.1};
InterProA0A080FJV7 
PFAMA0A080FJV7 
ProdomA0A080FJV7 
UniProtKBA0A080FMV5SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEN60787.1};
InterProA0A080FMV5 
PFAMA0A080FMV5 
ProdomA0A080FMV5 
UniProtKBA0A0H4S356SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:AKP87540.1};
InterProA0A0H4S356 
PFAMA0A0H4S356 
ProdomA0A0H4S356 
UniProtKBA0A0I3JY99SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:CSW98181.1};
InterProA0A0I3JY99 
PFAMA0A0I3JY99 
ProdomA0A0I3JY99 
UniProtKBA8A8C5SubName: Full=Right origin-binding protein;
InterProA8A8C5 
PFAMA8A8C5 
ProdomA8A8C5 
UniProtKBB6I6P4SubName: Full=Putative transcriptional regulator {ECO:0000313|EMBL:BAG80196.1};
InterProB6I6P4 
PFAMB6I6P4 
ProdomB6I6P4 
UniProtKBA0A024KLP6SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:CDP65200.1};
InterProA0A024KLP6 
PFAMA0A024KLP6 
ProdomA0A024KLP6 
UniProtKBA0A028BTX7SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZE26887.1};
InterProA0A028BTX7 
PFAMA0A028BTX7 
ProdomA0A028BTX7 
UniProtKBA0A070DEA4SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:KDV36479.1};
InterProA0A070DEA4 
PFAMA0A070DEA4 
ProdomA0A070DEA4 
UniProtKBA0A070SXX2SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDX22320.1};
InterProA0A070SXX2 
PFAMA0A070SXX2 
ProdomA0A070SXX2 
UniProtKBA0A073H221SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEJ72063.1};
InterProA0A073H221 
PFAMA0A073H221 
ProdomA0A073H221 
UniProtKBA0A079D2I0SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDY17065.1};
InterProA0A079D2I0 
PFAMA0A079D2I0 
ProdomA0A079D2I0 
UniProtKBA0A080IBG0SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEO24158.1};
InterProA0A080IBG0 
PFAMA0A080IBG0 
ProdomA0A080IBG0 
UniProtKBA0A0E1M5M2SubName: Full=Right oriC-binding transcriptional activator, AraC family {ECO:0000313|EMBL:AJF59265.1};
InterProA0A0E1M5M2 
PFAMA0A0E1M5M2 
ProdomA0A0E1M5M2 
UniProtKBA0A0F6MKF7SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:EID64622.1};
InterProA0A0F6MKF7 
PFAMA0A0F6MKF7 
ProdomA0A0F6MKF7 
UniProtKBB3HEJ8SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:AIF62224.1};
InterProB3HEJ8 
PFAMB3HEJ8 
ProdomB3HEJ8 
UniProtKBA0A0J3ZAB3SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KME75330.1};
InterProA0A0J3ZAB3 
PFAMA0A0J3ZAB3 
ProdomA0A0J3ZAB3 
UniProtKBA0A0F6GWS6SubName: Full=Putative transcriptional regulator {ECO:0000313|EMBL:BAI57871.1};
InterProA0A0F6GWS6 
PFAMA0A0F6GWS6 
ProdomA0A0F6GWS6 
UniProtKBA7ZVT8SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:ABV18182.1};
InterProA7ZVT8 
PFAMA7ZVT8 
ProdomA7ZVT8 
UniProtKBA0A0F6ELP8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AIL43769.1};
InterProA0A0F6ELP8 
PFAMA0A0F6ELP8 
ProdomA0A0F6ELP8 
UniProtKBB1IS23SubName: Full=Transcriptional regulator, AraC family;
InterProB1IS23 
PFAMB1IS23 
ProdomB1IS23 
UniProtKBA0A073G452SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEJ55475.1};
InterProA0A073G452 
PFAMA0A073G452 
ProdomA0A073G452 
UniProtKBA0A0F6FGK0SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:AJA29540.1};
InterProA0A0F6FGK0 
PFAMA0A0F6FGK0 
ProdomA0A0F6FGK0 
UniProtKBB3AI46SubName: Full=Right origin-binding protein;
InterProB3AI46 
PFAMB3AI46 
ProdomB3AI46 
UniProtKBA0A017KCT1SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:EYE08315.1};
InterProA0A017KCT1 
PFAMA0A017KCT1 
ProdomA0A017KCT1 
UniProtKBA0A069XCQ3SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDU27690.1};
InterProA0A069XCQ3 
PFAMA0A069XCQ3 
ProdomA0A069XCQ3 
UniProtKBA0A073GEM0SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEJ53188.1};
InterProA0A073GEM0 
PFAMA0A073GEM0 
ProdomA0A073GEM0 
UniProtKBA0A080GX99SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEN92967.1};
InterProA0A080GX99 
PFAMA0A080GX99 
ProdomA0A080GX99 
UniProtKBA0A0H3MNX4SubName: Full=DNA-binding transcriptional activator {ECO:0000313|EMBL:CAR21025.1};
InterProA0A0H3MNX4 
PFAMA0A0H3MNX4 
ProdomA0A0H3MNX4 
UniProtKBB2PMC1SubName: Full=Right origin-binding protein;
InterProB2PMC1 
PFAMB2PMC1 
ProdomB2PMC1 
UniProtKBA0A073HAV7SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEJ70557.1};
InterProA0A073HAV7 
PFAMA0A073HAV7 
ProdomA0A073HAV7 
UniProtKBA0A074HJF9SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEN94789.1};
InterProA0A074HJF9 
PFAMA0A074HJF9 
ProdomA0A074HJF9 
UniProtKBA0A079F7C3SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDY51853.1};
InterProA0A079F7C3 
PFAMA0A079F7C3 
ProdomA0A079F7C3 
UniProtKBA0A080F491SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEN54076.1};
InterProA0A080F491 
PFAMA0A080F491 
ProdomA0A080F491 
UniProtKBA0A080IK53SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KEO29636.1};
InterProA0A080IK53 
PFAMA0A080IK53 
ProdomA0A080IK53 
UniProtKBA0A0E0U7F6SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:AEE59778.1};
InterProA0A0E0U7F6 
PFAMA0A0E0U7F6 
ProdomA0A0E0U7F6 
UniProtKBA0A0E1TB87SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:EDU66677.1};
InterProA0A0E1TB87 
PFAMA0A0E1TB87 
ProdomA0A0E1TB87 
UniProtKBA0A0E2UDA6SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZE18312.1};
InterProA0A0E2UDA6 
PFAMA0A0E2UDA6 
ProdomA0A0E2UDA6 
UniProtKBA0A0G2XH25SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:AKI69397.1};
InterProA0A0G2XH25 
PFAMA0A0G2XH25 
ProdomA0A0G2XH25 
UniProtKBA0A0G3KBF5SubName: Full=DNA-binding transcriptional activator {ECO:0000313|EMBL:AKK51405.1};
InterProA0A0G3KBF5 
PFAMA0A0G3KBF5 
ProdomA0A0G3KBF5 
UniProtKBA0A071BXA1SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDY86651.1};
InterProA0A071BXA1 
PFAMA0A071BXA1 
ProdomA0A071BXA1 
UniProtKBA0A070UZ18SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDX46789.1};
InterProA0A070UZ18 
PFAMA0A070UZ18 
ProdomA0A070UZ18 
UniProtKBA0A070P6F1SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:KDW76771.1};
InterProA0A070P6F1 
PFAMA0A070P6F1 
ProdomA0A070P6F1 
UniProtKBB2N0A7SubName: Full=Right origin-binding protein;
InterProB2N0A7 
PFAMB2N0A7 
ProdomB2N0A7 
UniProtKBB3IAQ3SubName: Full=Right origin-binding protein;
InterProB3IAQ3 
PFAMB3IAQ3 
ProdomB3IAQ3 
UniProtKBB3X459SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:EDX33706.1};
InterProB3X459 
PFAMB3X459 
ProdomB3X459 
UniProtKBB2TZS9SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:ACD09074.1};
InterProB2TZS9 
PFAMB2TZS9 
ProdomB2TZS9 
UniProtKBA0A025FLV9SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EYV52296.1};
InterProA0A025FLV9 
PFAMA0A025FLV9 
ProdomA0A025FLV9 
UniProtKBA0A026V5E9SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZA37284.1};
InterProA0A026V5E9 
PFAMA0A026V5E9 
ProdomA0A026V5E9 
UniProtKBA0A028DNJ3SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZE49238.1};
InterProA0A028DNJ3 
PFAMA0A028DNJ3 
ProdomA0A028DNJ3 
UniProtKBA0A029LNT7SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:EZJ86576.1};
InterProA0A029LNT7 
PFAMA0A029LNT7 
ProdomA0A029LNT7 
UniProtKBA0A070DFX4SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:KDV39896.1};
InterProA0A070DFX4 
PFAMA0A070DFX4 
ProdomA0A070DFX4 
UniProtKBA0A0H3Q3T5SubName: Full=Right origin-binding protein {ECO:0000313|EMBL:EDU93469.1};
InterProA0A0H3Q3T5 
PFAMA0A0H3Q3T5 
ProdomA0A0H3Q3T5