University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A025CAH9
Original Database ID ref NP_415039.1
Organism Escherichia coli, Klebsiella pneumoniae, etc.
Annotation subname: full=transcriptional
regulator {eco:0000313|embl:eyv12373.1};
Sequence Length 271

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region89-269
Protein Length271
Template PDB Code1tf1A
Template Region4-184
Sequence Identity96%
E-Value0
GA3411
MPQS1.8112
z-DOPE-1.08
TSVMod MethodMTALL
TSVMod RMSD0.408
TSVMod NO350.953
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1tf1crystal structure of the e. coli glyoxylate regulatory protein ligand binding domain
DBALI1tf1A 
CATH3.30.450.40 Domain: 1tf1A00 Beta-Lactamase (98%)
JenaImageLibrary1tf1 
Target Sequence
SFLD15800242Structure Function Linkage Database entry: Member of the Nucleophilic Attack 6-bladed Beta-Propeller (N6P) superfamily.
UniProtKBE9YYF3SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EGB60523.1};
InterProE9YYF3 
PFAME9YYF3 
ProdomE9YYF3 
UniProtKBA0A064U2Y9SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:KDH01560.1};
InterProA0A064U2Y9 
PFAMA0A064U2Y9 
ProdomA0A064U2Y9 
UniProtKBA0A0A8UPM1SubName: Full=DNA-binding transcriptional repressor {ECO:0000313|EMBL:CEK08676.1};
InterProA0A0A8UPM1 
PFAMA0A0A8UPM1 
ProdomA0A0A8UPM1 
UniProtKBA0A0E1LUB2SubName: Full=Transcriptional repressor of all and gcl operons {ECO:0000313|EMBL:AJF55270.1};
InterProA0A0E1LUB2 
PFAMA0A0E1LUB2 
ProdomA0A0E1LUB2 
UniProtKBA0A0E1ZUU1SubName: Full=DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:EIL36363.1};
InterProA0A0E1ZUU1 
PFAMA0A0E1ZUU1 
ProdomA0A0E1ZUU1 
UniProtKBA0A0E2UN29SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZE26973.1};
InterProA0A0E2UN29 
PFAMA0A0E2UN29 
ProdomA0A0E2UN29 
UniProtKBA0A0E3H2D8SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:AKA89491.1};
InterProA0A0E3H2D8 
PFAMA0A0E3H2D8 
ProdomA0A0E3H2D8 
UniProtKBA0A0G2X959SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:AKI65576.1};
InterProA0A0G2X959 
PFAMA0A0G2X959 
ProdomA0A0G2X959 
UniProtKBA0A0G3HJQ8SubName: Full=DNA-binding transcriptional repressor {ECO:0000313|EMBL:AKK13574.1};
InterProA0A0G3HJQ8 
PFAMA0A0G3HJQ8 
ProdomA0A0G3HJQ8 
UniProtKBA0A0H3EEK6SubName: Full=DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:ADR25909.1};
InterProA0A0H3EEK6 
PFAMA0A0H3EEK6 
ProdomA0A0H3EEK6 
UniProtKBA0A0I1G3R1SubName: Full=DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:CSQ13745.1};
InterProA0A0I1G3R1 
PFAMA0A0I1G3R1 
ProdomA0A0I1G3R1 
UniProtKBA0A028BUQ4SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZE27013.1};
InterProA0A028BUQ4 
PFAMA0A028BUQ4 
ProdomA0A028BUQ4 
UniProtKBA0A027ZQ33SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZE00653.1};
InterProA0A027ZQ33 
PFAMA0A027ZQ33 
ProdomA0A027ZQ33 
UniProtKBA7ZIR3SubName: Full=Transcriptional regulator AllR {ECO:0000313|EMBL:ABV16676.1};
InterProA7ZIR3 
PFAMA7ZIR3 
ProdomA7ZIR3 
UniProtKBE9WPY0SubName: Full=Transcriptional regulator;
InterProE9WPY0 
PFAME9WPY0 
ProdomE9WPY0 
UniProtKBF4VAU0SubName: Full=HTH-type transcriptional repressor AllR (Negative regulator ofallantoin and glyoxylate utilization operons) {ECO:0000313|EMBL:EGI47516.1};
InterProF4VAU0 
PFAMF4VAU0 
ProdomF4VAU0 
UniProtKBF4VRA5SubName: Full=HTH-type transcriptional repressor AllR (Negative regulator ofallantoin and glyoxylate utilization operons) {ECO:0000313|EMBL:EGI52268.1};
InterProF4VRA5 
PFAMF4VRA5 
ProdomF4VRA5 
UniProtKBF8XE83SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EGU96953.1};
InterProF8XE83 
PFAMF8XE83 
ProdomF8XE83 
UniProtKBF4TB39SubName: Full=HTH-type transcriptional repressor AllR (Negative regulator ofallantoin and glyoxylate utilization operons) {ECO:0000313|EMBL:EGI22797.1};
InterProF4TB39 
PFAMF4TB39 
ProdomF4TB39 
UniProtKBG4PXZ7SubName: Full=DNA-binding transcriptional regulator;
InterProG4PXZ7 
PFAMG4PXZ7 
ProdomG4PXZ7 
UniProtKBG2B619SubName: Full=HTH-type transcriptional repressor allR;
InterProG2B619 
PFAMG2B619 
ProdomG2B619 
UniProtKBG5T8E9SubName: Full=HTH-type transcriptional repressor AllR;
InterProG5T8E9 
PFAMG5T8E9 
ProdomG5T8E9 
UniProtKBF9R4M1SubName: Full=DNA-binding transcriptional repressor AllR;
InterProF9R4M1 
PFAMF9R4M1 
ProdomF9R4M1 
UniProtKBE1PAY1SubName: Full=Repressor of allantoin and glyoxylate utilization operons;
InterProE1PAY1 
PFAME1PAY1 
ProdomE1PAY1 
UniProtKBB7L7D3SubName: Full=AllR protein {ECO:0000313|EMBL:CAU96394.1};
InterProB7L7D3 
PFAMB7L7D3 
ProdomB7L7D3 
UniProtKBB1XGA4SubName: Full=DNA-binding transcriptional repressor;
InterProB1XGA4 
PFAMB1XGA4 
ProdomB1XGA4 
UniProtKBE1HV81SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFK88172.1};
InterProE1HV81 
PFAME1HV81 
ProdomE1HV81 
UniProtKBD8CH70SubName: Full=HTH-type transcriptional repressor AllR;
InterProD8CH70 
PFAMD8CH70 
ProdomD8CH70 
UniProtKBD7Y7L9SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFJ96380.1};
InterProD7Y7L9 
PFAMD7Y7L9 
ProdomD7Y7L9 
UniProtKBA7ZXG0SubName: Full=Transcriptional regulator AllR;
InterProA7ZXG0 
PFAMA7ZXG0 
ProdomA7ZXG0 
UniProtKBE7JFH6SubName: Full=HTH-type transcriptional repressor allR;
InterProE7JFH6 
PFAME7JFH6 
ProdomE7JFH6 
UniProtKBE6A5H3SubName: Full=HTH-type transcriptional repressor AllR;
InterProE6A5H3 
PFAME6A5H3 
ProdomE6A5H3 
UniProtKBE9U3X7SubName: Full=HTH-type transcriptional repressor AllR;
InterProE9U3X7 
PFAME9U3X7 
ProdomE9U3X7 
UniProtKBE8Y7U7SubName: Full=Transcriptional regulator, IclR family {ECO:0000313|EMBL:ADX51919.1};
InterProE8Y7U7 
PFAME8Y7U7 
ProdomE8Y7U7 
UniProtKBE9WBN3SubName: Full=Bacterial transcriptional regulator;
InterProE9WBN3 
PFAME9WBN3 
ProdomE9WBN3 
UniProtKBE9XW62SubName: Full=Transcriptional regulator;
InterProE9XW62 
PFAME9XW62 
ProdomE9XW62 
UniProtKBD8E0U5SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFK48102.1};
InterProD8E0U5 
PFAMD8E0U5 
ProdomD8E0U5 
UniProtKBD8ETU3SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFK48919.1};
InterProD8ETU3 
PFAMD8ETU3 
ProdomD8ETU3 
UniProtKBD7Z2K0SubName: Full=HTH-type transcriptional repressor AllR;
InterProD7Z2K0 
PFAMD7Z2K0 
ProdomD7Z2K0 
UniProtKBC4ZUV6SubName: Full=DNA-binding transcriptional repressor;
InterProC4ZUV6 
PFAMC4ZUV6 
ProdomC4ZUV6 
UniProtKBC5W0G0SubName: Full=Transcriptional regulator, IclR family {ECO:0000313|EMBL:ACT30151.1};
InterProC5W0G0 
PFAMC5W0G0 
ProdomC5W0G0 
UniProtKBC2DLV0SubName: Full=HTH-type transcriptional repressor AllR;
InterProC2DLV0 
PFAMC2DLV0 
ProdomC2DLV0 
UniProtKBC8UIT6SubName: Full=DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:BAI34514.1};
InterProC8UIT6 
PFAMC8UIT6 
ProdomC8UIT6 
UniProtKBC8U2I8SubName: Full=DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:BAI29346.1};
InterProC8U2I8 
PFAMC8U2I8 
ProdomC8U2I8 
UniProtKBD6J7L0SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFF14321.2};
InterProD6J7L0 
PFAMD6J7L0 
ProdomD6J7L0 
UniProtKBC8TJ94SubName: Full=DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:BAI23875.1};
InterProC8TJ94 
PFAMC8TJ94 
ProdomC8TJ94 
UniProtKBB7UKI4SubName: Full=DNA-binding transcriptional repressor {ECO:0000313|EMBL:CAS07988.1};
InterProB7UKI4 
PFAMB7UKI4 
ProdomB7UKI4 
UniProtKBD8AFB1SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFK18154.1};
InterProD8AFB1 
PFAMD8AFB1 
ProdomD8AFB1 
UniProtKBD7ZBM6SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFJ82293.1};
InterProD7ZBM6 
PFAMD7ZBM6 
ProdomD7ZBM6 
UniProtKBE9YDT0SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EGB67372.1};
InterProE9YDT0 
PFAME9YDT0 
ProdomE9YDT0 
UniProtKBE9XPD5SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EGB71093.1};
InterProE9XPD5 
PFAME9XPD5 
ProdomE9XPD5 
UniProtKBA0A025CAH9SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EYV12373.1};
InterProA0A025CAH9 
PFAMA0A025CAH9 
ProdomA0A025CAH9 
UniProtKBG5TDL0SubName: Full=HTH-type transcriptional repressor AllR;
InterProG5TDL0 
PFAMG5TDL0 
ProdomG5TDL0 
UniProtKBA0A027TX79SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZD29961.1};
InterProA0A027TX79 
PFAMA0A027TX79 
ProdomA0A027TX79 
UniProtKBA0A0E0V1F9SubName: Full=DNA-binding transcriptional regulator {ECO:0000313|EMBL:AEQ11324.1};
InterProA0A0E0V1F9 
PFAMA0A0E0V1F9 
ProdomA0A0E0V1F9 
UniProtKBA0A0F6F268SubName: Full=Negative regulator of allantoin and glyoxylate utilization operons {ECO:0000313|EMBL:AJA24508.1};
InterProA0A0F6F268 
PFAMA0A0F6F268 
ProdomA0A0F6F268 
UniProtKBA0A0J3W329SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:KME72116.1};
InterProA0A0J3W329 
PFAMA0A0J3W329 
ProdomA0A0J3W329 
UniProtKBC6V044SubName: Full=DNA-binding transcriptional repressor;
InterProC6V044 
PFAMC6V044 
ProdomC6V044 
UniProtKBD7XK20SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFJ88280.1};
InterProD7XK20 
PFAMD7XK20 
ProdomD7XK20 
UniProtKBD8BPW5SubName: Full=HTH-type transcriptional repressor AllR;
InterProD8BPW5 
PFAMD8BPW5 
ProdomD8BPW5 
UniProtKBE1J039SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFK70917.1};
InterProE1J039 
PFAME1J039 
ProdomE1J039 
UniProtKBE8IHL9SubName: Full=DNA-binding transcriptional repressor AllR;
InterProE8IHL9 
PFAME8IHL9 
ProdomE8IHL9 
UniProtKBF8YCG8SubName: Full=DNA-binding transcriptional repressor AllR;
InterProF8YCG8 
PFAMF8YCG8 
ProdomF8YCG8 
UniProtKBF3V2X3SubName: Full=HTH-type transcriptional repressor allR {ECO:0000313|EMBL:EGJ02347.1};
InterProF3V2X3 
PFAMF3V2X3 
ProdomF3V2X3 
UniProtKBE8I4G4SubName: Full=DNA-binding transcriptional repressor AllR;
InterProE8I4G4 
PFAME8I4G4 
ProdomE8I4G4 
UniProtKBA0A025GJ51SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EYV62720.1};
InterProA0A025GJ51 
PFAMA0A025GJ51 
ProdomA0A025GJ51 
UniProtKBE8HBP9SubName: Full=DNA-binding transcriptional repressor AllR;
InterProE8HBP9 
PFAME8HBP9 
ProdomE8HBP9 
UniProtKBA0A026GR70SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EYY72986.1};
InterProA0A026GR70 
PFAMA0A026GR70 
ProdomA0A026GR70 
UniProtKBC3TKV7SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:KLX07788.1};SubName: Full=HTH-type transcriptional repressor allR {ECO:0000313|EMBL:KGM68478.1};SubName: Full=Putative regulator
InterProC3TKV7 
PFAMC3TKV7 
ProdomC3TKV7 
UniProtKBE6AIF0SubName: Full=HTH-type transcriptional repressor AllR;
InterProE6AIF0 
PFAME6AIF0 
ProdomE6AIF0 
UniProtKBF4UJN7SubName: Full=HTH-type transcriptional repressor AllR (Negative regulator ofallantoin and glyoxylate utilization operons);
InterProF4UJN7 
PFAMF4UJN7 
ProdomF4UJN7 
UniProtKBA0A026RWG4SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EYZ97247.1};
InterProA0A026RWG4 
PFAMA0A026RWG4 
ProdomA0A026RWG4 
UniProtKBA0A0F6C042SubName: Full=DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:AFJ27598.1};
InterProA0A0F6C042 
PFAMA0A0F6C042 
ProdomA0A0F6C042 
UniProtKBC6UBX0SubName: Full=DNA-binding transcriptional repressor;
InterProC6UBX0 
PFAMC6UBX0 
ProdomC6UBX0 
UniProtKBD8AXG0SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFJ68478.1};
InterProD8AXG0 
PFAMD8AXG0 
ProdomD8AXG0 
UniProtKBE8JB36SubName: Full=DNA-binding transcriptional repressor AllR;
InterProE8JB36 
PFAME8JB36 
ProdomE8JB36 
UniProtKBF4NMR5SubName: Full=Acetate operon repressor {ECO:0000313|EMBL:EGJ07356.1};
InterProF4NMR5 
PFAMF4NMR5 
ProdomF4NMR5 
UniProtKBC6EKV9SubName: Full=Transcriptional regulator, IclR family {ECO:0000313|EMBL:ACT30151.1};
InterProC6EKV9 
PFAMC6EKV9 
ProdomC6EKV9 
UniProtKBC9QQ15SubName: Full=DNA-binding transcriptional regulator;SubName: Full=Transcriptional regulator, IclR family;
InterProC9QQ15 
PFAMC9QQ15 
ProdomC9QQ15 
UniProtKBD3QKJ6SubName: Full=Putative regulator {ECO:0000313|EMBL:ADD55251.1};
InterProD3QKJ6 
PFAMD3QKJ6 
ProdomD3QKJ6 
UniProtKBD7ZRT9SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFK26371.1};
InterProD7ZRT9 
PFAMD7ZRT9 
ProdomD7ZRT9 
UniProtKBD8APF6SubName: Full=HTH-type transcriptional repressor AllR {ECO:0000313|EMBL:EFK14965.1};
InterProD8APF6 
PFAMD8APF6 
ProdomD8APF6 
UniProtKBE0J603SubName: Full=DNA-binding transcriptional repressor {ECO:0000313|EMBL:ADT74108.1};SubName: Full=DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:AFH10242.1};
InterProE0J603 
PFAME0J603 
ProdomE0J603 
UniProtKBE0QW83SubName: Full=DNA-binding transcriptional repressor AllR;
InterProE0QW83 
PFAME0QW83 
ProdomE0QW83 
UniProtKBB7MQL8SubName: Full=DNA-binding transcriptional repressor {ECO:0000313|EMBL:CAR06736.1};
InterProB7MQL8 
PFAMB7MQL8 
ProdomB7MQL8 
UniProtKBE8HQH3SubName: Full=DNA-binding transcriptional repressor AllR;
InterProE8HQH3 
PFAME8HQH3 
ProdomE8HQH3 
UniProtKBE9U5L6SubName: Full=HTH-type transcriptional repressor AllR;
InterProE9U5L6 
PFAME9U5L6 
ProdomE9U5L6 
UniProtKBB1IZ94SubName: Full=Transcriptional regulator, IclR family;
InterProB1IZ94 
PFAMB1IZ94 
ProdomB1IZ94 
UniProtKBB7M4L0SubName: Full=DNA-binding transcriptional repressor;
InterProB7M4L0 
PFAMB7M4L0 
ProdomB7M4L0 
UniProtKBA0A0G3JFF1SubName: Full=IclR family transcriptional regulator {ECO:0000313|EMBL:AKK37896.1};
InterProA0A0G3JFF1 
PFAMA0A0G3JFF1 
ProdomA0A0G3JFF1 
UniProtKBE3PGD9SubName: Full=Negative regulator of allantoin and glyoxylate utilization operons {ECO:0000313|EMBL:CBJ00065.1};
InterProE3PGD9 
PFAME3PGD9 
ProdomE3PGD9 
UniProtKBF9CEJ2SubName: Full=DNA-binding transcriptional repressor AllR;
InterProF9CEJ2 
PFAMF9CEJ2 
ProdomF9CEJ2 
UniProtKBG2F898SubName: Full=DNA-binding transcriptional repressor AllR;
InterProG2F898 
PFAMG2F898 
ProdomG2F898 
UniProtKBF4SJT4SubName: Full=HTH-type transcriptional repressor AllR (Negative regulator ofallantoin and glyoxylate utilization operons) {ECO:0000313|EMBL:EGI10047.1};
InterProF4SJT4 
PFAMF4SJT4 
ProdomF4SJT4 
UniProtKBA0A027Z0C4SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZD92263.1};
InterProA0A027Z0C4 
PFAMA0A027Z0C4 
ProdomA0A027Z0C4 
UniProtKBA0A028DK80SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EZE48292.1};
InterProA0A028DK80 
PFAMA0A028DK80 
ProdomA0A028DK80 
UniProtKBA0A0E0Y2L4SubName: Full=DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:AFS75663.1};
InterProA0A0E0Y2L4 
PFAMA0A0E0Y2L4 
ProdomA0A0E0Y2L4 
UniProtKBA0A0E2TL64SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EYV08227.1};
InterProA0A0E2TL64 
PFAMA0A0E2TL64 
ProdomA0A0E2TL64 
UniProtKBA0A0F6MA96SubName: Full=DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:EID61064.1};
InterProA0A0F6MA96 
PFAMA0A0F6MA96 
ProdomA0A0F6MA96 
UniProtKBE4P7Q4SubName: Full=DNA-binding transcriptional repressor AllR;
InterProE4P7Q4 
PFAME4P7Q4 
ProdomE4P7Q4