University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P0AD48
Original Database ID ref NP_417038.4
Organism Escherichia coli, Klebsiella oxytoca, etc.
Annotation recname: full=inner membrane protein
ypha;
Sequence Length 140

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region23-139
Protein Length140
Template PDB Code1eysM
Template Region115-227
Sequence Identity13%
E-Value0.059
GA3410.06
MPQS0.709414
z-DOPE2.23
TSVMod MethodMTALL
TSVMod RMSD2.686
TSVMod NO350.622
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1eyscrystal structure of photosynthetic reaction center from a thermophilic bacterium, thermochromatium tepidum ; PFAM: PF03967 PF05239 ; SCOP: 43516
DBALI1eysM 
CATH1.20.85.10 Domain: 1eysM02 Membrane spanning alpha-helix pairs (53%)
JenaImageLibrary1eys 
Target Sequence
UniProtKBE9XJT8SubName: Full=DoxX protein {ECO:0000313|EMBL:EGB72360.1};
InterProE9XJT8 
PFAME9XJT8 
ProdomE9XJT8 
UniProtKBA0A029KXK2SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:EZJ77805.1};
InterProA0A029KXK2 
PFAMA0A029KXK2 
ProdomA0A029KXK2 
UniProtKBA0A029M4E8SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:EZJ92755.1};
InterProA0A029M4E8 
PFAMA0A029M4E8 
ProdomA0A029M4E8 
UniProtKBA0A069XKX4SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDU30791.1};
InterProA0A069XKX4 
PFAMA0A069XKX4 
ProdomA0A069XKX4 
UniProtKBA0A069YZK8SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDU52782.1};
InterProA0A069YZK8 
PFAMA0A069YZK8 
ProdomA0A069YZK8 
UniProtKBA0A070FHC5SubName: Full=Membrane protein {ECO:0000313|EMBL:KDV64176.1};
InterProA0A070FHC5 
PFAMA0A070FHC5 
ProdomA0A070FHC5 
UniProtKBA0A070NZE6SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDW74306.1};
InterProA0A070NZE6 
PFAMA0A070NZE6 
ProdomA0A070NZE6 
UniProtKBA0A070YU81SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDX90553.1};
InterProA0A070YU81 
PFAMA0A070YU81 
ProdomA0A070YU81 
UniProtKBA0A071AK40SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDY59286.1};
InterProA0A071AK40 
PFAMA0A071AK40 
ProdomA0A071AK40 
UniProtKBA0A071CV05SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDZ18492.1};
InterProA0A071CV05 
PFAMA0A071CV05 
ProdomA0A071CV05 
UniProtKBA0A071DEP9SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDZ34026.1};
InterProA0A071DEP9 
PFAMA0A071DEP9 
ProdomA0A071DEP9 
UniProtKBA0A028CAI8SubName: Full=Membrane protein {ECO:0000313|EMBL:EZE32324.1};
InterProA0A028CAI8 
PFAMA0A028CAI8 
ProdomA0A028CAI8 
UniProtKBA0A028ASE0SubName: Full=Membrane protein {ECO:0000313|EMBL:EZE14182.1};
InterProA0A028ASE0 
PFAMA0A028ASE0 
ProdomA0A028ASE0 
UniProtKBA7ZPY6SubName: Full=Putative inner membrane protein YphA {ECO:0000313|EMBL:ABV19365.1};
InterProA7ZPY6 
PFAMA7ZPY6 
ProdomA7ZPY6 
UniProtKBE7UL25SubName: Full=Inner membrane protein YphA;
InterProE7UL25 
PFAME7UL25 
ProdomE7UL25 
UniProtKBF4M8G9SubName: Full=Putative uncharacterized protein;
InterProF4M8G9 
PFAMF4M8G9 
ProdomF4M8G9 
UniProtKBF4VX88SubName: Full=Inner membrane protein YphA {ECO:0000313|EMBL:EGI50346.1};
InterProF4VX88 
PFAMF4VX88 
ProdomF4VX88 
UniProtKBF5MQP8SubName: Full=DoxX family protein;
InterProF5MQP8 
PFAMF5MQP8 
ProdomF5MQP8 
UniProtKBF1ZKT6SubName: Full=DoxX family protein {ECO:0000313|EMBL:EGE63923.1};
InterProF1ZKT6 
PFAMF1ZKT6 
ProdomF1ZKT6 
UniProtKBF7RC00SubName: Full=DoxX family protein;
InterProF7RC00 
PFAMF7RC00 
ProdomF7RC00 
UniProtKBF5Q8Q7SubName: Full=DoxX family protein;
InterProF5Q8Q7 
PFAMF5Q8Q7 
ProdomF5Q8Q7 
UniProtKBF8XFP4SubName: Full=Inner membrane protein YphA {ECO:0000313|EMBL:EGU96414.1};
InterProF8XFP4 
PFAMF8XFP4 
ProdomF8XFP4 
UniProtKBF5PUE1SubName: Full=DoxX family protein;
InterProF5PUE1 
PFAMF5PUE1 
ProdomF5PUE1 
UniProtKBD8AW34SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFK12649.1};
InterProD8AW34 
PFAMD8AW34 
ProdomD8AW34 
UniProtKBA0A073W0I6SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KEL85851.1};
InterProA0A073W0I6 
PFAMA0A073W0I6 
ProdomA0A073W0I6 
UniProtKBA0A074II63SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KEO09242.1};
InterProA0A074II63 
PFAMA0A074II63 
ProdomA0A074II63 
UniProtKBD7YR38SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFK00280.1};
InterProD7YR38 
PFAMD7YR38 
ProdomD7YR38 
UniProtKBC4ZXB8SubName: Full=Predicted inner membrane protein;
InterProC4ZXB8 
PFAMC4ZXB8 
ProdomC4ZXB8 
UniProtKBB3II21SubName: Full=Putative inner membrane protein YphA;
InterProB3II21 
PFAMB3II21 
ProdomB3II21 
UniProtKBB1IVT4SubName: Full=DoxX family protein;
InterProB1IVT4 
PFAMB1IVT4 
ProdomB1IVT4 
UniProtKBE1I8E0SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFK71452.1};
InterProE1I8E0 
PFAME1I8E0 
ProdomE1I8E0 
UniProtKBE0J4L7SubName: Full=Predicted inner membrane protein {ECO:0000313|EMBL:ADT76189.1};SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFH12368.1};
InterProE0J4L7 
PFAME0J4L7 
ProdomE0J4L7 
UniProtKBE7IUQ6SubName: Full=DoxX family protein;
InterProE7IUQ6 
PFAME7IUQ6 
ProdomE7IUQ6 
UniProtKBE7HC79SubName: Full=DoxX family protein;
InterProE7HC79 
PFAME7HC79 
ProdomE7HC79 
UniProtKBE7SY35SubName: Full=Inner membrane protein YphA {ECO:0000313|EMBL:EFW55470.1};
InterProE7SY35 
PFAME7SY35 
ProdomE7SY35 
UniProtKBE9W2U0SubName: Full=DoxX protein;
InterProE9W2U0 
PFAME9W2U0 
ProdomE9W2U0 
UniProtKBC6EKG4SubName: Full=DoxX family protein {ECO:0000313|EMBL:ACT28207.1};
InterProC6EKG4 
PFAMC6EKG4 
ProdomC6EKG4 
UniProtKBC9QPN0SubName: Full=DoxX family protein;
InterProC9QPN0 
PFAMC9QPN0 
ProdomC9QPN0 
UniProtKBB3WYG7SubName: Full=Putative inner membrane protein YphA {ECO:0000313|EMBL:EDX35650.1};
InterProB3WYG7 
PFAMB3WYG7 
ProdomB3WYG7 
UniProtKBA0A079FB60SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDY51692.1};
InterProA0A079FB60 
PFAMA0A079FB60 
ProdomA0A079FB60 
UniProtKBA0A079FIZ9SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDY57479.1};
InterProA0A079FIZ9 
PFAMA0A079FIZ9 
ProdomA0A079FIZ9 
UniProtKBA0A094NDW9SubName: Full=Putative inner membrane protein YqjF,Inner membrane protein yphA,DoxX {ECO:0000313|EMBL:CDX08005.1};
InterProA0A094NDW9 
PFAMA0A094NDW9 
ProdomA0A094NDW9 
UniProtKBA0A0A0FBR5SubName: Full=Inner membrane protein YphA {ECO:0000313|EMBL:KGM60264.1};
InterProA0A0A0FBR5 
PFAMA0A0A0FBR5 
ProdomA0A0A0FBR5 
UniProtKBA0A0E0U2C8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE57752.1};
InterProA0A0E0U2C8 
PFAMA0A0E0U2C8 
ProdomA0A0E0U2C8 
UniProtKBA0A0E1M091SubName: Full=DoxX family inner membrane protein {ECO:0000313|EMBL:AJF57400.1};
InterProA0A0E1M091 
PFAMA0A0E1M091 
ProdomA0A0E1M091 
UniProtKBA0A0F6EG10SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AIL41781.1};
InterProA0A0F6EG10 
PFAMA0A0F6EG10 
ProdomA0A0F6EG10 
UniProtKBA0A0G3HWE8SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:AKK15497.1};
InterProA0A0G3HWE8 
PFAMA0A0G3HWE8 
ProdomA0A0G3HWE8 
UniProtKBA0A0H3XBS0SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:AKM36101.1};
InterProA0A0H3XBS0 
PFAMA0A0H3XBS0 
ProdomA0A0H3XBS0 
UniProtKBA0A0H4RYN7SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:AKP85354.1};
InterProA0A0H4RYN7 
PFAMA0A0H4RYN7 
ProdomA0A0H4RYN7 
UniProtKBE9WHS8SubName: Full=DoxX protein;
InterProE9WHS8 
PFAME9WHS8 
ProdomE9WHS8 
UniProtKBE8Y9S8SubName: Full=DoxX family protein {ECO:0000313|EMBL:ADX49825.1};
InterProE8Y9S8 
PFAME8Y9S8 
ProdomE8Y9S8 
UniProtKBA0A017JTV5SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:EYE02281.1};
InterProA0A017JTV5 
PFAMA0A017JTV5 
ProdomA0A017JTV5 
UniProtKBF9QVI2SubName: Full=Putative uncharacterized protein;
InterProF9QVI2 
PFAMF9QVI2 
ProdomF9QVI2 
UniProtKBA0A026UK58SubName: Full=Membrane protein {ECO:0000313|EMBL:EZA30026.1};
InterProA0A026UK58 
PFAMA0A026UK58 
ProdomA0A026UK58 
UniProtKBA0A062YA00SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDA57236.1};
InterProA0A062YA00 
PFAMA0A062YA00 
ProdomA0A062YA00 
UniProtKBA0A070SU94SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDX20354.1};
InterProA0A070SU94 
PFAMA0A070SU94 
ProdomA0A070SU94 
UniProtKBA0A073GP23SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KEJ67469.1};
InterProA0A073GP23 
PFAMA0A073GP23 
ProdomA0A073GP23 
UniProtKBA0A080GV03SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KEN89546.1};
InterProA0A080GV03 
PFAMA0A080GV03 
ProdomA0A080GV03 
UniProtKBA0A0E2AEY3SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:EIL42360.1};
InterProA0A0E2AEY3 
PFAMA0A0E2AEY3 
ProdomA0A0E2AEY3 
UniProtKBB6I5B6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAG78354.1};
InterProB6I5B6 
PFAMB6I5B6 
ProdomB6I5B6 
UniProtKBD7ZUL9SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFK25402.1};
InterProD7ZUL9 
PFAMD7ZUL9 
ProdomD7ZUL9 
UniProtKBE6B959SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFU96436.1};
InterProE6B959 
PFAME6B959 
ProdomE6B959 
UniProtKBF5N5P1SubName: Full=DoxX family protein {ECO:0000313|EMBL:EGK20103.1};
InterProF5N5P1 
PFAMF5N5P1 
ProdomF5N5P1 
UniProtKBE9Y1X6SubName: Full=DoxX protein;
InterProE9Y1X6 
PFAME9Y1X6 
ProdomE9Y1X6 
UniProtKBE3XY65SubName: Full=DoxX family protein;
InterProE3XY65 
PFAME3XY65 
ProdomE3XY65 
UniProtKBA0A025FNT6SubName: Full=Membrane protein {ECO:0000313|EMBL:EYV52951.1};
InterProA0A025FNT6 
PFAMA0A025FNT6 
ProdomA0A025FNT6 
UniProtKBE1IN97SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFO59127.1};
InterProE1IN97 
PFAME1IN97 
ProdomE1IN97 
UniProtKBA0A026HB28SubName: Full=Membrane protein {ECO:0000313|EMBL:EYY79901.1};
InterProA0A026HB28 
PFAMA0A026HB28 
ProdomA0A026HB28 
UniProtKBA0A079H9A4SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDY97716.1};
InterProA0A079H9A4 
PFAMA0A079H9A4 
ProdomA0A079H9A4 
UniProtKBE1HUH9SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFK88384.1};
InterProE1HUH9 
PFAME1HUH9 
ProdomE1HUH9 
UniProtKBF3V8I0SubName: Full=DoxX family protein {ECO:0000313|EMBL:EGI94888.1};
InterProF3V8I0 
PFAMF3V8I0 
ProdomF3V8I0 
UniProtKBA0A026RY34SubName: Full=Membrane protein {ECO:0000313|EMBL:EYZ97913.1};
InterProA0A026RY34 
PFAMA0A026RY34 
ProdomA0A026RY34 
UniProtKBA0A070PRL9SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDW83711.1};
InterProA0A070PRL9 
PFAMA0A070PRL9 
ProdomA0A070PRL9 
UniProtKBA0A080F7T6SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KEN55405.1};
InterProA0A080F7T6 
PFAMA0A080F7T6 
ProdomA0A080F7T6 
UniProtKBA0A0I1HL71SubName: Full=Putative inner membrane protein YqjF {ECO:0000313|EMBL:CSQ54647.1};
InterProA0A0I1HL71 
PFAMA0A0I1HL71 
ProdomA0A0I1HL71 
UniProtKBE6BGW9SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFU36533.1};
InterProE6BGW9 
PFAME6BGW9 
ProdomE6BGW9 
UniProtKBE9YGX8SubName: Full=DoxX protein {ECO:0000313|EMBL:EGB66291.1};
InterProE9YGX8 
PFAME9YGX8 
ProdomE9YGX8 
UniProtKBA0A080I824SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KEO22998.1};
InterProA0A080I824 
PFAMA0A080I824 
ProdomA0A080I824 
UniProtKBA0A0C7MUN6SubName: Full=Putative inner membrane protein YqjF {ECO:0000313|EMBL:CEP57286.1};
InterProA0A0C7MUN6 
PFAMA0A0C7MUN6 
ProdomA0A0C7MUN6 
UniProtKBA0A0E3H3L8SubName: Full=Inner membrane protein YphA {ECO:0000313|EMBL:AKA91641.1};
InterProA0A0E3H3L8 
PFAMA0A0E3H3L8 
ProdomA0A0E3H3L8 
UniProtKBA0A0G3KPA5SubName: Full=Membrane protein {ECO:0000313|EMBL:AKK55113.1};
InterProA0A0G3KPA5 
PFAMA0A0G3KPA5 
ProdomA0A0G3KPA5 
UniProtKBB3XDG8SubName: Full=Putative inner membrane protein YphA;
InterProB3XDG8 
PFAMB3XDG8 
ProdomB3XDG8 
UniProtKBD7XMS5SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFJ87350.1};
InterProD7XMS5 
PFAMD7XMS5 
ProdomD7XMS5 
UniProtKBD7Y9Q4SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFJ95586.1};
InterProD7Y9Q4 
PFAMD7Y9Q4 
ProdomD7Y9Q4 
UniProtKBB3HIM1SubName: Full=Inner membrane protein YphA {ECO:0000313|EMBL:AIF64264.1};
InterProB3HIM1 
PFAMB3HIM1 
ProdomB3HIM1 
UniProtKBE1J3M4SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFK69597.1};
InterProE1J3M4 
PFAME1J3M4 
ProdomE1J3M4 
UniProtKBE7J583SubName: Full=DoxX family protein;
InterProE7J583 
PFAME7J583 
ProdomE7J583 
UniProtKBA0A079DA99SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDY19735.1};
InterProA0A079DA99 
PFAMA0A079DA99 
ProdomA0A079DA99 
UniProtKBA0A073TDH5SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KEL24900.1};
InterProA0A073TDH5 
PFAMA0A073TDH5 
ProdomA0A073TDH5 
UniProtKBA0A071C0R3SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDY90428.1};
InterProA0A071C0R3 
PFAMA0A071C0R3 
ProdomA0A071C0R3 
UniProtKBD8B9B1SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFJ64353.1};
InterProD8B9B1 
PFAMD8B9B1 
ProdomD8B9B1 
UniProtKBF5PEK8SubName: Full=DoxX family protein;
InterProF5PEK8 
PFAMF5PEK8 
ProdomF5PEK8 
UniProtKBF5R1M0SubName: Full=DoxX family protein;
InterProF5R1M0 
PFAMF5R1M0 
ProdomF5R1M0 
UniProtKBE9YR63SubName: Full=DoxX protein {ECO:0000313|EMBL:EGB63403.1};
InterProE9YR63 
PFAME9YR63 
ProdomE9YR63 
UniProtKBA0A027TYL7SubName: Full=Membrane protein {ECO:0000313|EMBL:EZD30395.1};
InterProA0A027TYL7 
PFAMA0A027TYL7 
ProdomA0A027TYL7 
UniProtKBA0A028E2M0SubName: Full=Membrane protein {ECO:0000313|EMBL:EZE54138.1};
InterProA0A028E2M0 
PFAMA0A028E2M0 
ProdomA0A028E2M0 
UniProtKBA0A069X914SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDU26189.1};
InterProA0A069X914 
PFAMA0A069X914 
ProdomA0A069X914 
UniProtKBA0A070CGL8SubName: Full=Membrane protein {ECO:0000313|EMBL:KDV27252.1};
InterProA0A070CGL8 
PFAMA0A070CGL8 
ProdomA0A070CGL8 
UniProtKBA0A070VB02SubName: Full=Inner membrane protein yphA {ECO:0000313|EMBL:KDX47518.1};
InterProA0A070VB02 
PFAMA0A070VB02 
ProdomA0A070VB02 
UniProtKBD8ENR6SubName: Full=DoxX family protein {ECO:0000313|EMBL:EFK50736.1};
InterProD8ENR6 
PFAMD8ENR6 
ProdomD8ENR6